Wall clock time and date at job start Sat Apr 11 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47259 * 2 1 4 4 C 1.50697 * 109.47480 * 239.99392 * 2 1 3 5 5 H 1.07992 * 120.00393 * 238.37226 * 4 2 1 6 6 C 1.37881 * 119.99736 * 58.36853 * 4 2 1 7 7 N 1.31517 * 119.99671 * 2.57531 * 6 4 2 8 8 Si 1.86800 * 120.00063 * 182.57212 * 6 4 2 9 9 H 1.48507 * 109.46958 * 94.99402 * 8 6 4 10 10 H 1.48497 * 109.47250 * 214.99578 * 8 6 4 11 11 H 1.48499 * 109.47013 * 335.00142 * 8 6 4 12 12 C 1.53000 * 109.46672 * 119.99462 * 2 1 3 13 13 N 1.46499 * 109.47441 * 300.00097 * 12 2 1 14 14 C 1.34771 * 120.00044 * 180.02562 * 13 12 2 15 15 O 1.21586 * 120.00093 * 5.04949 * 14 13 12 16 16 N 1.35108 * 120.00211 * 185.04755 * 14 13 12 17 17 C 1.50011 * 120.36757 * 173.24997 * 16 14 13 18 18 C 1.46774 * 107.61894 * 110.58307 * 17 16 14 19 19 O 1.41002 * 115.12022 * 59.05914 * 18 17 16 20 20 C 1.38298 * 114.14147 * 272.27798 * 19 18 17 21 21 C 1.54485 * 110.12420 * 212.07948 * 20 19 18 22 22 C 1.52827 * 109.18574 * 65.62712 * 21 20 19 23 23 O 1.42988 * 109.17298 * 60.06479 * 22 21 20 24 24 C 1.42911 * 113.52901 * 298.60821 * 23 22 21 25 25 C 1.52969 * 109.72974 * 60.04860 * 24 23 22 26 26 C 1.55170 * 111.47577 * 95.00410 * 20 19 18 27 27 C 1.42881 * 120.53207 * 355.14250 * 16 14 13 28 28 H 1.08994 * 109.47530 * 295.00892 * 1 2 3 29 29 H 1.09006 * 109.46858 * 55.00694 * 1 2 3 30 30 H 1.08997 * 109.47272 * 175.00436 * 1 2 3 31 31 H 1.08999 * 109.47244 * 179.97438 * 3 2 1 32 32 H 1.09009 * 109.46995 * 299.99479 * 3 2 1 33 33 H 1.08998 * 109.47353 * 59.99723 * 3 2 1 34 34 H 0.97002 * 119.99374 * 179.97438 * 7 6 4 35 35 H 1.09007 * 109.46860 * 179.97438 * 12 2 1 36 36 H 1.08996 * 109.47075 * 60.00545 * 12 2 1 37 37 H 0.97003 * 120.00167 * 359.97438 * 13 12 2 38 38 H 1.09121 * 109.91144 * 230.26822 * 17 16 14 39 39 H 1.09146 * 109.89663 * 350.91211 * 17 16 14 40 40 H 1.10367 * 106.81536 * 178.22886 * 18 17 16 41 41 H 1.08404 * 109.13688 * 292.52113 * 18 17 16 42 42 H 1.08863 * 108.91036 * 305.67092 * 21 20 19 43 43 H 1.08842 * 108.95716 * 185.70153 * 21 20 19 44 44 H 1.08962 * 109.72613 * 300.10465 * 22 21 20 45 45 H 1.09022 * 109.61692 * 179.85959 * 22 21 20 46 46 H 1.09131 * 109.25240 * 179.97438 * 24 23 22 47 47 H 1.08922 * 109.25931 * 299.39748 * 24 23 22 48 48 H 1.09664 * 108.68229 * 61.21530 * 25 24 23 49 49 H 1.08451 * 109.82271 * 179.62148 * 25 24 23 50 50 H 1.09626 * 108.82235 * 78.81922 * 26 20 19 51 51 H 1.09571 * 108.89949 * 196.08678 * 26 20 19 52 52 H 1.09764 * 107.34484 * 135.53708 * 27 16 14 53 53 H 1.09783 * 107.30206 * 22.12941 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6748 -1.5729 -1.1314 6 6 1.6718 -0.2595 -2.4824 7 7 0.9311 0.8204 -2.6041 8 14 2.2353 -1.1822 -4.0057 9 1 1.1745 -2.1307 -4.4306 10 1 2.5018 -0.2147 -5.1002 11 1 3.4776 -1.9350 -3.6970 12 6 2.0398 -0.7212 1.2493 13 7 1.5515 -0.0305 2.4455 14 6 1.8774 -0.4906 3.6696 15 8 2.6503 -1.4223 3.7829 16 7 1.3454 0.0835 4.7708 17 6 1.5813 -0.5137 6.1265 18 6 2.4568 0.4010 6.8688 19 8 1.9515 1.7062 7.0399 20 6 2.2539 2.5703 6.0033 21 6 2.4168 4.0093 6.5411 22 6 3.6363 4.0668 7.4605 23 8 4.8010 3.6943 6.7194 24 6 4.7463 2.3634 6.2016 25 6 3.5476 2.2239 5.2617 26 6 1.1031 2.6361 4.9645 27 6 0.5182 1.2430 4.6573 28 1 -0.3634 0.4344 0.9312 29 1 -0.3633 0.5894 -0.8419 30 1 -0.3634 -1.0237 -0.0895 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 0.6777 1.1379 -3.4850 35 1 3.1299 -0.7216 1.2491 36 1 1.6766 -1.7488 1.2494 37 1 0.9941 0.7584 2.3564 38 1 0.6320 -0.6284 6.6524 39 1 2.0624 -1.4881 6.0246 40 1 2.5952 -0.0343 7.8734 41 1 3.4373 0.4078 6.4065 42 1 1.5214 4.2816 7.0972 43 1 2.5533 4.6875 5.7009 44 1 3.5010 3.3786 8.2943 45 1 3.7593 5.0806 7.8423 46 1 5.6649 2.1535 5.6510 47 1 4.6551 1.6599 7.0281 48 1 3.6736 2.9223 4.4256 49 1 3.5085 1.2162 4.8626 50 1 0.3121 3.2877 5.3539 51 1 1.4838 3.0865 4.0411 52 1 -0.3501 1.0909 5.3113 53 1 0.1229 1.2630 3.6333 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413861334.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:23 Heat of formation + Delta-G solvation = -119.974915 kcal Electronic energy + Delta-G solvation = -32893.246356 eV Core-core repulsion = 28765.081594 eV Total energy + Delta-G solvation = -4128.164761 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.27561 -40.86196 -38.85471 -38.14429 -36.48541 -35.27797 -34.72124 -32.78855 -32.30524 -31.40751 -29.87274 -27.59285 -27.46333 -26.62953 -26.44206 -24.78097 -23.67543 -22.78019 -21.03693 -20.85915 -20.64814 -19.31344 -18.11117 -17.85073 -17.57370 -17.17191 -16.76884 -16.66547 -16.39186 -16.30928 -16.09425 -15.54019 -15.37535 -15.10693 -14.87114 -14.54330 -14.47295 -14.29722 -13.96209 -13.79026 -13.47229 -13.28201 -13.23794 -13.17696 -13.11618 -12.84228 -12.70407 -12.59288 -12.32779 -12.26482 -12.18289 -12.08253 -11.94686 -11.71254 -11.50280 -11.32553 -11.11197 -10.98262 -10.84415 -10.71704 -10.41529 -10.21743 -10.08512 -9.46362 -8.03392 -6.18318 1.41886 1.45072 1.53105 1.62822 2.11695 2.45253 2.73466 2.93957 3.01650 3.20763 3.56820 3.58583 3.71220 3.92971 3.96866 4.09630 4.13597 4.22384 4.28674 4.37029 4.42979 4.43932 4.51418 4.52793 4.61072 4.68072 4.69895 4.72304 4.78496 4.83181 4.85123 4.90582 4.97118 4.99121 5.02554 5.04565 5.07018 5.09124 5.17181 5.26850 5.36016 5.53358 5.60498 5.65161 5.67064 5.95654 6.12079 6.18653 6.19622 6.42080 6.47129 6.85602 7.02471 7.49274 7.55760 8.96124 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017935 B = 0.002969 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.818916 B = 9429.832542 C = 9850.430102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.053 3.947 3 C -0.116 4.116 4 C -0.530 4.530 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.167 3.833 13 N -0.727 5.727 14 C 0.699 3.301 15 O -0.634 6.634 16 N -0.620 5.620 17 C 0.103 3.897 18 C 0.030 3.970 19 O -0.337 6.337 20 C 0.124 3.876 21 C -0.144 4.144 22 C 0.056 3.944 23 O -0.399 6.399 24 C 0.061 3.939 25 C -0.179 4.179 26 C -0.153 4.153 27 C 0.108 3.892 28 H 0.033 0.967 29 H 0.062 0.938 30 H 0.018 0.982 31 H 0.016 0.984 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.260 0.740 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.402 0.598 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.109 0.891 46 H 0.090 0.910 47 H 0.059 0.941 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.103 0.897 51 H 0.066 0.934 52 H 0.084 0.916 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.251 7.281 22.210 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.052 3.948 3 C -0.174 4.174 4 C -0.568 4.568 5 H 0.063 0.937 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.201 1.201 12 C 0.043 3.957 13 N -0.384 5.384 14 C 0.401 3.599 15 O -0.516 6.516 16 N -0.357 5.357 17 C -0.018 4.018 18 C -0.047 4.047 19 O -0.255 6.255 20 C 0.083 3.917 21 C -0.182 4.182 22 C -0.021 4.021 23 O -0.319 6.319 24 C -0.015 4.015 25 C -0.217 4.217 26 C -0.192 4.192 27 C -0.017 4.017 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.241 0.759 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.075 0.925 42 H 0.116 0.884 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.127 0.873 46 H 0.109 0.891 47 H 0.078 0.922 48 H 0.090 0.910 49 H 0.085 0.915 50 H 0.121 0.879 51 H 0.085 0.915 52 H 0.102 0.898 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.749 6.906 22.249 23.309 hybrid contribution 0.048 -0.624 -1.736 1.845 sum -0.702 6.282 20.513 21.465 Atomic orbital electron populations 1.21631 0.97078 0.99106 0.99573 1.18342 0.93212 0.92954 0.90247 1.21633 0.97800 0.97870 1.00056 1.21262 1.30584 1.13427 0.91539 0.93728 1.25439 0.95126 0.95555 1.00899 1.69920 1.37391 1.22773 1.23603 0.85751 0.78502 0.78630 0.79958 1.20496 1.20839 1.20092 1.21116 0.96663 0.94623 0.83297 1.45437 1.55649 1.33236 1.04075 1.16205 0.80449 0.82001 0.81220 1.90841 1.40625 1.33798 1.86342 1.47138 1.54509 1.28412 1.05667 1.21814 1.02253 0.97848 0.79886 1.21528 0.97067 0.83445 1.02649 1.86745 1.77090 1.19435 1.42232 1.21085 0.92164 0.90970 0.87483 1.22616 1.00136 0.94288 1.01152 1.22693 0.84159 1.01874 0.93331 1.87990 1.41054 1.31082 1.71737 1.22584 0.98203 0.84338 0.96393 1.22768 0.96206 1.02922 0.99827 1.23498 0.99781 0.96427 0.99511 1.20905 0.92900 0.85371 1.02563 0.94853 0.91939 0.96289 0.96459 0.91865 0.94978 0.93026 0.94775 0.94610 0.75854 0.88077 0.88872 0.86762 0.92479 0.88381 0.89816 0.92264 0.87271 0.89149 0.92244 0.91020 0.91468 0.87908 0.91522 0.89763 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 8.05 71.98 0.58 -4.57 16 2 C 0.05 2.47 0.50 -52.93 -0.03 2.44 16 3 C -0.12 -5.17 8.09 71.98 0.58 -4.58 16 4 C -0.53 -28.10 8.01 25.60 0.21 -27.89 16 5 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 6 C 0.03 1.57 5.14 84.66 0.44 2.00 16 7 N -0.90 -47.69 9.42 21.45 0.20 -47.49 16 8 Si 0.94 42.62 29.54 68.60 2.03 44.65 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.17 7.26 4.51 86.38 0.39 7.65 16 13 N -0.73 -25.87 4.77 -478.26 -2.28 -28.15 16 14 C 0.70 24.29 7.49 178.95 1.34 25.63 16 15 O -0.63 -26.87 15.85 -3.99 -0.06 -26.93 16 16 N -0.62 -15.63 1.81 -844.95 -1.53 -17.16 16 17 C 0.10 2.08 6.24 83.77 0.52 2.60 16 18 C 0.03 0.53 4.84 70.05 0.34 0.87 16 19 O -0.34 -6.03 9.28 -119.85 -1.11 -7.14 16 20 C 0.12 2.25 0.55 -9.52 -0.01 2.25 16 21 C -0.14 -2.16 4.76 31.04 0.15 -2.01 16 22 C 0.06 0.89 6.71 71.92 0.48 1.37 16 23 O -0.40 -8.74 10.81 -148.98 -1.61 -10.35 16 24 C 0.06 1.29 6.35 71.97 0.46 1.75 16 25 C -0.18 -4.01 3.88 30.61 0.12 -3.89 16 26 C -0.15 -2.67 5.13 31.74 0.16 -2.51 16 27 C 0.11 2.17 5.29 87.45 0.46 2.64 16 28 H 0.03 1.24 6.73 -2.39 -0.02 1.22 16 29 H 0.06 3.05 6.20 -2.38 -0.01 3.04 16 30 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 3.13 6.10 -2.38 -0.01 3.11 16 33 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 34 H 0.26 13.30 8.31 -92.71 -0.77 12.53 16 35 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.40 12.81 3.72 -92.71 -0.34 12.46 16 38 H 0.10 1.57 8.15 -2.32 -0.02 1.55 16 39 H 0.09 2.16 7.17 -2.31 -0.02 2.15 16 40 H 0.11 1.43 8.23 -1.65 -0.01 1.42 16 41 H 0.06 1.19 4.18 -2.70 -0.01 1.18 16 42 H 0.10 1.15 8.11 -2.46 -0.02 1.13 16 43 H 0.08 1.28 8.08 -2.47 -0.02 1.26 16 44 H 0.06 0.92 7.88 -2.41 -0.02 0.90 16 45 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.09 1.91 8.15 -2.32 -0.02 1.89 16 47 H 0.06 1.14 6.50 -2.43 -0.02 1.13 16 48 H 0.07 1.73 7.91 -2.03 -0.02 1.72 16 49 H 0.07 1.82 4.94 -2.68 -0.01 1.81 16 50 H 0.10 1.36 7.92 -2.05 -0.02 1.34 16 51 H 0.07 1.27 7.76 -2.08 -0.02 1.25 16 52 H 0.08 1.41 8.14 -1.98 -0.02 1.40 16 53 H 0.06 1.33 5.74 -1.97 -0.01 1.32 16 Total: -1.00 -63.03 383.61 2.40 -60.63 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.58 Total: 28.21 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 6.19 Total: 3.74 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -3.61 Total: -92.81 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -2.79 Total: -44.42 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -63.03 2.40 -60.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413861334.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.349 kcal (2) G-P(sol) polarization free energy of solvation -63.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds