Wall clock time and date at job start Sat Apr 11 2020 06:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46973 * 2 1 4 4 C 1.50696 * 109.47078 * 240.00453 * 2 1 3 5 5 H 1.08003 * 120.00076 * 240.00070 * 4 2 1 6 6 C 1.37882 * 120.00149 * 59.99793 * 4 2 1 7 7 N 1.31513 * 119.99965 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00032 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47323 * 89.99725 * 8 6 4 10 10 H 1.48503 * 109.46856 * 209.99674 * 8 6 4 11 11 H 1.48503 * 109.46969 * 329.99445 * 8 6 4 12 12 C 1.52994 * 109.47517 * 120.00083 * 2 1 3 13 13 N 1.46508 * 109.47215 * 300.00474 * 12 2 1 14 14 C 1.34777 * 119.99894 * 180.02562 * 13 12 2 15 15 O 1.21586 * 120.00056 * 5.06633 * 14 13 12 16 16 N 1.34773 * 119.99690 * 185.07100 * 14 13 12 17 17 C 1.46924 * 120.64350 * 174.96396 * 16 14 13 18 18 C 1.53191 * 108.77398 * 233.67139 * 17 16 14 19 19 C 1.53034 * 109.33519 * 305.37355 * 18 17 16 20 20 C 1.53017 * 109.56842 * 61.28405 * 19 18 17 21 21 C 1.46931 * 120.64332 * 354.97525 * 16 14 13 22 22 C 1.53089 * 109.38563 * 181.24485 * 19 18 17 23 23 C 1.53169 * 109.23497 * 177.50522 * 22 19 18 24 24 H 1.08998 * 109.54842 * 62.95588 * 23 22 19 25 25 O 1.42900 * 109.54410 * 183.13791 * 23 22 19 26 26 C 1.53188 * 109.03146 * 303.00193 * 23 22 19 27 27 C 1.53095 * 109.14116 * 57.01799 * 26 23 22 28 28 O 1.42899 * 109.42366 * 302.36602 * 27 26 23 29 29 H 1.09000 * 109.46843 * 299.99588 * 1 2 3 30 30 H 1.08994 * 109.47502 * 59.99637 * 1 2 3 31 31 H 1.09002 * 109.46767 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47209 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47303 * 300.00484 * 3 2 1 34 34 H 1.09007 * 109.46924 * 60.00142 * 3 2 1 35 35 H 0.96997 * 120.00125 * 179.97438 * 7 6 4 36 36 H 1.08998 * 109.47654 * 180.02562 * 12 2 1 37 37 H 1.09000 * 109.47063 * 59.99623 * 12 2 1 38 38 H 0.97000 * 119.99561 * 359.97438 * 13 12 2 39 39 H 1.08999 * 109.58838 * 113.87942 * 17 16 14 40 40 H 1.09004 * 109.58648 * 353.45362 * 17 16 14 41 41 H 1.08998 * 109.49025 * 185.41423 * 18 17 16 42 42 H 1.08999 * 109.51774 * 65.34690 * 18 17 16 43 43 H 1.08998 * 109.49073 * 58.68244 * 20 19 18 44 44 H 1.08997 * 109.49010 * 178.76108 * 20 19 18 45 45 H 1.08992 * 109.59424 * 246.12383 * 21 16 14 46 46 H 1.08995 * 109.58723 * 6.41461 * 21 16 14 47 47 H 1.09003 * 109.51783 * 57.56232 * 22 19 18 48 48 H 1.09002 * 109.51692 * 297.44844 * 22 19 18 49 49 H 0.96703 * 113.99835 * 180.02562 * 25 23 22 50 50 H 1.09000 * 109.52324 * 176.91638 * 26 23 22 51 51 H 1.09001 * 109.52633 * 297.05212 * 26 23 22 52 52 H 1.09007 * 109.47625 * 62.35263 * 27 26 23 53 53 H 1.08997 * 109.47761 * 182.37455 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3428 -2.1615 -4.4120 10 1 2.4864 -0.1410 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8779 -0.4909 3.6695 15 8 2.6511 -1.4224 3.7827 16 7 1.3468 0.0814 4.7681 17 6 1.6048 -0.4769 6.1024 18 6 0.2641 -0.7273 6.7998 19 6 -0.5526 0.5669 6.8073 20 6 -0.8303 1.0060 5.3680 21 6 0.4982 1.2755 4.6545 22 6 -1.8798 0.3260 7.5314 23 6 -2.6671 1.6385 7.5917 24 1 -2.9083 1.9658 6.5804 25 8 -3.8742 1.4383 8.3299 26 6 -1.8119 2.7026 8.2865 27 6 -0.4882 2.8538 7.5324 28 8 0.1791 1.5911 7.4859 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9564 0.8901 35 1 0.7087 1.1614 -3.4843 36 1 3.1301 -0.7208 1.2494 37 1 1.6768 -1.7489 1.2492 38 1 0.9943 0.7581 2.3564 39 1 2.1943 0.2298 6.6865 40 1 2.1479 -1.4172 6.0063 41 1 0.4424 -1.0509 7.8253 42 1 -0.2859 -1.5014 6.2646 43 1 -1.3707 0.2170 4.8449 44 1 -1.4307 1.9157 5.3748 45 1 0.9977 2.1245 5.1210 46 1 0.3128 1.4933 3.6028 47 1 -1.6834 -0.0277 8.5436 48 1 -2.4593 -0.4219 6.9903 49 1 -4.4236 2.2303 8.4077 50 1 -2.3428 3.6546 8.2850 51 1 -1.6142 2.3973 9.3140 52 1 -0.6855 3.1983 6.5172 53 1 0.1421 3.5794 8.0464 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650034256.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:36 Heat of formation + Delta-G solvation = -147.311534 kcal Electronic energy + Delta-G solvation = -31930.594353 eV Core-core repulsion = 27801.244187 eV Total energy + Delta-G solvation = -4129.350166 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.95203 -40.78558 -38.45794 -37.87390 -36.90139 -35.12772 -33.95445 -33.06139 -32.49933 -31.89766 -29.65799 -27.56178 -27.45524 -26.74164 -25.26520 -24.58318 -24.40106 -22.42758 -20.95895 -20.62616 -20.28706 -19.34048 -18.36961 -17.80490 -17.17575 -17.00187 -16.85878 -16.63747 -16.35995 -16.00705 -15.51259 -15.46955 -15.32841 -15.06645 -14.83938 -14.64463 -14.35907 -14.23770 -14.05103 -13.91341 -13.42186 -13.24378 -13.12748 -13.08942 -13.03259 -12.76152 -12.67664 -12.58659 -12.29961 -12.25090 -12.18732 -12.12864 -11.96130 -11.66215 -11.48141 -11.31264 -11.21333 -11.06662 -10.70879 -10.69924 -10.47382 -10.39139 -10.08801 -9.41361 -8.01639 -6.16853 1.43229 1.46052 1.54213 1.71525 2.17249 2.46635 2.74763 3.03056 3.14727 3.22084 3.58393 3.65719 3.76324 3.92122 3.98803 4.06609 4.16385 4.26102 4.32830 4.37688 4.41929 4.48423 4.52939 4.54479 4.68070 4.72523 4.74153 4.81813 4.84486 4.86015 4.89929 4.98500 5.01634 5.02672 5.05352 5.08820 5.11642 5.20206 5.24684 5.31490 5.39053 5.57952 5.64396 5.67715 5.68404 5.99152 6.15712 6.22306 6.31090 6.44743 6.86307 6.86931 7.03735 7.50662 7.60912 8.97483 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020073 B = 0.002501 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.548256 B =11193.758755 C =11820.475617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.053 3.947 3 C -0.119 4.119 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.167 3.833 13 N -0.727 5.727 14 C 0.698 3.302 15 O -0.640 6.640 16 N -0.624 5.624 17 C 0.135 3.865 18 C -0.114 4.114 19 C 0.133 3.867 20 C -0.159 4.159 21 C 0.114 3.886 22 C -0.134 4.134 23 C 0.101 3.899 24 H 0.069 0.931 25 O -0.585 6.585 26 C -0.180 4.180 27 C 0.053 3.947 28 O -0.380 6.380 29 H 0.034 0.966 30 H 0.064 0.936 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.064 0.936 34 H 0.034 0.966 35 H 0.260 0.740 36 H 0.033 0.967 37 H 0.035 0.965 38 H 0.403 0.597 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.395 0.605 50 H 0.096 0.904 51 H 0.068 0.932 52 H 0.066 0.934 53 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.715 8.339 22.711 26.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.052 3.948 3 C -0.177 4.177 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.042 3.958 13 N -0.385 5.385 14 C 0.399 3.601 15 O -0.523 6.523 16 N -0.362 5.362 17 C 0.013 3.987 18 C -0.152 4.152 19 C 0.093 3.907 20 C -0.197 4.197 21 C -0.009 4.009 22 C -0.171 4.171 23 C 0.043 3.957 24 H 0.087 0.913 25 O -0.394 6.394 26 C -0.218 4.218 27 C -0.024 4.024 28 O -0.299 6.299 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.242 0.758 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.102 0.898 46 H 0.098 0.902 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.245 0.755 50 H 0.115 0.885 51 H 0.087 0.913 52 H 0.084 0.916 53 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.836 7.154 22.750 25.433 hybrid contribution -0.236 0.275 -1.255 1.307 sum -9.072 7.430 21.494 24.485 Atomic orbital electron populations 1.21642 0.96991 0.98629 1.00255 1.18344 0.93320 0.92981 0.90106 1.21658 0.97901 0.97870 1.00257 1.21263 1.31722 1.12164 0.91558 0.93818 1.25428 0.95143 0.95585 1.00869 1.69895 1.36983 1.23232 1.23614 0.85769 0.78631 0.78517 0.79940 1.20473 1.20751 1.20216 1.21136 0.96673 0.94625 0.83338 1.45388 1.55883 1.33270 1.03923 1.16123 0.80638 0.81968 0.81352 1.90836 1.41153 1.33910 1.86367 1.47275 1.52763 1.30976 1.05165 1.21370 0.97239 0.99411 0.80716 1.21905 0.95516 0.95538 1.02221 1.21253 0.90460 0.88575 0.90408 1.22582 0.97315 1.04026 0.95779 1.21688 0.90824 0.87168 1.01175 1.22101 0.95287 0.97873 1.01880 1.21887 0.84430 0.94813 0.94607 0.91311 1.86489 1.34407 1.41323 1.77157 1.22887 0.97540 1.00522 1.00869 1.22741 0.93533 0.85534 1.00573 1.87999 1.44991 1.19996 1.76952 0.94681 0.91762 0.96355 0.96418 0.91694 0.94739 0.92994 0.94871 0.94704 0.75791 0.90531 0.90948 0.88626 0.90357 0.90472 0.87966 0.89815 0.90211 0.91013 0.90595 0.75471 0.88509 0.91331 0.91559 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 2 C 0.05 2.48 0.50 -52.93 -0.03 2.45 16 3 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 4 C -0.53 -28.15 8.01 25.60 0.21 -27.94 16 5 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 6 C 0.03 1.56 5.15 84.66 0.44 1.99 16 7 N -0.90 -47.58 9.35 21.45 0.20 -47.37 16 8 Si 0.94 42.68 29.54 68.60 2.03 44.70 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 12 C 0.17 7.36 4.51 86.38 0.39 7.75 16 13 N -0.73 -26.53 4.87 -478.53 -2.33 -28.86 16 14 C 0.70 25.79 8.30 179.06 1.49 27.27 16 15 O -0.64 -29.12 15.79 -3.99 -0.06 -29.19 16 16 N -0.62 -17.10 2.97 -836.92 -2.49 -19.59 16 17 C 0.14 3.29 6.18 86.36 0.53 3.82 16 18 C -0.11 -2.12 5.11 30.67 0.16 -1.96 16 19 C 0.13 2.13 0.68 -10.75 -0.01 2.12 16 20 C -0.16 -2.50 4.20 30.66 0.13 -2.37 16 21 C 0.11 2.28 6.20 86.36 0.54 2.82 16 22 C -0.13 -2.03 4.56 30.68 0.14 -1.89 16 23 C 0.10 1.22 3.25 30.71 0.10 1.32 16 24 H 0.07 0.71 6.60 -2.39 -0.02 0.69 16 25 O -0.59 -7.92 13.33 -148.98 -1.99 -9.91 16 26 C -0.18 -1.70 5.77 30.69 0.18 -1.52 16 27 C 0.05 0.56 6.52 72.01 0.47 1.03 16 28 O -0.38 -6.22 9.00 -148.98 -1.34 -7.56 16 29 H 0.03 1.28 6.86 -2.39 -0.02 1.27 16 30 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 34 H 0.03 1.28 6.86 -2.38 -0.02 1.27 16 35 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 36 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.40 12.75 3.62 -92.71 -0.34 12.42 16 39 H 0.08 1.76 7.82 -2.39 -0.02 1.74 16 40 H 0.07 2.07 7.04 -2.38 -0.02 2.06 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.10 1.15 4.99 -2.39 -0.01 1.14 16 45 H 0.08 1.50 7.82 -2.39 -0.02 1.48 16 46 H 0.08 1.61 5.56 -2.39 -0.01 1.59 16 47 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.40 1.89 9.09 -74.06 -0.67 1.22 16 50 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 51 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.07 0.58 6.38 -2.38 -0.02 0.57 16 53 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -67.09 389.79 -0.18 -67.27 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -0.09 Total: 24.94 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 5.89 Total: 5.56 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -4.62 Total: -95.82 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -3.39 Total: -46.65 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -67.09 -0.18 -67.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650034256.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.041 kcal (2) G-P(sol) polarization free energy of solvation -67.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds