Wall clock time and date at job start Sat Apr 11 2020 06:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47197 * 2 1 4 4 C 1.50703 * 109.47326 * 119.99831 * 2 1 3 5 5 H 1.08002 * 120.00390 * 118.39879 * 4 2 1 6 6 C 1.37879 * 119.99585 * 298.40300 * 4 2 1 7 7 N 1.31507 * 120.00132 * 2.89196 * 6 4 2 8 8 Si 1.86801 * 119.99622 * 182.61623 * 6 4 2 9 9 H 1.48498 * 109.47103 * 84.99666 * 8 6 4 10 10 H 1.48504 * 109.47084 * 204.99407 * 8 6 4 11 11 H 1.48499 * 109.47262 * 324.99562 * 8 6 4 12 12 C 1.53000 * 109.47414 * 239.99829 * 2 1 3 13 13 N 1.46497 * 109.47075 * 59.99981 * 12 2 1 14 14 C 1.34781 * 119.99954 * 180.02562 * 13 12 2 15 15 O 1.21587 * 120.00204 * 5.07319 * 14 13 12 16 16 N 1.34774 * 119.99850 * 185.06984 * 14 13 12 17 17 C 1.46919 * 120.63224 * 4.90392 * 16 14 13 18 18 C 1.53628 * 108.54425 * 126.36581 * 17 16 14 19 19 C 1.53040 * 109.23909 * 54.85811 * 18 17 16 20 20 O 1.42901 * 109.46082 * 178.48822 * 19 18 17 21 21 C 1.42898 * 114.00363 * 270.07035 * 20 19 18 22 22 H 1.09000 * 110.45275 * 27.39052 * 21 20 19 23 23 C 1.54512 * 110.51213 * 149.99796 * 21 20 19 24 24 C 1.54479 * 104.06079 * 118.64722 * 23 21 20 25 25 O 1.44417 * 104.80549 * 23.97663 * 24 23 21 26 26 C 1.44427 * 105.27624 * 319.48958 * 25 24 23 27 27 C 1.53036 * 109.53932 * 298.50943 * 19 18 17 28 28 C 1.46927 * 120.62844 * 185.18231 * 16 14 13 29 29 H 1.08993 * 109.47107 * 299.99991 * 1 2 3 30 30 H 1.09007 * 109.46913 * 60.00484 * 1 2 3 31 31 H 1.09003 * 109.46788 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47641 * 175.00441 * 3 2 1 33 33 H 1.09004 * 109.46809 * 295.00085 * 3 2 1 34 34 H 1.09002 * 109.47536 * 54.99978 * 3 2 1 35 35 H 0.97005 * 120.00160 * 179.72215 * 7 6 4 36 36 H 1.09004 * 109.47338 * 180.02562 * 12 2 1 37 37 H 1.09004 * 109.47145 * 299.99725 * 12 2 1 38 38 H 0.96997 * 120.00229 * 359.97438 * 13 12 2 39 39 H 1.09003 * 109.58865 * 246.19846 * 17 16 14 40 40 H 1.08999 * 109.58841 * 6.62609 * 17 16 14 41 41 H 1.08992 * 109.63393 * 294.86444 * 18 17 16 42 42 H 1.09001 * 109.43207 * 174.72310 * 18 17 16 43 43 H 1.08998 * 109.44930 * 58.52437 * 19 18 17 44 44 H 1.09004 * 110.50751 * 237.28843 * 23 21 20 45 45 H 1.08998 * 110.50994 * 359.97438 * 23 21 20 46 46 H 1.08997 * 110.37349 * 142.81320 * 24 23 21 47 47 H 1.09002 * 110.36579 * 265.14351 * 24 23 21 48 48 H 1.09004 * 110.37184 * 281.67925 * 26 25 24 49 49 H 1.09002 * 110.37346 * 159.34753 * 26 25 24 50 50 H 1.08996 * 109.49831 * 301.41533 * 27 19 18 51 51 H 1.08997 * 109.49894 * 181.31899 * 27 19 18 52 52 H 1.08997 * 109.58775 * 353.37350 * 28 16 14 53 53 H 1.09005 * 109.58624 * 113.80112 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6318 -1.6033 1.1317 6 6 1.7266 -0.2203 2.4825 7 7 0.9498 0.8338 2.6043 8 14 2.4097 -1.0583 4.0058 9 1 3.7706 -0.5362 4.2898 10 1 1.5217 -0.7813 5.1634 11 1 2.4799 -2.5236 3.7753 12 6 2.0400 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8770 -0.4915 -3.6695 15 8 2.4974 -1.5310 -3.7827 16 7 1.5144 0.1999 -4.7681 17 6 0.8593 1.5093 -4.6461 18 6 1.6477 2.5298 -5.4811 19 6 1.7683 2.0193 -6.9188 20 8 2.4706 2.9813 -7.7083 21 6 1.6256 3.9525 -8.3286 22 1 0.7166 4.0952 -7.7443 23 6 2.3755 5.2926 -8.4994 24 6 2.3968 5.5187 -10.0274 25 8 1.2757 4.7588 -10.5286 26 6 1.2826 3.5275 -9.7736 27 6 2.5344 0.6945 -6.9289 28 6 1.7612 -0.3442 -6.1104 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1263 1.4438 0.0895 33 1 1.7516 1.9298 -0.9314 34 1 1.6054 1.9816 0.8418 35 1 0.7314 1.1761 3.4853 36 1 3.1301 -0.7217 -1.2490 37 1 1.6767 -1.7490 -1.2492 38 1 0.9937 0.7577 -2.3565 39 1 -0.1636 1.4421 -5.0167 40 1 0.8519 1.8183 -3.6008 41 1 2.6430 2.6597 -5.0564 42 1 1.1224 3.4848 -5.4771 43 1 0.7724 1.8660 -7.3343 44 1 1.8359 6.0983 -8.0015 45 1 3.3907 5.2144 -8.1102 46 1 2.2707 6.5769 -10.2562 47 1 3.3286 5.1461 -10.4530 48 1 2.0434 2.8495 -10.1605 49 1 0.3004 3.0561 -9.8075 50 1 3.5215 0.8417 -6.4906 51 1 2.6404 0.3433 -7.9553 52 1 2.3491 -1.2587 -6.0315 53 1 0.8103 -0.5595 -6.5979 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001427711394.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:26 Heat of formation + Delta-G solvation = -139.092397 kcal Electronic energy + Delta-G solvation = -30837.684142 eV Core-core repulsion = 26708.690385 eV Total energy + Delta-G solvation = -4128.993758 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.54362 -40.65606 -39.22352 -38.19205 -37.10460 -35.11247 -33.44811 -32.59498 -31.93458 -31.59083 -29.57324 -27.56774 -27.50169 -26.92743 -25.42479 -24.44143 -23.73405 -22.20481 -22.08664 -20.66953 -20.62236 -19.35945 -18.23284 -17.80025 -17.47930 -17.15603 -16.66490 -16.65023 -16.49636 -16.05648 -15.70285 -15.45639 -15.27693 -15.09937 -14.94702 -14.64422 -14.55531 -14.19220 -14.05655 -13.77058 -13.57347 -13.21650 -13.14712 -13.11689 -13.07515 -12.72258 -12.67339 -12.59560 -12.34153 -12.29173 -12.24010 -12.13349 -11.86555 -11.75367 -11.48415 -11.44263 -11.32099 -11.09996 -10.87518 -10.70331 -10.40363 -10.39713 -10.12008 -9.47622 -8.02183 -6.16737 1.43254 1.45653 1.53207 1.69599 2.13640 2.46023 2.48896 3.03300 3.11644 3.21758 3.56330 3.71178 3.75868 3.86604 3.98047 4.02419 4.09709 4.25025 4.27538 4.29428 4.40479 4.43854 4.51617 4.54984 4.61437 4.70998 4.72775 4.76361 4.80148 4.81979 4.85103 4.91392 4.93941 5.01785 5.04007 5.04740 5.10397 5.11922 5.19517 5.26647 5.38151 5.56810 5.64029 5.67500 5.68489 5.72074 5.94899 6.14449 6.21564 6.29141 6.43788 6.86828 7.01762 7.50448 7.59363 8.97215 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022966 B = 0.002061 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.925465 B =13581.207767 C =14282.992751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.052 3.948 3 C -0.116 4.116 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.166 3.834 13 N -0.727 5.727 14 C 0.698 3.302 15 O -0.640 6.640 16 N -0.629 5.629 17 C 0.109 3.891 18 C -0.149 4.149 19 C 0.094 3.906 20 O -0.380 6.380 21 C 0.053 3.947 22 H 0.092 0.908 23 C -0.156 4.156 24 C 0.041 3.959 25 O -0.395 6.395 26 C 0.022 3.978 27 C -0.123 4.123 28 C 0.131 3.869 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.035 0.965 34 H 0.062 0.938 35 H 0.260 0.740 36 H 0.033 0.967 37 H 0.035 0.965 38 H 0.404 0.596 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.108 0.892 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.107 0.893 50 H 0.052 0.948 51 H 0.098 0.902 52 H 0.076 0.924 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 10.638 -24.345 26.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.051 3.949 3 C -0.174 4.174 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.042 3.958 13 N -0.384 5.384 14 C 0.399 3.601 15 O -0.523 6.523 16 N -0.367 5.367 17 C -0.013 4.013 18 C -0.188 4.188 19 C 0.036 3.964 20 O -0.300 6.300 21 C -0.005 4.005 22 H 0.110 0.890 23 C -0.193 4.193 24 C -0.035 4.035 25 O -0.314 6.314 26 C -0.055 4.055 27 C -0.161 4.161 28 C 0.008 3.992 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.243 0.757 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.126 0.874 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.125 0.875 50 H 0.071 0.929 51 H 0.116 0.884 52 H 0.094 0.906 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.368 10.083 -24.448 26.551 hybrid contribution 0.387 -0.351 1.490 1.579 sum -1.981 9.732 -22.958 25.014 Atomic orbital electron populations 1.21652 0.97026 0.98632 1.00252 1.18364 0.93327 0.93048 0.90184 1.21635 0.98219 0.97861 0.99690 1.21238 1.32912 1.10978 0.91526 0.93801 1.25442 0.95158 0.95646 1.00898 1.69907 1.36129 1.24017 1.23621 0.85783 0.78314 0.78924 0.79821 1.20482 1.20804 1.20201 1.21123 0.96555 0.94777 0.83355 1.45380 1.55698 1.33378 1.03958 1.16140 0.79500 0.83050 0.81403 1.90839 1.48375 1.26710 1.86333 1.47370 1.63888 1.20716 1.04744 1.21910 0.97135 0.81035 1.01263 1.22461 1.01261 0.99354 0.95688 1.22153 0.96227 0.87892 0.90080 1.88002 1.34589 1.41987 1.65403 1.23642 0.94412 0.88771 0.93693 0.88985 1.23058 1.02765 0.96271 0.97224 1.23557 0.89586 0.97912 0.92449 1.89124 1.50070 1.30774 1.61423 1.24035 1.03371 0.87598 0.90481 1.21925 0.99056 0.93713 1.01418 1.21522 1.01046 0.96718 0.79870 0.91769 0.94667 0.96381 0.96427 0.94619 0.91912 0.93017 0.94817 0.94705 0.75716 0.88359 0.90192 0.92550 0.88463 0.89442 0.88543 0.89505 0.87375 0.91902 0.91629 0.87480 0.92887 0.88384 0.90592 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 8.09 71.98 0.58 -4.63 16 2 C 0.05 2.39 0.50 -52.93 -0.03 2.36 16 3 C -0.12 -5.13 8.05 71.98 0.58 -4.55 16 4 C -0.53 -28.02 8.01 25.60 0.21 -27.82 16 5 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 6 C 0.03 1.50 5.14 84.66 0.44 1.93 16 7 N -0.90 -47.56 9.42 21.45 0.20 -47.36 16 8 Si 0.94 42.67 29.54 68.60 2.03 44.70 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.17 7.27 4.51 86.38 0.39 7.66 16 13 N -0.73 -25.92 4.78 -478.53 -2.29 -28.21 16 14 C 0.70 24.90 8.30 179.05 1.49 26.38 16 15 O -0.64 -28.40 15.77 -3.99 -0.06 -28.47 16 16 N -0.63 -15.83 2.97 -836.05 -2.48 -18.31 16 17 C 0.11 1.92 6.38 86.51 0.55 2.47 16 18 C -0.15 -2.29 5.71 30.82 0.18 -2.12 16 19 C 0.09 1.32 2.40 30.62 0.07 1.39 16 20 O -0.38 -6.02 9.62 -148.98 -1.43 -7.46 16 21 C 0.05 0.64 3.41 31.61 0.11 0.75 16 22 H 0.09 0.86 7.74 -2.39 -0.02 0.84 16 23 C -0.16 -1.73 6.90 31.61 0.22 -1.51 16 24 C 0.04 0.48 7.63 72.49 0.55 1.03 16 25 O -0.39 -6.45 11.65 -148.98 -1.74 -8.19 16 26 C 0.02 0.28 7.38 72.48 0.53 0.82 16 27 C -0.12 -2.09 5.73 30.67 0.18 -1.92 16 28 C 0.13 2.69 6.44 86.36 0.56 3.25 16 29 H 0.06 3.14 6.09 -2.39 -0.01 3.13 16 30 H 0.03 1.29 6.86 -2.38 -0.02 1.28 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.03 1.30 6.74 -2.38 -0.02 1.29 16 34 H 0.06 3.04 6.21 -2.39 -0.01 3.03 16 35 H 0.26 13.28 8.31 -92.70 -0.77 12.51 16 36 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.40 12.43 3.74 -92.71 -0.35 12.08 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.51 5.73 -2.39 -0.01 1.50 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.10 1.10 8.08 -2.39 -0.02 1.08 16 43 H 0.09 0.85 7.79 -2.39 -0.02 0.83 16 44 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 45 H 0.09 1.07 8.00 -2.39 -0.02 1.05 16 46 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 0.89 8.08 -2.38 -0.02 0.87 16 49 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.08 1.97 6.99 -2.39 -0.02 1.95 16 53 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -66.44 403.59 1.37 -65.08 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.54 Total: 22.70 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 6.60 Total: 5.52 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -4.56 Total: -93.88 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -3.23 Total: -44.11 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -66.44 1.37 -65.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001427711394.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.016 kcal (2) G-P(sol) polarization free energy of solvation -66.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds