Wall clock time and date at job start Sat Apr 11 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47017 * 2 1 4 4 C 1.50695 * 109.46876 * 240.00002 * 2 1 3 5 5 O 1.21284 * 120.00240 * 119.33168 * 4 2 1 6 6 N 1.34784 * 120.00225 * 299.32691 * 4 2 1 7 7 C 1.47154 * 120.97606 * 4.79066 * 6 4 2 8 8 C 1.52883 * 108.60228 * 230.49615 * 7 6 4 9 9 O 1.42959 * 109.30108 * 307.94118 * 8 7 6 10 10 C 1.42956 * 114.16914 * 62.44506 * 9 8 7 11 11 H 1.09002 * 109.55251 * 57.37362 * 10 9 8 12 12 C 1.52997 * 109.51320 * 177.49389 * 10 9 8 13 13 N 1.46500 * 109.47716 * 299.75303 * 12 10 9 14 14 C 1.36931 * 120.00658 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99571 * 359.97438 * 14 13 12 16 16 C 1.38805 * 120.00430 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99982 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00213 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46964 * 90.00107 * 18 16 14 20 20 H 1.48503 * 109.47103 * 210.00094 * 18 16 14 21 21 H 1.48496 * 109.46961 * 330.00258 * 18 16 14 22 22 C 1.47150 * 120.98397 * 185.07171 * 6 4 2 23 23 C 1.53001 * 109.47068 * 119.99898 * 2 1 3 24 24 H 1.09002 * 109.47697 * 66.70274 * 23 2 1 25 25 C 1.53087 * 109.47908 * 306.67673 * 23 2 1 26 26 C 1.53182 * 109.16308 * 182.40737 * 25 23 2 27 27 C 1.53183 * 109.03415 * 56.97979 * 26 25 23 28 28 C 1.53088 * 109.16545 * 303.02233 * 27 26 25 29 29 O 1.42904 * 109.47906 * 186.73393 * 23 2 1 30 30 H 1.09004 * 109.47342 * 53.79235 * 1 2 3 31 31 H 1.09005 * 109.47006 * 293.79388 * 1 2 3 32 32 H 1.08999 * 109.47277 * 173.79667 * 1 2 3 33 33 H 1.08996 * 109.47434 * 64.67120 * 3 2 1 34 34 H 1.08998 * 109.47063 * 184.67408 * 3 2 1 35 35 H 1.09001 * 109.47230 * 304.67166 * 3 2 1 36 36 H 1.08997 * 109.68137 * 350.27840 * 7 6 4 37 37 H 1.09000 * 109.67935 * 110.83593 * 7 6 4 38 38 H 1.08998 * 109.57787 * 187.92159 * 8 7 6 39 39 H 1.09010 * 109.40574 * 67.84665 * 8 7 6 40 40 H 1.09002 * 109.47085 * 59.74852 * 12 10 9 41 41 H 1.08996 * 109.47193 * 179.74671 * 12 10 9 42 42 H 0.97007 * 119.99625 * 359.97438 * 13 12 10 43 43 H 0.97000 * 120.00752 * 179.97438 * 17 16 14 44 44 H 1.09004 * 109.67558 * 249.16881 * 22 6 4 45 45 H 1.09004 * 109.68079 * 9.71401 * 22 6 4 46 46 H 1.08994 * 109.52977 * 302.31557 * 25 23 2 47 47 H 1.09001 * 109.52369 * 62.44334 * 25 23 2 48 48 H 1.08992 * 109.54860 * 176.84742 * 26 25 23 49 49 H 1.09004 * 109.54561 * 297.02825 * 26 25 23 50 50 H 1.09007 * 109.51970 * 62.92552 * 27 26 25 51 51 H 1.08997 * 109.52056 * 183.05056 * 27 26 25 52 52 H 1.08996 * 109.48087 * 177.58804 * 28 27 26 53 53 H 1.09001 * 109.48000 * 297.61348 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7195 -0.1175 -2.0349 6 7 1.7179 -2.0047 -1.4369 7 6 0.8014 -2.7153 -0.5311 8 6 1.4588 -4.0276 -0.1032 9 8 1.8857 -4.7430 -1.2650 10 6 2.8749 -4.0625 -2.0408 11 1 3.7424 -3.8462 -1.4173 12 6 3.2982 -4.9449 -3.2168 13 7 3.8611 -6.1985 -2.7090 14 6 4.3105 -7.1513 -3.5838 15 1 4.2497 -6.9788 -4.6482 16 6 4.8443 -8.3389 -3.1026 17 7 4.9180 -8.5493 -1.8054 18 14 5.4568 -9.6389 -4.2960 19 1 6.8928 -9.4024 -4.5913 20 1 5.2912 -10.9845 -3.6900 21 1 4.6735 -9.5632 -5.5552 22 6 2.2857 -2.7505 -2.5712 23 6 2.0400 -0.7212 1.2493 24 1 1.7780 -1.7777 1.1914 25 6 1.3974 -0.1031 2.4937 26 6 1.9581 -0.7898 3.7429 27 6 3.4837 -0.6516 3.7468 28 6 4.0457 -1.2485 2.4539 29 8 3.4603 -0.5861 1.3311 30 1 -0.3634 0.6071 -0.8292 31 1 -0.3633 0.4146 0.9404 32 1 -0.3634 -1.0216 -0.1110 33 1 1.7466 1.9316 0.9288 34 1 3.1267 1.4436 -0.0837 35 1 1.6099 1.9799 -0.8452 36 1 0.6043 -2.1012 0.3475 37 1 -0.1341 -2.9282 -1.0483 38 1 0.7415 -4.6311 0.4530 39 1 2.3205 -3.8119 0.5286 40 1 2.4299 -5.1623 -3.8389 41 1 4.0491 -4.4236 -3.8104 42 1 3.9154 -6.3537 -1.7530 43 1 5.2907 -9.3793 -1.4690 44 1 1.5021 -2.9669 -3.2973 45 1 3.0709 -2.1596 -3.0430 46 1 1.6252 0.9621 2.5304 47 1 0.3172 -0.2434 2.4537 48 1 1.5469 -0.3169 4.6346 49 1 1.6864 -1.8454 3.7317 50 1 3.7537 0.4027 3.8087 51 1 3.8954 -1.1841 4.6041 52 1 5.1271 -1.1144 2.4318 53 1 3.8102 -2.3119 2.4121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673274289.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:48 Heat of formation + Delta-G solvation = -122.818083 kcal Electronic energy + Delta-G solvation = -32585.743543 eV Core-core repulsion = 28457.455493 eV Total energy + Delta-G solvation = -4128.288050 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.28978 -40.38573 -39.49557 -36.90613 -36.41089 -35.66637 -34.55129 -33.91942 -31.95087 -30.90102 -29.45479 -28.46528 -27.42419 -26.05905 -25.32948 -24.83623 -24.15655 -22.88415 -21.88134 -20.88610 -20.03384 -19.23103 -18.33000 -17.81372 -17.41247 -17.09218 -17.05486 -16.73734 -16.31334 -16.00535 -15.82455 -15.65844 -15.36281 -15.31803 -15.04762 -14.88301 -14.48213 -14.27735 -14.14672 -13.88737 -13.70420 -13.52749 -13.35111 -13.08866 -13.04332 -12.87283 -12.80814 -12.70072 -12.55884 -12.30424 -12.15549 -12.07344 -11.99796 -11.91704 -11.79720 -11.64603 -11.43750 -11.29648 -10.98933 -10.93137 -10.81628 -10.22238 -9.65689 -9.02415 -7.94761 -5.24641 1.46841 1.49390 1.49770 1.58157 1.76939 2.55746 2.68322 2.69848 3.21452 3.38744 3.50941 3.60440 3.80265 3.82215 3.87924 3.92137 3.97198 4.00928 4.05467 4.09335 4.11148 4.14456 4.21804 4.31669 4.37564 4.45621 4.52568 4.61393 4.62849 4.67850 4.73061 4.75283 4.79879 4.85328 4.89581 4.93133 4.95839 4.99332 5.04739 5.08402 5.12981 5.20301 5.22507 5.27855 5.36890 5.46143 5.47242 6.17805 6.21828 6.26389 6.30399 7.03757 7.32605 8.05517 8.31399 9.28929 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.002911 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.797110 B = 9616.736408 C =10418.844453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.069 4.069 3 C -0.117 4.117 4 C 0.524 3.476 5 O -0.580 6.580 6 N -0.612 5.612 7 C 0.055 3.945 8 C 0.036 3.964 9 O -0.383 6.383 10 C 0.091 3.909 11 H 0.042 0.958 12 C 0.161 3.839 13 N -0.739 5.739 14 C -0.249 4.249 15 H 0.077 0.923 16 C -0.075 4.075 17 N -0.969 5.969 18 Si 0.978 3.022 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.269 1.269 22 C 0.095 3.905 23 C 0.084 3.916 24 H 0.073 0.927 25 C -0.148 4.148 26 C -0.123 4.123 27 C -0.151 4.151 28 C 0.053 3.947 29 O -0.399 6.399 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.039 0.961 35 H 0.054 0.946 36 H 0.139 0.861 37 H 0.099 0.901 38 H 0.132 0.868 39 H 0.044 0.956 40 H 0.032 0.968 41 H 0.040 0.960 42 H 0.375 0.625 43 H 0.252 0.748 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.107 0.893 48 H 0.087 0.913 49 H 0.068 0.932 50 H 0.069 0.931 51 H 0.084 0.916 52 H 0.088 0.912 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.129 21.296 14.303 29.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.072 4.072 3 C -0.174 4.174 4 C 0.314 3.686 5 O -0.459 6.459 6 N -0.345 5.345 7 C -0.067 4.067 8 C -0.041 4.041 9 O -0.301 6.301 10 C 0.032 3.968 11 H 0.060 0.940 12 C 0.034 3.966 13 N -0.382 5.382 14 C -0.381 4.381 15 H 0.095 0.905 16 C -0.267 4.267 17 N -0.619 5.619 18 Si 0.806 3.194 19 H -0.213 1.213 20 H -0.220 1.220 21 H -0.193 1.193 22 C -0.029 4.029 23 C 0.027 3.973 24 H 0.090 0.910 25 C -0.186 4.186 26 C -0.160 4.160 27 C -0.189 4.189 28 C -0.024 4.024 29 O -0.319 6.319 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.156 0.844 37 H 0.117 0.883 38 H 0.150 0.850 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.207 0.793 43 H 0.060 0.940 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.125 0.875 48 H 0.105 0.895 49 H 0.087 0.913 50 H 0.088 0.912 51 H 0.102 0.898 52 H 0.107 0.893 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.718 21.479 13.510 28.845 hybrid contribution 1.086 -0.979 -0.248 1.483 sum -12.631 20.500 13.262 27.490 Atomic orbital electron populations 1.22413 0.88936 1.04820 1.05473 1.20871 0.99055 0.96963 0.90314 1.21557 1.00787 0.92470 1.02627 1.21212 0.78745 0.81056 0.87603 1.90650 1.40423 1.66408 1.48403 1.48159 1.47097 1.10557 1.28654 1.23224 0.93299 0.94100 0.96031 1.23201 0.99619 0.93673 0.87623 1.88102 1.58168 1.45257 1.38596 1.22401 0.90022 0.91368 0.93011 0.94008 1.20752 0.95926 0.86474 0.93464 1.42382 1.73892 1.15929 1.05982 1.19665 1.31959 0.96193 0.90284 0.90482 1.25613 1.02930 1.00553 0.97632 1.69838 1.52679 1.26530 1.12859 0.85084 0.78064 0.78094 0.78157 1.21345 1.21958 1.19333 1.22049 0.99848 0.91686 0.89289 1.22566 0.81666 0.99008 0.94089 0.90963 1.22368 1.02028 1.01293 0.92866 1.21635 0.94452 1.01507 0.98424 1.22150 0.97232 1.02128 0.97377 1.22696 0.98252 0.95507 0.85932 1.87983 1.20739 1.75649 1.47533 0.91289 0.87493 0.89659 0.89284 0.94170 0.92701 0.84415 0.88268 0.84986 0.93762 0.94969 0.94275 0.79273 0.93962 0.89384 0.89645 0.90251 0.87520 0.89490 0.91290 0.91203 0.89789 0.89332 0.93662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 7.77 71.98 0.56 -1.14 16 2 C -0.07 -1.29 0.36 -52.93 -0.02 -1.31 16 3 C -0.12 -2.32 7.39 71.98 0.53 -1.78 16 4 C 0.52 14.69 6.30 87.65 0.55 15.24 16 5 O -0.58 -21.43 15.43 -3.04 -0.05 -21.48 16 6 N -0.61 -15.95 3.02 -818.14 -2.47 -18.42 16 7 C 0.05 1.01 4.12 86.22 0.35 1.36 16 8 C 0.04 0.85 6.75 71.94 0.49 1.34 16 9 O -0.38 -13.52 10.14 -148.98 -1.51 -15.03 16 10 C 0.09 3.31 2.86 30.69 0.09 3.40 16 11 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 12 C 0.16 6.95 5.95 86.38 0.51 7.46 16 13 N -0.74 -40.14 5.50 -343.47 -1.89 -42.03 16 14 C -0.25 -14.56 9.99 84.03 0.84 -13.72 16 15 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 16 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 17 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 18 Si 0.98 47.28 29.55 68.60 2.03 49.31 16 19 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 20 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 C 0.10 2.93 5.91 86.35 0.51 3.44 16 23 C 0.08 1.42 1.56 30.62 0.05 1.47 16 24 H 0.07 1.19 4.27 -2.39 -0.01 1.18 16 25 C -0.15 -1.46 4.63 30.68 0.14 -1.31 16 26 C -0.12 -1.17 6.03 30.72 0.19 -0.99 16 27 C -0.15 -1.95 6.14 30.68 0.19 -1.76 16 28 C 0.05 1.01 6.84 72.01 0.49 1.50 16 29 O -0.40 -9.49 9.35 -148.98 -1.39 -10.88 16 30 H 0.07 0.80 8.14 -2.38 -0.02 0.79 16 31 H 0.11 0.52 6.02 -2.38 -0.01 0.50 16 32 H 0.08 0.75 4.61 -2.39 -0.01 0.74 16 33 H 0.09 1.22 6.38 -2.39 -0.02 1.20 16 34 H 0.04 1.05 7.52 -2.39 -0.02 1.04 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.14 1.69 2.78 -2.39 -0.01 1.69 16 37 H 0.10 1.53 8.10 -2.39 -0.02 1.51 16 38 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.04 1.11 7.71 -2.38 -0.02 1.09 16 40 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.38 21.85 7.55 -92.70 -0.70 21.15 16 43 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 44 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.09 2.90 7.12 -2.38 -0.02 2.88 16 46 H 0.08 0.80 6.44 -2.39 -0.02 0.78 16 47 H 0.11 0.48 6.35 -2.39 -0.02 0.46 16 48 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 50 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 51 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 52 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 53 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -79.22 392.31 1.15 -78.07 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.21 Total: 31.97 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 5.94 Total: 9.22 kcal Atomic # 7 Polarization: -117.10 SS G_CDS: -4.08 Total: -121.17 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -2.95 Total: -47.39 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -79.22 1.15 -78.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673274289.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.750 kcal (2) G-P(sol) polarization free energy of solvation -79.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds