Wall clock time and date at job start Sat Apr 11 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46518 * 2 1 4 4 C 1.50694 * 109.47180 * 239.99972 * 2 1 3 5 5 O 1.20823 * 120.00154 * 239.99544 * 4 2 1 6 6 O 1.34236 * 120.00186 * 59.99806 * 4 2 1 7 7 C 1.52996 * 109.47277 * 119.99398 * 2 1 3 8 8 H 1.09006 * 109.49499 * 60.07298 * 7 2 1 9 9 C 1.53041 * 109.49964 * 300.00508 * 7 2 1 10 10 C 1.53045 * 109.53690 * 178.64810 * 9 7 2 11 11 C 1.53196 * 109.31052 * 61.36532 * 10 9 7 12 12 N 1.46929 * 108.77704 * 305.36263 * 11 10 9 13 13 C 1.34766 * 120.63251 * 233.58683 * 12 11 10 14 14 O 1.21283 * 120.00125 * 179.97438 * 13 12 11 15 15 C 1.50706 * 119.99959 * 359.97438 * 13 12 11 16 16 H 1.08998 * 109.46632 * 40.00247 * 15 13 12 17 17 N 1.46905 * 109.46917 * 159.99974 * 15 13 12 18 18 C 1.52997 * 109.47290 * 280.00105 * 15 13 12 19 19 C 1.52992 * 109.47482 * 175.00042 * 18 15 13 20 20 C 1.52997 * 109.47482 * 179.97438 * 19 18 15 21 21 C 1.50701 * 109.47212 * 179.97438 * 20 19 18 22 22 H 1.07998 * 120.00129 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99861 * 179.97438 * 21 20 19 24 24 N 1.31510 * 119.99913 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99734 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47294 * 60.00559 * 25 23 21 27 27 H 1.48503 * 109.46954 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47431 * 300.00157 * 25 23 21 29 29 C 1.46925 * 118.73335 * 53.86107 * 12 11 10 30 30 H 1.08993 * 109.47449 * 299.99915 * 1 2 3 31 31 H 1.08996 * 109.47183 * 60.00579 * 1 2 3 32 32 H 1.09004 * 109.46972 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46616 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.46920 * 299.99581 * 3 2 1 35 35 H 1.08993 * 109.47191 * 59.99926 * 3 2 1 36 36 H 0.96703 * 116.99986 * 180.02562 * 6 4 2 37 37 H 1.09003 * 109.46028 * 58.62977 * 9 7 2 38 38 H 1.08999 * 109.45764 * 298.66699 * 9 7 2 39 39 H 1.09001 * 109.49990 * 301.41808 * 10 9 7 40 40 H 1.08994 * 109.52498 * 181.32937 * 10 9 7 41 41 H 1.08998 * 109.58303 * 185.57858 * 11 10 9 42 42 H 1.09001 * 109.58351 * 65.14904 * 11 10 9 43 43 H 1.00898 * 110.99783 * 60.00065 * 17 15 13 44 44 H 1.00904 * 110.99734 * 183.95235 * 17 15 13 45 45 H 1.09002 * 109.47153 * 54.99825 * 18 15 13 46 46 H 1.09001 * 109.46832 * 295.00016 * 18 15 13 47 47 H 1.09002 * 109.47103 * 59.99753 * 19 18 15 48 48 H 1.08998 * 109.46862 * 300.00565 * 19 18 15 49 49 H 1.09002 * 109.47153 * 59.99783 * 20 19 18 50 50 H 1.09001 * 109.46832 * 299.99974 * 20 19 18 51 51 H 0.97002 * 119.99768 * 179.97438 * 24 23 21 52 52 H 1.08997 * 109.59018 * 65.92950 * 29 12 11 53 53 H 1.09007 * 109.58691 * 186.35112 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7270 -1.6927 -1.1196 6 8 1.7080 -0.2518 -2.4496 7 6 2.0400 -0.7211 1.2493 8 1 1.6780 -1.7493 1.2491 9 6 1.5302 -0.0001 2.4992 10 6 2.0119 -0.7402 3.7492 11 6 3.5435 -0.7378 3.7806 12 7 4.0433 -1.2980 2.5176 13 6 4.9178 -2.3234 2.5196 14 8 5.3225 -2.7773 1.4703 15 6 5.3927 -2.9061 3.8258 16 1 4.5580 -2.9593 4.5247 17 7 5.9250 -4.2558 3.5950 18 6 6.4921 -2.0175 4.4110 19 6 6.8870 -2.5387 5.7941 20 6 7.9868 -1.6504 6.3790 21 6 8.3753 -2.1635 7.7417 22 1 7.8870 -3.0361 8.1496 23 6 9.3551 -1.5194 8.4673 24 7 9.9501 -0.4571 7.9704 25 14 9.8371 -2.1558 10.1560 26 1 10.3371 -3.5490 10.0359 27 1 10.9045 -1.2936 10.7238 28 1 8.6525 -2.1306 11.0513 29 6 3.5762 -0.7149 1.2525 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9563 -0.8900 35 1 1.6765 1.9564 0.8899 36 1 2.0535 -0.7411 -3.2089 37 1 0.4404 0.0210 2.4871 38 1 1.9129 1.0204 2.5113 39 1 1.6502 -1.7681 3.7256 40 1 1.6291 -0.2401 4.6388 41 1 3.8928 -1.3472 4.6141 42 1 3.9050 0.2841 3.8955 43 1 6.7004 -4.2333 2.9498 44 1 6.1907 -4.6932 4.4646 45 1 6.1244 -0.9952 4.4993 46 1 7.3618 -2.0353 3.7541 47 1 7.2547 -3.5610 5.7058 48 1 6.0173 -2.5210 6.4509 49 1 7.6196 -0.6279 6.4673 50 1 8.8564 -1.6687 5.7220 51 1 10.6391 -0.0038 8.4810 52 1 3.9404 0.3088 1.1654 53 1 3.9471 -1.3091 0.4173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603249534.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:12 Heat of formation + Delta-G solvation = -177.949503 kcal Electronic energy + Delta-G solvation = -31262.199953 eV Core-core repulsion = 27131.521225 eV Total energy + Delta-G solvation = -4130.678728 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.14981 -41.12679 -39.15725 -37.42962 -37.13799 -36.50868 -35.28335 -33.18133 -33.01333 -31.25716 -29.41201 -28.46661 -27.41653 -26.32408 -25.30295 -24.39502 -23.73549 -22.27943 -21.73700 -19.99854 -19.84514 -18.86980 -18.64351 -18.45575 -17.48245 -17.21062 -16.68781 -16.54286 -16.30217 -16.04911 -15.99185 -15.52155 -15.44523 -14.99719 -14.88265 -14.61751 -14.40956 -14.23471 -14.05202 -13.96211 -13.66814 -13.56198 -13.41535 -13.01760 -12.90857 -12.90495 -12.66751 -12.58382 -12.54939 -12.43898 -12.36026 -12.15309 -11.83786 -11.81233 -11.64147 -11.54677 -11.50257 -11.39984 -11.25285 -10.99912 -10.66654 -10.55138 -9.73318 -9.59372 -8.19790 -6.31092 1.18365 1.40798 1.43487 1.51239 1.57020 1.92939 2.07397 2.41234 3.13575 3.41860 3.46901 3.62360 3.65335 3.81360 3.91127 3.96373 4.02304 4.08801 4.10779 4.21170 4.32910 4.34364 4.39794 4.50457 4.62207 4.65535 4.74222 4.76917 4.81040 4.86152 4.91568 4.94480 4.98913 5.01042 5.03178 5.13053 5.13768 5.16895 5.22856 5.30117 5.40155 5.48657 5.51602 5.54717 5.64823 5.72394 5.84891 6.00808 6.23851 6.38200 6.46328 6.86452 6.96532 7.16529 7.38546 8.91723 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020950 B = 0.002201 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.191189 B =12716.636419 C =13187.093148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 C -0.146 4.146 4 C 0.478 3.522 5 O -0.546 6.546 6 O -0.508 6.508 7 C -0.073 4.073 8 H 0.058 0.942 9 C -0.113 4.113 10 C -0.130 4.130 11 C 0.089 3.911 12 N -0.606 5.606 13 C 0.516 3.484 14 O -0.578 6.578 15 C 0.086 3.914 16 H 0.121 0.879 17 N -0.833 5.833 18 C -0.133 4.133 19 C -0.092 4.092 20 C 0.025 3.975 21 C -0.541 4.541 22 H 0.064 0.936 23 C -0.003 4.003 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.269 1.269 27 H -0.286 1.286 28 H -0.263 1.263 29 C 0.099 3.901 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.423 0.577 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.344 0.656 44 H 0.357 0.643 45 H 0.072 0.928 46 H 0.043 0.957 47 H 0.054 0.946 48 H 0.067 0.933 49 H -0.006 1.006 50 H -0.018 1.018 51 H 0.263 0.737 52 H 0.075 0.925 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.330 5.670 -15.199 30.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.045 4.045 3 C -0.203 4.203 4 C 0.321 3.679 5 O -0.436 6.436 6 O -0.321 6.321 7 C -0.093 4.093 8 H 0.077 0.923 9 C -0.150 4.150 10 C -0.168 4.168 11 C -0.032 4.032 12 N -0.339 5.339 13 C 0.304 3.696 14 O -0.457 6.457 15 C -0.029 4.029 16 H 0.139 0.861 17 N -0.365 5.365 18 C -0.173 4.173 19 C -0.130 4.130 20 C -0.012 4.012 21 C -0.579 4.579 22 H 0.082 0.918 23 C -0.200 4.200 24 N -0.575 5.575 25 Si 0.788 3.212 26 H -0.194 1.194 27 H -0.211 1.211 28 H -0.188 1.188 29 C -0.024 4.024 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.284 0.716 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.124 0.876 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.157 0.843 44 H 0.173 0.827 45 H 0.091 0.909 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.086 0.914 49 H 0.012 0.988 50 H 0.000 1.000 51 H 0.071 0.929 52 H 0.093 0.907 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.687 5.329 -15.651 30.547 hybrid contribution 2.274 -0.392 0.327 2.331 sum -23.412 4.938 -15.323 28.413 Atomic orbital electron populations 1.21938 0.89252 1.03069 1.05262 1.20582 0.99445 0.97007 0.87445 1.22049 1.01142 0.91731 1.05366 1.24086 0.76041 0.81838 0.85906 1.90786 1.37169 1.28128 1.87563 1.84475 1.71897 1.58936 1.16818 1.21405 0.93718 0.99556 0.94589 0.92313 1.21762 1.02430 0.99612 0.91159 1.21929 0.93310 1.01732 0.99865 1.22190 0.96073 1.00259 0.84709 1.48133 1.43961 1.33352 1.08422 1.20958 0.78309 0.79181 0.91130 1.90643 1.58364 1.61557 1.35115 1.21398 0.98614 0.89648 0.93205 0.86106 1.58703 1.41845 1.17721 1.18278 1.22228 0.97566 1.00213 0.97281 1.21420 0.98766 0.98916 0.93901 1.18985 0.93178 0.94596 0.94439 1.21686 1.20289 1.12943 1.03004 0.91809 1.26000 0.96295 0.95158 1.02557 1.70097 1.26602 1.20996 1.39835 0.85516 0.78132 0.78310 0.79193 1.19358 1.21137 1.18792 1.22118 0.94960 0.98625 0.86656 0.88129 0.90218 0.92768 0.92985 0.90134 0.88103 0.71578 0.88467 0.89406 0.92141 0.87584 0.89105 0.89801 0.84321 0.82697 0.90916 0.93780 0.92773 0.91442 0.98757 0.99986 0.92853 0.90675 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.05 71.98 0.58 -0.54 16 2 C -0.04 -0.57 0.52 -52.93 -0.03 -0.60 16 3 C -0.15 -1.40 7.71 71.98 0.55 -0.84 16 4 C 0.48 9.17 6.65 71.23 0.47 9.64 16 5 O -0.55 -15.92 14.47 21.97 0.32 -15.60 16 6 O -0.51 -6.63 13.23 -51.48 -0.68 -7.31 16 7 C -0.07 -1.25 1.35 -10.57 -0.01 -1.27 16 8 H 0.06 1.31 8.10 -2.38 -0.02 1.29 16 9 C -0.11 -1.14 4.46 30.62 0.14 -1.01 16 10 C -0.13 -1.63 6.08 30.67 0.19 -1.44 16 11 C 0.09 1.64 5.58 86.36 0.48 2.12 16 12 N -0.61 -15.77 2.97 -818.06 -2.43 -18.19 16 13 C 0.52 17.21 6.95 87.66 0.61 17.82 16 14 O -0.58 -24.35 15.66 -3.04 -0.05 -24.39 16 15 C 0.09 2.56 2.36 44.17 0.10 2.67 16 16 H 0.12 3.06 6.54 -2.39 -0.02 3.04 16 17 N -0.83 -25.47 8.94 -171.79 -1.54 -27.00 16 18 C -0.13 -4.43 4.61 30.59 0.14 -4.29 16 19 C -0.09 -3.52 4.92 30.59 0.15 -3.37 16 20 C 0.03 1.29 4.97 29.85 0.15 1.44 16 21 C -0.54 -30.13 9.11 25.60 0.23 -29.90 16 22 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 23 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 24 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 25 Si 0.96 43.69 29.54 68.60 2.03 45.72 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 28 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 29 C 0.10 2.43 5.09 86.51 0.44 2.87 16 30 H 0.10 0.37 6.40 -2.39 -0.02 0.35 16 31 H 0.08 0.54 8.11 -2.39 -0.02 0.52 16 32 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.05 0.66 6.32 -2.39 -0.02 0.64 16 34 H 0.08 0.64 8.11 -2.39 -0.02 0.62 16 35 H 0.10 0.53 6.46 -2.39 -0.02 0.51 16 36 H 0.42 2.76 9.10 -74.06 -0.67 2.08 16 37 H 0.10 0.56 6.36 -2.39 -0.02 0.55 16 38 H 0.09 0.67 6.50 -2.39 -0.02 0.65 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 40 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 1.70 5.19 -2.39 -0.01 1.69 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.34 11.25 8.58 -89.70 -0.77 10.48 16 44 H 0.36 9.79 7.55 -89.69 -0.68 9.12 16 45 H 0.07 2.31 7.20 -2.39 -0.02 2.30 16 46 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.05 2.00 6.87 -2.39 -0.02 1.98 16 48 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 49 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 50 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 51 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 52 H 0.08 1.62 6.20 -2.39 -0.01 1.60 16 53 H 0.08 2.53 4.58 -2.38 -0.01 2.52 16 Total: -1.00 -81.14 402.63 1.43 -79.71 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: -1.17 Total: 29.98 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 4.66 Total: -6.38 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -3.68 Total: -101.72 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -0.41 Total: -47.31 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -81.14 1.43 -79.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603249534.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.238 kcal (2) G-P(sol) polarization free energy of solvation -81.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds