Wall clock time and date at job start Sat Apr 11 2020 06:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47395 * 2 1 4 4 C 1.52994 * 109.47521 * 120.00726 * 2 1 3 5 5 O 1.42901 * 109.47292 * 64.99185 * 4 2 1 6 6 C 1.42898 * 113.99848 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47180 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47306 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00096 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99877 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99756 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47018 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.82101 * 59.43669 * 12 11 10 14 14 C 1.54468 * 109.83023 * 180.42332 * 12 11 10 15 15 C 1.55511 * 102.38641 * 140.87803 * 14 12 11 16 16 C 1.53881 * 100.75645 * 327.02646 * 15 14 12 17 17 C 1.52378 * 115.68080 * 263.23256 * 16 15 14 18 18 N 1.47280 * 87.70337 * 218.74937 * 17 16 15 19 19 C 1.36927 * 135.93628 * 206.18043 * 18 17 16 20 20 H 1.08006 * 120.00208 * 6.47422 * 19 18 17 21 21 C 1.38815 * 120.00352 * 186.47863 * 19 18 17 22 22 N 1.31618 * 119.99817 * 6.41305 * 21 19 18 23 23 Si 1.86799 * 120.00085 * 186.41286 * 21 19 18 24 24 H 1.48504 * 109.47051 * 265.01587 * 23 21 19 25 25 H 1.48494 * 109.47274 * 25.01873 * 23 21 19 26 26 H 1.48503 * 109.46714 * 145.02204 * 23 21 19 27 27 C 1.47278 * 88.12529 * 26.43517 * 18 17 16 28 28 O 1.42408 * 106.66965 * 34.98141 * 16 15 14 29 29 H 1.08997 * 109.47510 * 59.99806 * 1 2 3 30 30 H 1.08998 * 109.47514 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46917 * 299.99729 * 1 2 3 32 32 H 1.09008 * 109.46598 * 240.00056 * 2 1 3 33 33 H 1.08997 * 109.47343 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46950 * 300.00538 * 3 2 1 35 35 H 1.09001 * 109.46867 * 60.00240 * 3 2 1 36 36 H 1.09004 * 109.46721 * 304.99912 * 4 2 1 37 37 H 1.08996 * 109.47617 * 185.00173 * 4 2 1 38 38 H 1.09001 * 109.47731 * 60.00282 * 6 5 4 39 39 H 1.09004 * 109.47793 * 300.00117 * 6 5 4 40 40 H 1.08999 * 109.47151 * 60.00099 * 7 6 5 41 41 H 1.09003 * 109.47503 * 300.00260 * 7 6 5 42 42 H 0.97002 * 120.00481 * 0.02562 * 10 8 7 43 43 H 1.09005 * 109.47330 * 60.00386 * 11 10 8 44 44 H 1.08999 * 109.47094 * 300.00116 * 11 10 8 45 45 H 1.08996 * 110.82519 * 259.10099 * 14 12 11 46 46 H 1.08996 * 110.82549 * 22.45638 * 14 12 11 47 47 H 1.08995 * 111.15898 * 209.15325 * 15 14 12 48 48 H 1.09005 * 111.15591 * 84.90369 * 15 14 12 49 49 H 1.08997 * 113.50955 * 104.04378 * 17 16 15 50 50 H 1.08998 * 113.57370 * 333.46730 * 17 16 15 51 51 H 0.96991 * 120.00313 * 180.02562 * 22 21 19 52 52 H 1.08993 * 113.51275 * 88.27972 * 27 18 17 53 53 H 1.09002 * 113.50938 * 218.85735 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 8 1.6619 -2.0982 1.1918 6 6 2.0914 -2.8662 2.3178 7 6 1.6344 -4.3167 2.1500 8 6 2.0879 -5.1267 3.3372 9 8 2.7145 -4.5961 4.2298 10 7 1.7962 -6.4407 3.4074 11 6 2.2366 -7.2280 4.5617 12 6 1.7796 -8.6786 4.3939 13 1 2.2027 -9.0960 3.4802 14 6 2.2307 -9.5144 5.6122 15 6 1.0077 -10.4452 5.8493 16 6 -0.1445 -9.5212 5.4172 17 6 -0.8517 -8.7767 6.5430 18 7 -2.1154 -9.0092 5.8231 19 6 -3.3345 -8.3901 5.7503 20 1 -3.4890 -7.4417 6.2435 21 6 -4.3721 -8.9813 5.0426 22 7 -4.2255 -10.1925 4.5487 23 14 -5.9764 -8.0580 4.7913 24 1 -6.9443 -8.4511 5.8467 25 1 -5.7242 -6.5968 4.8703 26 1 -6.5361 -8.3924 3.4570 27 6 -1.4966 -10.2023 5.2209 28 8 0.3463 -8.7342 4.3366 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8932 -0.5139 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2619 2.1369 37 1 3.1263 -0.6444 1.2950 38 1 1.6576 -2.4512 3.2276 39 1 3.1788 -2.8339 2.3863 40 1 2.0685 -4.7315 1.2404 41 1 0.5470 -4.3495 2.0813 42 1 1.2947 -6.8651 2.6937 43 1 1.8027 -6.8130 5.4715 44 1 3.3239 -7.1956 4.6301 45 1 3.1206 -10.0970 5.3743 46 1 2.4080 -8.8747 6.4767 47 1 0.9194 -10.7187 6.9007 48 1 1.0595 -11.3317 5.2172 49 1 -0.5760 -7.7242 6.6087 50 1 -0.7985 -9.2877 7.5043 51 1 -4.9502 -10.6055 4.0539 52 1 -1.6198 -11.1050 5.8191 53 1 -1.7635 -10.3491 4.1743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570230110.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:33 Heat of formation + Delta-G solvation = -109.479088 kcal Electronic energy + Delta-G solvation = -29856.300145 eV Core-core repulsion = 25728.590517 eV Total energy + Delta-G solvation = -4127.709628 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.52427 -40.73138 -39.23762 -38.13565 -36.11155 -35.61638 -34.16939 -33.16437 -32.62600 -30.66153 -28.72437 -28.02660 -27.03545 -26.55360 -25.66958 -24.25386 -23.05110 -22.49709 -21.41017 -20.96907 -20.49539 -18.72005 -18.50400 -17.76672 -17.45706 -17.12826 -17.03518 -16.91485 -16.38301 -16.22216 -15.76710 -15.63554 -15.41794 -15.14666 -14.76935 -14.67566 -14.27657 -14.16683 -14.02084 -13.88300 -13.65399 -13.40358 -13.19429 -13.09109 -12.99611 -12.82476 -12.71076 -12.55128 -12.44218 -12.42350 -12.27684 -12.15117 -11.94521 -11.76387 -11.64395 -11.52200 -11.33059 -11.25309 -11.00235 -10.92131 -10.61839 -10.25324 -10.10885 -8.94722 -7.95030 -5.25464 1.42190 1.44460 1.53934 1.55821 1.97987 2.44950 2.68376 2.91305 3.28644 3.43344 3.53330 3.72838 3.75758 3.85726 3.89068 3.94035 3.95960 4.01646 4.11587 4.23444 4.29075 4.43431 4.47161 4.51001 4.57996 4.58849 4.61688 4.70995 4.72150 4.79543 4.80694 4.82197 4.84011 4.90985 4.98094 4.99661 5.00716 5.04067 5.13051 5.17865 5.21573 5.26640 5.32633 5.38820 5.40730 5.42332 5.48685 5.89032 6.17945 6.36339 6.48460 6.88417 7.16381 7.56694 8.58412 9.24315 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008712 B = 0.002479 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.093062 B =11292.585015 C =14037.266431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.143 4.143 4 C 0.061 3.939 5 O -0.400 6.400 6 C 0.084 3.916 7 C -0.134 4.134 8 C 0.516 3.484 9 O -0.587 6.587 10 N -0.714 5.714 11 C 0.115 3.885 12 C 0.061 3.939 13 H 0.107 0.893 14 C -0.132 4.132 15 C -0.129 4.129 16 C 0.081 3.919 17 C 0.103 3.897 18 N -0.637 5.637 19 C -0.229 4.229 20 H 0.077 0.923 21 C -0.066 4.066 22 N -0.952 5.952 23 Si 0.979 3.021 24 H -0.284 1.284 25 H -0.271 1.271 26 H -0.290 1.290 27 C 0.165 3.835 28 O -0.362 6.362 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.057 0.943 40 H 0.125 0.875 41 H 0.106 0.894 42 H 0.414 0.586 43 H 0.048 0.952 44 H 0.093 0.907 45 H 0.117 0.883 46 H 0.085 0.915 47 H 0.097 0.903 48 H 0.091 0.909 49 H 0.036 0.964 50 H 0.059 0.941 51 H 0.250 0.750 52 H 0.040 0.960 53 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.464 11.826 -7.030 23.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.200 4.200 4 C -0.016 4.016 5 O -0.320 6.320 6 C 0.007 3.993 7 C -0.173 4.173 8 C 0.304 3.696 9 O -0.468 6.468 10 N -0.365 5.365 11 C -0.008 4.008 12 C 0.003 3.997 13 H 0.125 0.875 14 C -0.170 4.170 15 C -0.167 4.167 16 C 0.040 3.960 17 C -0.022 4.022 18 N -0.363 5.363 19 C -0.357 4.357 20 H 0.095 0.905 21 C -0.259 4.259 22 N -0.601 5.601 23 Si 0.806 3.194 24 H -0.210 1.210 25 H -0.196 1.196 26 H -0.217 1.217 27 C 0.040 3.960 28 O -0.281 6.281 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.143 0.857 41 H 0.124 0.876 42 H 0.250 0.750 43 H 0.066 0.934 44 H 0.111 0.889 45 H 0.135 0.865 46 H 0.104 0.896 47 H 0.116 0.884 48 H 0.110 0.890 49 H 0.055 0.945 50 H 0.076 0.924 51 H 0.058 0.942 52 H 0.057 0.943 53 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 19.336 12.280 -6.788 23.890 hybrid contribution -1.486 0.043 0.138 1.493 sum 17.849 12.323 -6.651 22.687 Atomic orbital electron populations 1.21793 0.94887 1.01652 1.01956 1.21126 0.96523 0.96533 0.97087 1.21770 1.01475 0.93979 1.02796 1.22756 0.99094 0.80889 0.98822 1.87782 1.79291 1.21451 1.43443 1.21996 0.98805 0.90280 0.88250 1.21433 1.04458 0.93927 0.97510 1.20761 0.78578 0.82440 0.87811 1.90673 1.42741 1.71512 1.41860 1.45896 1.57020 1.09091 1.24522 1.21811 1.00081 0.90475 0.88476 1.23347 0.81126 0.93929 1.01289 0.87548 1.23087 0.99150 0.97679 0.97113 1.22959 0.92063 0.98065 1.03632 1.22969 0.93954 0.91405 0.87688 1.22947 0.85547 0.98451 0.95282 1.45953 1.10588 1.28916 1.50865 1.19246 0.87136 1.01207 1.28129 0.90508 1.25637 1.01318 0.97374 1.01599 1.70006 1.33273 1.14915 1.41892 0.85063 0.79197 0.78123 0.76967 1.21050 1.19577 1.21662 1.22032 0.87141 0.89884 0.96977 1.88330 1.20395 1.71997 1.47397 0.91712 0.93408 0.92914 0.90572 0.91830 0.91134 0.92301 0.93331 0.92441 0.93870 0.92512 0.85710 0.87559 0.75037 0.93400 0.88867 0.86487 0.89641 0.88406 0.89025 0.94526 0.92359 0.94153 0.94276 0.95430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.09 71.98 0.65 -1.67 16 2 C -0.09 -1.40 3.16 -10.80 -0.03 -1.43 16 3 C -0.14 -1.53 9.19 71.98 0.66 -0.87 16 4 C 0.06 1.06 5.32 71.98 0.38 1.45 16 5 O -0.40 -8.79 9.88 -148.98 -1.47 -10.27 16 6 C 0.08 1.87 5.23 71.98 0.38 2.25 16 7 C -0.13 -2.80 6.07 29.85 0.18 -2.61 16 8 C 0.52 13.66 7.83 87.66 0.69 14.35 16 9 O -0.59 -19.51 15.98 -3.04 -0.05 -19.55 16 10 N -0.71 -17.52 5.47 -463.03 -2.53 -20.05 16 11 C 0.12 2.78 5.23 86.38 0.45 3.23 16 12 C 0.06 1.40 3.62 31.10 0.11 1.52 16 13 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 14 C -0.13 -2.42 6.56 31.96 0.21 -2.21 16 15 C -0.13 -3.11 6.49 31.76 0.21 -2.91 16 16 C 0.08 2.95 1.56 -10.81 -0.02 2.93 16 17 C 0.10 4.33 8.24 83.47 0.69 5.02 16 18 N -0.64 -34.42 3.77 -739.95 -2.79 -37.21 16 19 C -0.23 -13.57 10.73 84.04 0.90 -12.67 16 20 H 0.08 4.42 7.84 -2.91 -0.02 4.40 16 21 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 22 N -0.95 -59.16 11.82 21.65 0.26 -58.91 16 23 Si 0.98 47.38 29.56 68.60 2.03 49.40 16 24 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 25 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 27 C 0.17 8.01 6.79 83.57 0.57 8.57 16 28 O -0.36 -12.83 10.69 -148.98 -1.59 -14.42 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.92 7.82 -2.39 -0.02 0.90 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 39 H 0.06 1.24 8.10 -2.38 -0.02 1.22 16 40 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.41 9.21 8.40 -92.71 -0.78 8.43 16 43 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.12 1.36 8.14 -2.39 -0.02 1.35 16 46 H 0.08 1.49 7.85 -2.39 -0.02 1.48 16 47 H 0.10 2.12 7.93 -2.39 -0.02 2.10 16 48 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 49 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.06 2.23 7.99 -2.39 -0.02 2.22 16 51 H 0.25 14.96 8.31 -92.72 -0.77 14.19 16 52 H 0.04 1.89 8.13 -2.39 -0.02 1.87 16 53 H 0.03 1.51 7.62 -2.39 -0.02 1.50 16 Total: -1.00 -77.76 427.44 0.43 -77.33 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.09 Total: 22.20 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 6.49 Total: 11.48 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -5.07 Total: -116.17 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -3.11 Total: -44.24 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.40 kcal Total: -77.76 0.43 -77.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570230110.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.149 kcal (2) G-P(sol) polarization free energy of solvation -77.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds