Wall clock time and date at job start Sat Apr 11 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46856 * 2 1 4 4 C 1.50700 * 109.47136 * 119.99638 * 2 1 3 5 5 O 1.21282 * 120.00068 * 120.00001 * 4 2 1 6 6 N 1.34778 * 120.00379 * 300.00452 * 4 2 1 7 7 C 1.46491 * 120.00335 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47304 * 179.97438 * 7 6 4 9 9 O 1.42896 * 110.88917 * 303.88259 * 8 7 6 10 10 C 1.55156 * 111.00672 * 180.02562 * 8 7 6 11 11 C 1.54322 * 102.94542 * 206.39139 * 10 8 7 12 12 N 1.47016 * 107.40169 * 22.11215 * 11 10 8 13 13 C 1.36935 * 125.64824 * 181.10494 * 12 11 10 14 14 H 1.08009 * 119.99965 * 173.88672 * 13 12 11 15 15 C 1.38807 * 120.00079 * 353.88343 * 13 12 11 16 16 N 1.31617 * 119.99906 * 6.82734 * 15 13 12 17 17 Si 1.86807 * 120.00016 * 186.82351 * 15 13 12 18 18 H 1.48501 * 109.46673 * 94.98788 * 17 15 13 19 19 H 1.48498 * 109.46962 * 214.98492 * 17 15 13 20 20 H 1.48490 * 109.47113 * 334.98916 * 17 15 13 21 21 C 1.47747 * 108.53089 * 1.18323 * 12 11 10 22 22 C 1.52994 * 109.47132 * 239.99827 * 2 1 3 23 23 H 1.08997 * 109.48194 * 299.97650 * 22 2 1 24 24 C 1.53096 * 109.48137 * 59.99965 * 22 2 1 25 25 C 1.53178 * 109.16353 * 177.59060 * 24 22 2 26 26 C 1.53173 * 109.03752 * 303.02077 * 25 24 22 27 27 C 1.53099 * 109.16578 * 56.97818 * 26 25 24 28 28 O 1.42902 * 109.48044 * 179.97438 * 22 2 1 29 29 H 1.09001 * 109.47291 * 299.99956 * 1 2 3 30 30 H 1.08996 * 109.47043 * 60.00252 * 1 2 3 31 31 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46997 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47394 * 299.99608 * 3 2 1 34 34 H 1.09000 * 109.47615 * 59.99738 * 3 2 1 35 35 H 0.97010 * 119.99559 * 359.97438 * 6 4 2 36 36 H 1.09004 * 109.46942 * 59.99937 * 7 6 4 37 37 H 1.09000 * 109.47709 * 299.99967 * 7 6 4 38 38 H 0.96708 * 113.99871 * 56.11856 * 9 8 7 39 39 H 1.09000 * 110.72008 * 88.01977 * 10 8 7 40 40 H 1.09003 * 110.71860 * 324.75235 * 10 8 7 41 41 H 1.08998 * 109.88471 * 141.61061 * 11 10 8 42 42 H 1.08999 * 109.88004 * 262.62071 * 11 10 8 43 43 H 0.97003 * 119.99609 * 179.97438 * 16 15 13 44 44 H 1.09000 * 110.29824 * 216.94324 * 21 12 11 45 45 H 1.09003 * 110.52443 * 94.67246 * 21 12 11 46 46 H 1.08998 * 109.52109 * 297.49505 * 24 22 2 47 47 H 1.08999 * 109.52310 * 57.68511 * 24 22 2 48 48 H 1.09003 * 109.54279 * 62.88540 * 25 24 22 49 49 H 1.08998 * 109.54221 * 183.15522 * 25 24 22 50 50 H 1.08997 * 109.52259 * 176.88597 * 26 25 24 51 51 H 1.09004 * 109.52432 * 297.01472 * 26 25 24 52 52 H 1.09001 * 109.47523 * 62.37615 * 27 26 25 53 53 H 1.08990 * 109.48177 * 182.40834 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7297 -1.6964 1.1193 6 7 1.7068 -0.2499 2.4546 7 6 2.1946 -0.9407 3.6508 8 6 1.6852 -0.2190 4.9000 9 8 2.0704 1.1569 4.8862 10 6 2.1827 -0.9224 6.1904 11 6 1.1012 -0.5497 7.2262 12 7 -0.1177 -0.1992 6.4826 13 6 -1.3010 0.2100 7.0370 14 1 -2.1097 0.5396 6.4015 15 6 -1.4611 0.2011 8.4158 16 7 -0.4363 -0.0708 9.1956 17 14 -3.1312 0.5752 9.1646 18 1 -3.8515 -0.6964 9.4280 19 1 -2.9477 1.3135 10.4399 20 1 -3.9218 1.4057 8.2211 21 6 0.1492 -0.3648 5.0389 22 6 2.0401 -0.7213 -1.2492 23 1 1.6772 -1.7490 -1.2491 24 6 1.5299 0.0002 -2.4994 25 6 2.0935 -0.6916 -3.7444 26 6 3.6230 -0.7004 -3.6618 27 6 4.0524 -1.3948 -2.3666 28 8 3.4691 -0.7209 -1.2497 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.1493 0.5390 2.5436 36 1 3.2847 -0.9411 3.6509 37 1 1.8310 -1.9683 3.6507 38 1 1.7818 1.6383 4.0987 39 1 3.1554 -0.5332 6.4913 40 1 2.2253 -2.0024 6.0490 41 1 0.9052 -1.3997 7.8798 42 1 1.4328 0.3037 7.8176 43 1 -0.5482 -0.0766 10.1592 44 1 -0.3587 0.4132 4.4688 45 1 -0.1703 -1.3509 4.7018 46 1 0.4408 -0.0380 -2.5230 47 1 1.8584 1.0393 -2.4799 48 1 1.7250 -1.7164 -3.7904 49 1 1.7797 -0.1494 -4.6363 50 1 4.0308 -1.2396 -4.5167 51 1 3.9940 0.3246 -3.6668 52 1 3.7160 -2.4315 -2.3813 53 1 5.1386 -1.3661 -2.2817 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500677375.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:12 Heat of formation + Delta-G solvation = -141.307902 kcal Electronic energy + Delta-G solvation = -31662.688280 eV Core-core repulsion = 27533.598451 eV Total energy + Delta-G solvation = -4129.089829 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.68314 -40.42547 -39.49290 -36.78636 -36.37560 -35.17502 -34.45445 -34.01275 -31.49029 -30.86132 -29.61919 -28.29037 -27.44553 -25.97347 -25.68021 -24.91881 -23.11197 -22.11183 -21.42330 -21.16245 -20.24440 -18.86688 -18.55508 -17.43553 -17.23176 -17.08089 -16.71420 -16.52489 -16.29715 -15.77810 -15.75280 -15.47095 -15.36983 -15.09786 -14.97636 -14.59052 -14.37448 -13.95302 -13.85536 -13.78607 -13.51447 -13.31941 -13.25562 -13.20632 -12.95452 -12.92837 -12.78099 -12.54395 -12.36550 -12.13355 -12.09393 -12.00672 -11.98444 -11.81596 -11.77363 -11.69445 -11.42522 -11.15023 -10.95649 -10.67154 -10.64202 -10.23374 -10.11146 -8.87904 -7.85291 -5.19891 1.46211 1.48583 1.57252 1.69953 2.10154 2.49402 2.82923 3.16718 3.34067 3.44656 3.57113 3.62055 3.69424 3.92946 3.95126 3.98536 4.00156 4.04634 4.09984 4.17094 4.30153 4.37120 4.47875 4.57905 4.63563 4.66414 4.68176 4.75190 4.79600 4.82652 4.90289 4.92010 4.94790 4.95714 4.97168 5.02120 5.07989 5.09905 5.12550 5.20780 5.30802 5.35358 5.36713 5.45523 5.47539 5.63453 5.75069 6.18856 6.38962 6.51357 6.80318 7.09151 7.26688 7.76441 8.42027 9.26046 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.024457 B = 0.002354 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.571819 B =11892.483731 C =12526.298460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.069 4.069 3 C -0.136 4.136 4 C 0.521 3.479 5 O -0.569 6.569 6 N -0.717 5.717 7 C 0.120 3.880 8 C 0.123 3.877 9 O -0.551 6.551 10 C -0.122 4.122 11 C 0.190 3.810 12 N -0.621 5.621 13 C -0.240 4.240 14 H 0.086 0.914 15 C -0.069 4.069 16 N -0.952 5.952 17 Si 0.979 3.021 18 H -0.288 1.288 19 H -0.297 1.297 20 H -0.264 1.264 21 C 0.114 3.886 22 C 0.113 3.887 23 H 0.040 0.960 24 C -0.149 4.149 25 C -0.123 4.123 26 C -0.151 4.151 27 C 0.056 3.944 28 O -0.388 6.388 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.408 0.592 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.381 0.619 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.011 0.989 42 H 0.004 0.996 43 H 0.246 0.754 44 H 0.055 0.945 45 H 0.034 0.966 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.060 0.940 49 H 0.084 0.916 50 H 0.084 0.916 51 H 0.071 0.929 52 H 0.040 0.960 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.692 1.857 -28.748 29.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C -0.194 4.194 4 C 0.309 3.691 5 O -0.447 6.447 6 N -0.371 5.371 7 C -0.004 4.004 8 C 0.081 3.919 9 O -0.358 6.358 10 C -0.161 4.161 11 C 0.064 3.936 12 N -0.347 5.347 13 C -0.369 4.369 14 H 0.104 0.896 15 C -0.262 4.262 16 N -0.600 5.600 17 Si 0.807 3.193 18 H -0.215 1.215 19 H -0.224 1.224 20 H -0.188 1.188 21 C -0.011 4.011 22 C 0.055 3.945 23 H 0.058 0.942 24 C -0.186 4.186 25 C -0.161 4.161 26 C -0.189 4.189 27 C -0.021 4.021 28 O -0.308 6.308 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.245 0.755 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.230 0.770 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.030 0.970 42 H 0.022 0.978 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.051 0.949 46 H 0.111 0.889 47 H 0.102 0.898 48 H 0.079 0.921 49 H 0.103 0.897 50 H 0.103 0.897 51 H 0.090 0.910 52 H 0.058 0.942 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.467 1.112 -27.905 28.457 hybrid contribution -1.117 0.140 0.565 1.259 sum 4.350 1.252 -27.340 27.712 Atomic orbital electron populations 1.21985 0.89777 1.03214 1.05116 1.20885 0.98297 0.97504 0.90524 1.21872 1.01396 0.91806 1.04288 1.20997 0.79143 0.83959 0.85014 1.90687 1.38859 1.28065 1.87125 1.45841 1.53880 1.32407 1.04986 1.21660 0.99458 0.96441 0.82890 1.22383 0.93588 0.82154 0.93746 1.86633 1.80109 1.21542 1.47510 1.22796 0.99330 1.00203 0.93727 1.20824 0.84666 0.96399 0.91669 1.44706 1.09898 1.78739 1.01366 1.19467 0.90710 1.36044 0.90657 0.89585 1.25715 1.01150 1.02632 0.96713 1.70214 1.30185 1.56747 1.02901 0.85045 0.79227 0.77395 0.77589 1.21507 1.22419 1.18834 1.22385 0.94007 0.98915 0.85798 1.21820 0.81440 0.97473 0.93743 0.94191 1.22347 1.02132 1.00772 0.93371 1.21617 0.94993 1.01118 0.98338 1.22166 0.96947 1.01991 0.97751 1.22636 0.98543 0.94904 0.86021 1.87945 1.19602 1.77242 1.45978 0.90369 0.88372 0.92574 0.93100 0.89073 0.90757 0.75513 0.91152 0.90904 0.77000 0.90033 0.88881 0.97033 0.97799 0.94477 0.92645 0.94851 0.88877 0.89825 0.92142 0.89748 0.89699 0.91029 0.94211 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.02 71.98 0.58 -1.22 16 2 C -0.07 -1.21 0.48 -52.93 -0.03 -1.23 16 3 C -0.14 -1.91 7.87 71.98 0.57 -1.35 16 4 C 0.52 13.24 6.33 87.66 0.56 13.79 16 5 O -0.57 -19.53 15.28 14.40 0.22 -19.31 16 6 N -0.72 -16.31 4.98 -463.07 -2.31 -18.62 16 7 C 0.12 3.34 4.88 86.38 0.42 3.76 16 8 C 0.12 4.05 0.97 -9.40 -0.01 4.04 16 9 O -0.55 -18.06 13.20 -148.98 -1.97 -20.03 16 10 C -0.12 -4.62 6.15 31.78 0.20 -4.43 16 11 C 0.19 9.67 5.37 86.73 0.47 10.13 16 12 N -0.62 -31.79 3.40 -691.18 -2.35 -34.15 16 13 C -0.24 -13.39 10.28 84.03 0.86 -12.52 16 14 H 0.09 4.51 7.84 -2.91 -0.02 4.48 16 15 C -0.07 -3.98 5.48 84.86 0.47 -3.51 16 16 N -0.95 -58.43 10.36 21.65 0.22 -58.21 16 17 Si 0.98 45.87 29.56 68.60 2.03 47.90 16 18 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 19 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 20 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 21 C 0.11 4.37 6.23 86.79 0.54 4.91 16 22 C 0.11 2.15 1.45 30.62 0.04 2.20 16 23 H 0.04 0.91 8.10 -2.39 -0.02 0.89 16 24 C -0.15 -1.76 4.70 30.69 0.14 -1.62 16 25 C -0.12 -1.34 6.03 30.71 0.19 -1.16 16 26 C -0.15 -1.85 6.14 30.69 0.19 -1.66 16 27 C 0.06 1.01 6.84 72.02 0.49 1.50 16 28 O -0.39 -9.18 8.63 -131.54 -1.14 -10.32 16 29 H 0.08 0.86 7.56 -2.39 -0.02 0.85 16 30 H 0.10 0.75 6.49 -2.39 -0.02 0.74 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.94 7.68 -2.38 -0.02 0.92 16 33 H 0.09 0.89 6.38 -2.38 -0.02 0.87 16 34 H 0.07 0.83 7.56 -2.39 -0.02 0.81 16 35 H 0.41 7.21 6.11 -92.70 -0.57 6.65 16 36 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 38 H 0.38 8.85 7.69 -74.05 -0.57 8.28 16 39 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.09 3.14 8.04 -2.39 -0.02 3.12 16 41 H 0.01 0.65 7.36 -2.39 -0.02 0.64 16 42 H 0.00 0.22 7.54 -2.39 -0.02 0.20 16 43 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 44 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.03 1.27 7.98 -2.39 -0.02 1.25 16 46 H 0.09 0.79 6.57 -2.39 -0.02 0.77 16 47 H 0.08 0.90 6.31 -2.39 -0.02 0.88 16 48 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 53 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -77.82 401.00 0.15 -77.67 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -0.23 Total: 23.42 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 5.67 Total: 11.64 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -4.44 Total: -110.97 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -2.88 Total: -49.66 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -77.82 0.15 -77.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500677375.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.638 kcal (2) G-P(sol) polarization free energy of solvation -77.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds