Wall clock time and date at job start Sat Apr 11 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47089 * 2 1 4 4 C 1.46509 * 119.99756 * 270.00039 * 3 2 1 5 5 C 1.50697 * 109.47094 * 269.99893 * 4 3 2 6 6 H 1.08008 * 120.00166 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00193 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99676 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00140 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46865 * 60.00063 * 9 7 5 11 11 H 1.48498 * 109.47046 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46940 * 299.99636 * 9 7 5 13 13 C 1.34773 * 120.00316 * 89.99881 * 3 2 1 14 14 O 1.21275 * 120.00278 * 179.97438 * 13 3 2 15 15 C 1.50706 * 119.99516 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.46671 * 185.61093 * 15 13 3 17 17 C 1.46901 * 110.99550 * 208.95708 * 16 15 13 18 18 C 1.53003 * 109.46776 * 152.33394 * 17 16 15 19 19 C 1.52998 * 117.49630 * 243.78973 * 18 17 16 20 20 C 1.53002 * 117.49965 * 175.13149 * 18 17 16 21 21 C 1.46903 * 110.99679 * 85.00651 * 16 15 13 22 22 C 1.52995 * 109.47411 * 312.12947 * 21 16 15 23 23 C 1.53004 * 109.46809 * 192.13084 * 21 16 15 24 24 C 1.52999 * 109.47204 * 56.38503 * 23 21 16 25 25 C 1.50700 * 109.47237 * 72.13000 * 21 16 15 26 26 O 1.20831 * 119.99826 * 146.71124 * 25 21 16 27 27 O 1.34224 * 120.00025 * 326.71152 * 25 21 16 28 28 H 1.08995 * 109.47260 * 299.99746 * 1 2 3 29 29 H 1.09007 * 109.47094 * 60.00169 * 1 2 3 30 30 H 1.08997 * 109.46952 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47166 * 239.99944 * 2 1 3 32 32 H 1.08996 * 109.47517 * 120.00111 * 2 1 3 33 33 H 1.08995 * 109.47394 * 30.00117 * 4 3 2 34 34 H 1.08998 * 109.46933 * 150.00084 * 4 3 2 35 35 H 0.97001 * 119.99849 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.47137 * 65.61080 * 15 13 3 37 37 H 1.09000 * 109.46856 * 305.61090 * 15 13 3 38 38 H 1.08999 * 109.46923 * 272.32751 * 17 16 15 39 39 H 1.08995 * 109.47381 * 32.33061 * 17 16 15 40 40 H 1.08998 * 115.55188 * 29.45559 * 18 17 16 41 41 H 1.09007 * 117.50076 * 0.02562 * 19 18 17 42 42 H 1.09003 * 117.49893 * 145.01779 * 19 18 17 43 43 H 1.08996 * 117.50171 * 214.98107 * 20 18 17 44 44 H 1.09004 * 117.49560 * 359.97438 * 20 18 17 45 45 H 1.09000 * 109.47445 * 176.09027 * 22 21 16 46 46 H 1.09002 * 109.46896 * 296.09051 * 22 21 16 47 47 H 1.08994 * 109.47138 * 56.08768 * 22 21 16 48 48 H 1.08995 * 109.46981 * 176.38852 * 23 21 16 49 49 H 1.08998 * 109.46831 * 296.38186 * 23 21 16 50 50 H 1.08998 * 109.46681 * 65.74153 * 24 23 21 51 51 H 1.08999 * 109.47177 * 185.74175 * 24 23 21 52 52 H 1.08997 * 109.46848 * 305.74330 * 24 23 21 53 53 H 0.96706 * 116.99989 * 174.99311 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7039 6 1 4.3426 1.2302 -1.0962 7 6 4.1493 2.3904 -2.8775 8 7 3.3496 3.1273 -3.6171 9 14 5.9134 2.0963 -3.4171 10 1 6.1401 0.6396 -3.5955 11 1 6.1613 2.7974 -4.7025 12 1 6.8412 2.6187 -2.3821 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1598 1.1671 15 6 1.9923 1.3059 2.4723 16 7 2.1807 2.2457 3.5855 17 6 2.6240 1.5439 4.7975 18 6 3.4439 2.4981 5.6682 19 6 4.9164 2.1536 5.9005 20 6 3.9030 1.9884 7.0359 21 6 0.9541 3.0128 3.8402 22 6 0.4114 3.5606 2.5188 23 6 1.2666 4.1756 4.7843 24 6 2.3783 5.0370 4.1820 25 6 -0.0776 2.1150 4.4732 26 8 -0.8576 2.5652 5.2787 27 8 -0.1299 0.8153 4.1422 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.5817 1.6877 -2.0285 34 1 2.0955 3.1410 -1.1385 35 1 3.6756 3.5177 -4.4431 36 1 2.6919 0.4765 2.5745 37 1 0.9714 0.9242 2.4878 38 1 1.7540 1.1990 5.3563 39 1 3.2387 0.6884 4.5177 40 1 3.1806 3.5527 5.5866 41 1 5.3011 1.2473 5.4327 42 1 5.6218 2.9815 5.9721 43 1 3.9421 2.7077 7.8539 44 1 3.6206 0.9734 7.3154 45 1 -0.5351 4.0706 2.6981 46 1 1.1285 4.2639 2.0952 47 1 0.2543 2.7377 1.8215 48 1 0.3715 4.7820 4.9225 49 1 1.5922 3.7837 5.7479 50 1 2.0167 5.5108 3.2694 51 1 2.6716 5.8046 4.8982 52 1 3.2385 4.4094 3.9493 53 1 -0.7581 0.2635 4.6280 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596299739.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:58 Heat of formation + Delta-G solvation = -95.352511 kcal Electronic energy + Delta-G solvation = -33192.876651 eV Core-core repulsion = 29065.779597 eV Total energy + Delta-G solvation = -4127.097054 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.39923 -40.56805 -39.22709 -37.44487 -37.30744 -36.62537 -34.89848 -34.29467 -31.61042 -31.03151 -30.02813 -28.35952 -26.59457 -25.64019 -24.47233 -23.98296 -23.66523 -23.13793 -21.69712 -20.33520 -19.74210 -19.21439 -18.56997 -18.10283 -17.70725 -17.38529 -16.90745 -16.78958 -16.45206 -16.03582 -15.70275 -15.48967 -14.95395 -14.79741 -14.63783 -14.43243 -14.29443 -14.22483 -13.87951 -13.52657 -13.42726 -13.23483 -13.09352 -13.00377 -12.99637 -12.70426 -12.63904 -12.52849 -12.48172 -12.45620 -12.29341 -12.18448 -12.09660 -11.95467 -11.80983 -11.69838 -11.60961 -11.50796 -10.99850 -10.73532 -10.58735 -10.35150 -9.35721 -9.24835 -8.16240 -6.30366 1.02873 1.38741 1.42901 1.49762 1.91010 2.04245 2.23575 2.43386 2.82088 3.09505 3.13105 3.55650 3.67058 3.76187 3.88835 4.06849 4.08546 4.15709 4.21016 4.32292 4.42301 4.46391 4.48428 4.53930 4.55487 4.56862 4.60729 4.67886 4.69842 4.82090 4.85653 4.91394 4.98602 5.03809 5.06131 5.10799 5.12470 5.13729 5.28618 5.32515 5.35292 5.40085 5.42511 5.49636 5.66027 5.66982 5.81009 5.94881 6.02710 6.15482 6.78681 6.88823 6.97750 7.36537 7.71923 8.89804 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.003853 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.423188 B = 7266.066109 C = 8127.511215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.101 3.899 3 N -0.609 5.609 4 C 0.268 3.732 5 C -0.536 4.536 6 H 0.052 0.948 7 C 0.009 3.991 8 N -0.930 5.930 9 Si 0.963 3.037 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.278 1.278 13 C 0.500 3.500 14 O -0.562 6.562 15 C 0.040 3.960 16 N -0.502 5.502 17 C 0.088 3.912 18 C -0.178 4.178 19 C -0.180 4.180 20 C -0.168 4.168 21 C 0.134 3.866 22 C -0.145 4.145 23 C -0.099 4.099 24 C -0.141 4.141 25 C 0.466 3.534 26 O -0.537 6.537 27 O -0.506 6.506 28 H 0.056 0.944 29 H 0.037 0.963 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.015 0.985 34 H -0.003 1.003 35 H 0.265 0.735 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.052 0.948 39 H 0.088 0.912 40 H 0.123 0.877 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.051 0.949 48 H 0.073 0.927 49 H 0.085 0.915 50 H 0.041 0.959 51 H 0.066 0.934 52 H 0.067 0.933 53 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 -8.259 20.524 22.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.342 5.342 4 C 0.147 3.853 5 C -0.575 4.575 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.570 5.570 9 Si 0.787 3.213 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.204 1.204 13 C 0.288 3.712 14 O -0.440 6.440 15 C -0.090 4.090 16 N -0.225 5.225 17 C -0.039 4.039 18 C -0.197 4.197 19 C -0.217 4.217 20 C -0.206 4.206 21 C 0.042 3.958 22 C -0.203 4.203 23 C -0.136 4.136 24 C -0.198 4.198 25 C 0.307 3.693 26 O -0.425 6.425 27 O -0.321 6.321 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.033 0.967 34 H 0.015 0.985 35 H 0.074 0.926 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.140 0.860 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.085 0.915 46 H 0.103 0.897 47 H 0.070 0.930 48 H 0.091 0.909 49 H 0.103 0.897 50 H 0.060 0.940 51 H 0.085 0.915 52 H 0.086 0.914 53 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -4.801 -6.891 20.207 21.883 hybrid contribution -0.259 -0.605 -0.517 0.837 sum -5.060 -7.497 19.691 21.669 Atomic orbital electron populations 1.22141 0.94994 1.03287 1.01342 1.21670 0.94981 0.81904 1.03596 1.48252 1.64872 1.14864 1.06213 1.18588 0.94797 0.91501 0.80458 1.21698 0.98020 1.31536 1.06251 0.92954 1.25797 1.01992 0.94646 0.96570 1.70047 1.37683 1.34414 1.14826 0.85546 0.79567 0.78900 0.77257 1.18588 1.20628 1.20410 1.21013 0.77535 0.86902 0.85793 1.90612 1.46230 1.19689 1.87486 1.22318 1.04625 0.94128 0.87943 1.61484 1.28764 1.26573 1.05707 1.21909 0.98278 0.95161 0.88561 1.22908 0.97074 1.01594 0.98086 1.23023 0.92255 1.03295 1.03140 1.23037 1.03159 1.02944 0.91412 1.21375 0.84897 0.92985 0.96503 1.22221 1.01550 1.02119 0.94375 1.21637 1.00094 0.94380 0.97512 1.21724 0.98801 0.99231 1.00016 1.24932 0.83630 0.81991 0.78706 1.90681 1.41576 1.76157 1.34118 1.84659 1.62913 1.20925 1.63556 0.92525 0.94422 0.88821 0.91220 0.88519 0.96671 0.98452 0.92617 0.86775 0.87670 0.93054 0.89401 0.85968 0.88844 0.89098 0.88060 0.88026 0.91540 0.89681 0.92991 0.90870 0.89651 0.93996 0.91498 0.91392 0.71547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 10.18 71.98 0.73 -3.12 16 2 C 0.10 2.98 5.85 86.38 0.51 3.48 16 3 N -0.61 -24.80 2.46 -826.15 -2.03 -26.83 16 4 C 0.27 14.25 5.16 85.63 0.44 14.69 16 5 C -0.54 -30.64 9.39 25.60 0.24 -30.40 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.50 5.46 84.65 0.46 0.96 16 8 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 9 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 13 C 0.50 19.54 5.54 87.66 0.49 20.02 16 14 O -0.56 -27.03 13.43 -3.01 -0.04 -27.07 16 15 C 0.04 1.08 3.13 85.56 0.27 1.35 16 16 N -0.50 -13.04 2.80 -855.43 -2.40 -15.43 16 17 C 0.09 1.77 4.82 86.30 0.42 2.19 16 18 C -0.18 -3.54 4.34 -10.79 -0.05 -3.59 16 19 C -0.18 -3.35 10.18 30.62 0.31 -3.04 16 20 C -0.17 -2.60 10.25 30.62 0.31 -2.29 16 21 C 0.13 3.48 0.37 2.78 0.00 3.48 16 22 C -0.15 -4.48 6.80 71.98 0.49 -3.99 16 23 C -0.10 -2.39 3.82 30.60 0.12 -2.28 16 24 C -0.14 -3.70 8.22 71.98 0.59 -3.10 16 25 C 0.47 10.73 5.44 71.24 0.39 11.12 16 26 O -0.54 -14.73 16.96 21.95 0.37 -14.36 16 27 O -0.51 -8.03 9.43 -51.36 -0.48 -8.51 16 28 H 0.06 1.29 7.13 -2.39 -0.02 1.28 16 29 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 2.21 8.07 -2.38 -0.02 2.19 16 32 H 0.10 2.17 6.60 -2.39 -0.02 2.15 16 33 H 0.02 0.84 8.07 -2.39 -0.02 0.82 16 34 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 35 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.11 2.64 6.87 -2.39 -0.02 2.62 16 37 H 0.11 2.45 3.65 -2.39 -0.01 2.44 16 38 H 0.05 0.94 5.61 -2.39 -0.01 0.93 16 39 H 0.09 1.61 7.07 -2.39 -0.02 1.60 16 40 H 0.12 2.66 3.33 -2.39 -0.01 2.65 16 41 H 0.09 1.70 8.03 -2.38 -0.02 1.68 16 42 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.08 3.16 4.69 -2.39 -0.01 3.15 16 47 H 0.05 1.68 5.36 -2.39 -0.01 1.66 16 48 H 0.07 1.77 7.98 -2.39 -0.02 1.75 16 49 H 0.09 1.88 5.51 -2.39 -0.01 1.87 16 50 H 0.04 1.25 6.73 -2.39 -0.02 1.24 16 51 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.07 2.04 6.09 -2.39 -0.01 2.03 16 53 H 0.42 2.93 9.11 -74.05 -0.67 2.25 16 Total: -1.00 -74.87 398.62 3.71 -71.17 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.26 Total: 24.61 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 5.72 Total: 5.48 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -4.14 Total: -98.34 kcal Atomic # 8 Polarization: -49.79 SS G_CDS: -0.15 Total: -49.94 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -74.87 3.71 -71.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299739.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.185 kcal (2) G-P(sol) polarization free energy of solvation -74.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds