Wall clock time and date at job start Sat Apr 11 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47340 * 2 1 4 4 O 1.42898 * 109.47655 * 239.99804 * 2 1 3 5 5 C 1.53006 * 109.46904 * 119.99759 * 2 1 3 6 6 H 1.08997 * 109.49503 * 64.94064 * 5 2 1 7 7 C 1.53041 * 109.49681 * 185.00165 * 5 2 1 8 8 C 1.53039 * 109.53696 * 181.31810 * 7 5 2 9 9 C 1.53196 * 109.31201 * 298.63524 * 8 7 5 10 10 N 1.46923 * 108.77474 * 54.63480 * 9 8 7 11 11 C 1.34778 * 120.63008 * 126.36719 * 10 9 8 12 12 O 1.21343 * 120.00349 * 188.66737 * 11 10 9 13 13 C 1.49453 * 119.99631 * 8.67277 * 11 10 9 14 14 O 1.21342 * 120.00588 * 6.76206 * 13 11 10 15 15 N 1.34780 * 119.99355 * 186.76673 * 13 11 10 16 16 C 1.46510 * 119.99456 * 179.97438 * 15 13 11 17 17 C 1.53006 * 109.46793 * 179.97438 * 16 15 13 18 18 C 1.52999 * 109.46848 * 60.00327 * 17 16 15 19 19 C 1.53001 * 109.47171 * 300.00088 * 17 16 15 20 20 C 1.50700 * 109.46765 * 180.02562 * 17 16 15 21 21 H 1.08000 * 120.00277 * 359.97438 * 20 17 16 22 22 C 1.37874 * 119.99710 * 180.02562 * 20 17 16 23 23 N 1.31513 * 120.00090 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99948 * 179.97438 * 22 20 17 25 25 H 1.48504 * 109.47112 * 180.02562 * 24 22 20 26 26 H 1.48507 * 109.46994 * 299.99984 * 24 22 20 27 27 H 1.48494 * 109.47185 * 59.99821 * 24 22 20 28 28 C 1.46927 * 118.73801 * 306.64217 * 10 9 8 29 29 H 1.08994 * 109.47900 * 300.00212 * 1 2 3 30 30 H 1.09005 * 109.46804 * 60.00264 * 1 2 3 31 31 H 1.09000 * 109.47004 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47490 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47114 * 300.00569 * 3 2 1 34 34 H 1.09008 * 109.46803 * 59.99354 * 3 2 1 35 35 H 0.96700 * 113.99971 * 300.00367 * 4 2 1 36 36 H 1.09004 * 109.45752 * 61.29558 * 7 5 2 37 37 H 1.08997 * 109.46236 * 301.33972 * 7 5 2 38 38 H 1.09005 * 109.49557 * 178.68578 * 8 7 5 39 39 H 1.08995 * 109.52500 * 58.60706 * 8 7 5 40 40 H 1.09002 * 109.58701 * 294.84810 * 9 8 7 41 41 H 1.09003 * 109.70172 * 174.49401 * 9 8 7 42 42 H 0.96996 * 120.00786 * 359.97438 * 15 13 11 43 43 H 1.09002 * 109.47095 * 59.99874 * 16 15 13 44 44 H 1.08995 * 109.46997 * 299.99492 * 16 15 13 45 45 H 1.09001 * 109.46571 * 180.02562 * 18 17 16 46 46 H 1.09010 * 109.47049 * 299.99374 * 18 17 16 47 47 H 1.08995 * 109.47680 * 59.99660 * 18 17 16 48 48 H 1.09002 * 109.47260 * 300.00062 * 19 17 16 49 49 H 1.08996 * 109.47274 * 60.00058 * 19 17 16 50 50 H 1.08997 * 109.46669 * 180.02562 * 19 17 16 51 51 H 0.97000 * 120.00281 * 179.97438 * 23 22 20 52 52 H 1.09004 * 109.58026 * 173.14157 * 28 10 9 53 53 H 1.08995 * 109.58548 * 293.56644 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0399 -0.7212 1.2493 6 1 1.7508 -1.7713 1.2066 7 6 3.5651 -0.6136 1.3144 8 6 4.0790 -1.3627 2.5461 9 6 3.4946 -0.7220 3.8090 10 7 2.0306 -0.6903 3.6892 11 6 1.2512 -1.2177 4.6540 12 8 0.0560 -1.3283 4.4756 13 6 1.8588 -1.6661 5.9437 14 8 3.0298 -1.4445 6.1722 15 7 1.1061 -2.3167 6.8529 16 6 1.7019 -2.7567 8.1170 17 6 0.6403 -3.4633 8.9625 18 6 0.1065 -4.6777 8.2002 19 6 -0.5095 -2.4958 9.2501 20 6 1.2530 -3.9154 10.2629 21 1 2.2954 -3.7189 10.4659 22 6 0.4831 -4.5808 11.1931 23 7 -0.7859 -4.8214 10.9453 24 14 1.2427 -5.1419 12.8048 25 1 0.2126 -5.8286 13.6250 26 1 2.3591 -6.0806 12.5256 27 1 1.7604 -3.9632 13.5449 28 6 1.4327 -0.0783 2.4948 29 1 -0.3635 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6765 1.9563 0.8900 35 1 1.7211 -1.5952 -1.2328 36 1 3.8526 0.4357 1.3814 37 1 3.9988 -1.0520 0.4157 38 1 5.1670 -1.3053 2.5791 39 1 3.7712 -2.4069 2.4921 40 1 3.8749 0.2943 3.9126 41 1 3.7772 -1.3087 4.6832 42 1 0.1700 -2.4936 6.6705 43 1 2.0819 -1.8915 8.6602 44 1 2.5213 -3.4457 7.9120 45 1 -0.6501 -5.1807 8.8023 46 1 -0.3368 -4.3502 7.2597 47 1 0.9256 -5.3669 7.9952 48 1 -0.1292 -1.6306 9.7932 49 1 -0.9528 -2.1684 8.3097 50 1 -1.2655 -2.9990 9.8528 51 1 -1.3275 -5.2899 11.5996 52 1 0.3551 -0.2426 2.5008 53 1 1.6413 0.9915 2.4892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349418170.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:45 Heat of formation + Delta-G solvation = -140.625824 kcal Electronic energy + Delta-G solvation = -31318.138401 eV Core-core repulsion = 27189.078149 eV Total energy + Delta-G solvation = -4129.060252 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.13726 -40.62110 -39.45330 -38.33993 -37.64535 -35.17392 -34.21300 -33.34116 -32.75220 -30.59388 -28.57729 -28.11282 -27.59705 -27.32765 -26.47803 -25.00688 -23.89809 -22.24084 -21.28558 -20.66846 -20.22093 -18.89276 -18.27253 -17.76009 -17.52631 -17.10327 -16.70543 -16.62601 -16.33369 -15.80448 -15.70586 -15.47104 -15.14125 -15.02271 -14.85626 -14.76016 -14.49762 -14.14864 -14.07361 -13.79641 -13.45428 -13.21691 -13.14225 -13.10177 -12.86955 -12.83008 -12.68785 -12.61962 -12.59482 -12.30368 -12.28347 -12.12243 -11.90317 -11.82745 -11.79452 -11.50940 -11.31605 -11.24309 -10.78027 -10.73490 -10.41530 -10.28191 -10.05567 -9.80261 -8.01340 -6.17976 0.30497 1.27809 1.46320 1.47686 1.54012 2.07789 2.42289 2.53746 3.22604 3.24990 3.33350 3.58585 3.72372 3.83775 4.05336 4.12259 4.19391 4.22253 4.31710 4.33926 4.47250 4.54311 4.62172 4.67064 4.72435 4.75648 4.84501 4.86748 4.94165 4.97636 4.98253 5.02948 5.04298 5.07351 5.08046 5.16380 5.19726 5.21154 5.29956 5.35196 5.40556 5.47455 5.53610 5.63968 5.67407 5.94528 6.10526 6.18293 6.25316 6.40875 6.67937 6.85003 6.85843 6.94412 7.50095 8.97750 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027234 B = 0.002214 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.890342 B =12641.127727 C =13127.862859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.141 3.859 3 C -0.147 4.147 4 O -0.569 6.569 5 C -0.117 4.117 6 H 0.069 0.931 7 C -0.108 4.108 8 C -0.130 4.130 9 C 0.065 3.935 10 N -0.574 5.574 11 C 0.509 3.491 12 O -0.546 6.546 13 C 0.498 3.502 14 O -0.534 6.534 15 N -0.680 5.680 16 C 0.143 3.857 17 C 0.051 3.949 18 C -0.124 4.124 19 C -0.125 4.125 20 C -0.526 4.526 21 H 0.053 0.947 22 C 0.026 3.974 23 N -0.902 5.902 24 Si 0.948 3.052 25 H -0.287 1.287 26 H -0.275 1.275 27 H -0.275 1.275 28 C 0.107 3.893 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.387 0.613 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.412 0.588 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.028 0.972 47 H 0.024 0.976 48 H 0.023 0.977 49 H 0.028 0.972 50 H 0.063 0.937 51 H 0.260 0.740 52 H 0.088 0.912 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.750 10.196 -22.738 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.204 4.204 4 O -0.376 6.376 5 C -0.137 4.137 6 H 0.087 0.913 7 C -0.146 4.146 8 C -0.168 4.168 9 C -0.056 4.056 10 N -0.307 5.307 11 C 0.291 3.709 12 O -0.424 6.424 13 C 0.279 3.721 14 O -0.414 6.414 15 N -0.331 5.331 16 C 0.021 3.979 17 C 0.050 3.950 18 C -0.182 4.182 19 C -0.182 4.182 20 C -0.564 4.564 21 H 0.071 0.929 22 C -0.174 4.174 23 N -0.540 5.540 24 Si 0.775 3.225 25 H -0.212 1.212 26 H -0.200 1.200 27 H -0.201 1.201 28 C -0.014 4.014 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.236 0.764 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.140 0.860 42 H 0.250 0.750 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.047 0.953 47 H 0.043 0.957 48 H 0.042 0.958 49 H 0.047 0.953 50 H 0.082 0.918 51 H 0.069 0.931 52 H 0.106 0.894 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.046 10.782 -22.673 25.824 hybrid contribution -0.564 -1.171 1.226 1.787 sum 5.482 9.611 -21.447 24.133 Atomic orbital electron populations 1.22577 0.95440 1.02875 1.03162 1.21054 0.92558 0.93028 0.83391 1.21933 1.02408 0.93080 1.02943 1.86525 1.77498 1.30058 1.43551 1.22040 0.97245 1.00234 0.94163 0.91294 1.21582 0.93500 1.01575 0.97919 1.21929 1.01659 0.99356 0.93840 1.22929 0.76771 1.03950 1.01948 1.48030 1.08339 1.55516 1.18788 1.20068 0.86531 0.79119 0.85167 1.90727 1.15649 1.55454 1.80548 1.20306 0.86494 0.79601 0.85663 1.90468 1.16146 1.56892 1.77917 1.46120 1.15001 1.54301 1.17683 1.21567 0.96693 0.97862 0.81806 1.18369 0.91667 0.92175 0.92750 1.21711 1.00351 0.98912 0.97223 1.21715 1.00114 0.97695 0.98716 1.21213 0.96414 1.37100 1.01714 0.92922 1.25501 0.95253 0.95794 1.00829 1.69918 1.06719 1.41543 1.35842 0.85772 0.78086 0.78411 0.80266 1.21213 1.20045 1.20082 1.21991 0.99149 0.97748 0.82541 0.91188 0.91369 0.92192 0.91255 0.91859 0.90143 0.76375 0.90396 0.90572 0.88807 0.92702 0.90067 0.86033 0.75027 0.92624 0.92438 0.91815 0.95282 0.95668 0.95762 0.95270 0.91813 0.93061 0.89387 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 8.33 71.98 0.60 -1.66 16 2 C 0.14 1.77 0.87 -10.79 -0.01 1.76 16 3 C -0.15 -1.66 8.12 71.98 0.58 -1.08 16 4 O -0.57 -7.69 12.49 -148.98 -1.86 -9.55 16 5 C -0.12 -1.70 1.90 -10.86 -0.02 -1.72 16 6 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 7 C -0.11 -1.45 4.55 30.62 0.14 -1.31 16 8 C -0.13 -2.06 6.08 30.67 0.19 -1.88 16 9 C 0.06 1.34 5.99 86.36 0.52 1.86 16 10 N -0.57 -13.48 2.98 -821.32 -2.45 -15.92 16 11 C 0.51 15.38 7.73 87.27 0.67 16.06 16 12 O -0.55 -18.46 15.93 -3.22 -0.05 -18.51 16 13 C 0.50 16.79 7.74 87.27 0.68 17.46 16 14 O -0.53 -18.87 13.18 -3.22 -0.04 -18.91 16 15 N -0.68 -24.41 4.95 -464.38 -2.30 -26.71 16 16 C 0.14 5.83 4.50 86.38 0.39 6.21 16 17 C 0.05 2.34 0.50 -52.93 -0.03 2.31 16 18 C -0.12 -5.60 8.08 71.98 0.58 -5.02 16 19 C -0.12 -5.65 8.08 71.98 0.58 -5.07 16 20 C -0.53 -27.05 8.01 25.60 0.21 -26.85 16 21 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 22 C 0.03 1.35 5.15 84.65 0.44 1.79 16 23 N -0.90 -48.16 9.35 21.45 0.20 -47.96 16 24 Si 0.95 41.91 29.54 68.60 2.03 43.94 16 25 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 26 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 27 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 28 C 0.11 1.93 4.89 86.22 0.42 2.35 16 29 H 0.07 0.88 6.48 -2.39 -0.02 0.87 16 30 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.78 6.37 -2.39 -0.02 0.77 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 0.76 6.46 -2.38 -0.02 0.74 16 35 H 0.39 3.08 9.05 -74.06 -0.67 2.41 16 36 H 0.08 0.93 6.42 -2.38 -0.02 0.91 16 37 H 0.08 1.00 7.79 -2.39 -0.02 0.98 16 38 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 41 H 0.12 3.19 4.31 -47.73 -0.21 2.98 16 42 H 0.41 14.63 5.65 -92.71 -0.52 14.10 16 43 H 0.06 2.32 8.14 -2.39 -0.02 2.31 16 44 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 46 H 0.03 1.15 6.86 -2.38 -0.02 1.13 16 47 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.03 1.16 6.86 -2.39 -0.02 1.15 16 50 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 51 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 52 H 0.09 1.81 5.56 -2.38 -0.01 1.79 16 53 H 0.09 1.35 6.33 -2.39 -0.02 1.34 16 Total: -1.00 -59.17 396.17 1.01 -58.17 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: -0.46 Total: 30.25 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 5.93 Total: 5.22 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -4.54 Total: -90.59 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -1.96 Total: -46.97 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -59.17 1.01 -58.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349418170.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.457 kcal (2) G-P(sol) polarization free energy of solvation -59.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds