Wall clock time and date at job start Sat Apr 11 2020 06:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47293 * 2 1 4 4 C 1.50695 * 109.47197 * 239.99255 * 2 1 3 5 5 O 1.21284 * 120.00612 * 240.00131 * 4 2 1 6 6 N 1.34781 * 119.99919 * 60.00696 * 4 2 1 7 7 C 1.46497 * 120.00241 * 179.97438 * 6 4 2 8 8 C 1.52993 * 109.47291 * 185.63222 * 7 6 4 9 9 H 1.09004 * 109.68080 * 303.65664 * 8 7 6 10 10 C 1.53293 * 109.68523 * 183.10235 * 8 7 6 11 11 O 1.42962 * 109.22671 * 187.97590 * 10 8 7 12 12 C 1.42959 * 114.16840 * 62.57755 * 11 10 8 13 13 C 1.53296 * 109.22599 * 297.42571 * 12 11 10 14 14 N 1.47153 * 108.38225 * 52.29775 * 13 12 11 15 15 C 1.36933 * 120.98002 * 129.49283 * 14 13 12 16 16 H 1.08005 * 120.00351 * 142.44111 * 15 14 13 17 17 C 1.38813 * 120.00288 * 322.44002 * 15 14 13 18 18 N 1.31618 * 119.99347 * 345.84252 * 17 15 14 19 19 Si 1.86797 * 120.00389 * 165.84215 * 17 15 14 20 20 H 1.48502 * 109.47115 * 59.99957 * 19 17 15 21 21 H 1.48501 * 109.47249 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47253 * 299.99846 * 19 17 15 23 23 C 1.53005 * 109.47190 * 119.99773 * 2 1 3 24 24 H 1.08998 * 109.48224 * 59.97285 * 23 2 1 25 25 C 1.53097 * 109.47921 * 299.94252 * 23 2 1 26 26 C 1.53174 * 109.16541 * 182.40631 * 25 23 2 27 27 C 1.53175 * 109.03513 * 56.97891 * 26 25 23 28 28 C 1.53096 * 109.16798 * 303.02286 * 27 26 25 29 29 O 1.42899 * 109.48181 * 180.02562 * 23 2 1 30 30 H 1.09000 * 109.47274 * 300.00548 * 1 2 3 31 31 H 1.09001 * 109.46824 * 60.00318 * 1 2 3 32 32 H 1.08994 * 109.46911 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47185 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46927 * 299.99619 * 3 2 1 35 35 H 1.09000 * 109.47408 * 59.99534 * 3 2 1 36 36 H 0.96997 * 119.99388 * 359.97438 * 6 4 2 37 37 H 1.08998 * 109.46955 * 305.63679 * 7 6 4 38 38 H 1.08998 * 109.47481 * 65.63083 * 7 6 4 39 39 H 1.08997 * 109.51377 * 307.90394 * 10 8 7 40 40 H 1.09001 * 109.51422 * 68.05191 * 10 8 7 41 41 H 1.09000 * 109.51464 * 177.49568 * 12 11 10 42 42 H 1.09004 * 109.54863 * 57.37053 * 12 11 10 43 43 H 1.08998 * 109.67939 * 292.57963 * 13 12 11 44 44 H 1.08996 * 109.71250 * 172.03795 * 13 12 11 45 45 H 0.97003 * 120.00044 * 180.02562 * 18 17 15 46 46 H 1.09000 * 109.52142 * 302.31682 * 25 23 2 47 47 H 1.09001 * 109.52130 * 62.49772 * 25 23 2 48 48 H 1.09002 * 109.54623 * 297.11479 * 26 25 23 49 49 H 1.08994 * 109.54705 * 176.84753 * 26 25 23 50 50 H 1.09003 * 109.52392 * 183.11159 * 27 26 25 51 51 H 1.08999 * 109.52214 * 62.92779 * 27 26 25 52 52 H 1.08991 * 109.48520 * 177.59299 * 28 27 26 53 53 H 1.09003 * 109.47184 * 297.62865 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2303 5 8 2.7296 -1.6966 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 6 2.1956 -0.9405 -3.6506 8 6 1.8045 -0.1423 -4.8958 9 1 0.7244 0.0033 -4.9143 10 6 2.2457 -0.8989 -6.1539 11 8 2.0457 -0.0661 -7.2985 12 6 2.8222 1.1342 -7.2919 13 6 2.4105 1.9951 -6.0921 14 7 2.4806 1.1647 -4.8793 15 6 3.1546 1.5956 -3.7680 16 1 2.7655 1.3815 -2.7835 17 6 4.3381 2.3077 -3.9066 18 7 4.9592 2.3323 -5.0668 19 14 5.0493 3.2308 -2.4467 20 1 5.3328 2.2744 -1.3467 21 1 6.3087 3.9048 -2.8530 22 1 4.0721 4.2468 -1.9798 23 6 2.0400 -0.7212 1.2493 24 1 1.6764 -1.7488 1.2498 25 6 1.5310 0.0012 2.4994 26 6 2.0946 -0.6905 3.7445 27 6 3.6240 -0.7006 3.6612 28 6 4.0523 -1.3959 2.3662 29 8 3.4690 -0.7208 1.2498 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.1490 0.5383 -2.5435 37 1 3.2809 -1.0284 -3.6014 38 1 1.7526 -1.9350 -3.7027 39 1 3.3014 -1.1575 -6.0718 40 1 1.6544 -1.8086 -6.2578 41 1 2.6456 1.6872 -8.2145 42 1 3.8802 0.8838 -7.2144 43 1 1.3915 2.3558 -6.2316 44 1 3.0900 2.8420 -5.9969 45 1 5.7864 2.8295 -5.1637 46 1 1.8604 1.0401 2.4793 47 1 0.4419 -0.0360 2.5236 48 1 1.7252 -1.7150 3.7912 49 1 1.7816 -0.1477 4.6363 50 1 4.0318 -1.2398 4.5162 51 1 3.9958 0.3240 3.6645 52 1 5.1385 -1.3683 2.2808 53 1 3.7149 -2.4323 2.3815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700120398.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:16 Heat of formation + Delta-G solvation = -127.531431 kcal Electronic energy + Delta-G solvation = -33038.375117 eV Core-core repulsion = 28909.882681 eV Total energy + Delta-G solvation = -4128.492436 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.58926 -40.26684 -39.54091 -36.87659 -36.33449 -35.26245 -34.46161 -33.19006 -32.11323 -30.76515 -29.01118 -28.30431 -27.07306 -25.92478 -25.18472 -25.14253 -23.63724 -22.74422 -21.40320 -21.08921 -20.12045 -18.78011 -17.67202 -17.46383 -17.21851 -17.10980 -16.85605 -16.39289 -16.27846 -16.11087 -15.59828 -15.49042 -15.37568 -15.32029 -15.16519 -14.73209 -14.59168 -14.20865 -13.80379 -13.75026 -13.46715 -13.29672 -13.16842 -13.08356 -13.00488 -12.95845 -12.69920 -12.55641 -12.41087 -12.26198 -12.08502 -11.99240 -11.94488 -11.86285 -11.76690 -11.43802 -11.20436 -11.14114 -10.90877 -10.58490 -10.32981 -10.20029 -9.71986 -8.45183 -7.85596 -5.40400 1.40203 1.45036 1.47458 1.82367 2.35225 2.48100 2.86489 3.06049 3.31238 3.47401 3.63874 3.68274 3.94272 3.98539 4.05882 4.08783 4.10908 4.17085 4.25328 4.32271 4.34816 4.37943 4.57213 4.60419 4.62979 4.66853 4.69371 4.74065 4.75707 4.77607 4.82502 4.86954 4.93909 4.97053 4.99061 5.03231 5.08372 5.11281 5.16863 5.19680 5.29837 5.34979 5.42741 5.46014 5.46949 5.63335 5.79936 6.35831 6.44401 6.46771 6.73666 7.16139 7.43818 7.79204 8.39180 9.18004 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014416 B = 0.003981 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.774547 B = 7031.231730 C = 8034.916577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 C -0.138 4.138 4 C 0.514 3.486 5 O -0.581 6.581 6 N -0.698 5.698 7 C 0.148 3.852 8 C 0.127 3.873 9 H 0.062 0.938 10 C 0.055 3.945 11 O -0.398 6.398 12 C 0.059 3.941 13 C 0.131 3.869 14 N -0.601 5.601 15 C -0.251 4.251 16 H 0.092 0.908 17 C -0.038 4.038 18 N -0.922 5.922 19 Si 0.937 3.063 20 H -0.290 1.290 21 H -0.301 1.301 22 H -0.266 1.266 23 C 0.115 3.885 24 H 0.049 0.951 25 C -0.150 4.150 26 C -0.119 4.119 27 C -0.151 4.151 28 C 0.054 3.946 29 O -0.397 6.397 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.409 0.591 37 H 0.032 0.968 38 H 0.075 0.925 39 H 0.025 0.975 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.029 0.971 43 H 0.023 0.977 44 H 0.070 0.930 45 H 0.245 0.755 46 H 0.074 0.926 47 H 0.101 0.899 48 H 0.067 0.933 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.063 0.937 52 H 0.083 0.917 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.753 -3.922 13.939 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.073 4.073 3 C -0.195 4.195 4 C 0.302 3.698 5 O -0.461 6.461 6 N -0.349 5.349 7 C 0.023 3.977 8 C 0.021 3.979 9 H 0.079 0.921 10 C -0.024 4.024 11 O -0.316 6.316 12 C -0.019 4.019 13 C 0.006 3.994 14 N -0.326 5.326 15 C -0.382 4.382 16 H 0.110 0.890 17 C -0.235 4.235 18 N -0.567 5.567 19 Si 0.767 3.233 20 H -0.217 1.217 21 H -0.228 1.228 22 H -0.191 1.191 23 C 0.057 3.943 24 H 0.067 0.933 25 C -0.187 4.187 26 C -0.156 4.156 27 C -0.189 4.189 28 C -0.023 4.023 29 O -0.316 6.316 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.246 0.754 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.044 0.956 40 H 0.134 0.866 41 H 0.116 0.884 42 H 0.048 0.952 43 H 0.041 0.959 44 H 0.089 0.911 45 H 0.054 0.946 46 H 0.093 0.907 47 H 0.119 0.881 48 H 0.086 0.914 49 H 0.106 0.894 50 H 0.108 0.892 51 H 0.082 0.918 52 H 0.101 0.899 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.135 -4.493 13.667 18.192 hybrid contribution 1.479 0.766 0.457 1.728 sum -9.656 -3.727 14.124 17.510 Atomic orbital electron populations 1.21926 0.88892 1.03528 1.04957 1.20883 0.99012 0.96304 0.91107 1.21869 1.00471 0.93400 1.03752 1.20955 0.79514 0.84069 0.85311 1.90630 1.39276 1.28859 1.87296 1.45935 1.52503 1.31579 1.04927 1.20986 0.98135 0.94694 0.83889 1.21661 0.96526 0.86716 0.92989 0.92078 1.22966 0.99685 0.93495 0.86234 1.87755 1.67188 1.34079 1.42600 1.22867 0.93829 0.85841 0.99321 1.21373 0.97190 0.95005 0.85844 1.44365 1.61312 1.14241 1.12722 1.19808 1.00601 1.29920 0.87822 0.89045 1.25843 0.96529 1.03211 0.97874 1.70071 1.17303 1.44448 1.24860 0.85818 0.77745 0.79198 0.80571 1.21714 1.22799 1.19081 1.21851 0.81125 0.97693 0.93618 0.93338 1.22362 1.02470 1.00419 0.93434 1.21599 0.94452 1.01427 0.98149 1.22173 0.97498 1.01611 0.97598 1.22645 0.98227 0.95201 0.86197 1.88023 1.20199 1.77246 1.46169 0.88262 0.90696 0.91599 0.94995 0.91830 0.88609 0.75373 0.94935 0.90662 0.95632 0.86607 0.88376 0.95209 0.95911 0.91149 0.94557 0.90698 0.88097 0.91423 0.89428 0.89233 0.91779 0.89862 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.02 71.98 0.58 -1.95 16 2 C -0.07 -1.94 0.48 -52.93 -0.03 -1.97 16 3 C -0.14 -4.00 7.81 71.98 0.56 -3.43 16 4 C 0.51 19.02 6.32 87.65 0.55 19.58 16 5 O -0.58 -26.29 15.28 14.40 0.22 -26.07 16 6 N -0.70 -24.88 3.12 -463.08 -1.45 -26.32 16 7 C 0.15 5.69 4.57 86.38 0.39 6.08 16 8 C 0.13 4.90 3.16 44.96 0.14 5.05 16 9 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 10 C 0.06 2.06 6.29 72.08 0.45 2.52 16 11 O -0.40 -15.96 10.74 -148.98 -1.60 -17.56 16 12 C 0.06 2.49 6.98 72.08 0.50 2.99 16 13 C 0.13 5.95 5.95 86.35 0.51 6.46 16 14 N -0.60 -27.78 2.98 -673.74 -2.01 -29.79 16 15 C -0.25 -12.68 7.97 84.03 0.67 -12.01 16 16 H 0.09 4.38 4.25 -2.91 -0.01 4.37 16 17 C -0.04 -2.05 5.00 84.86 0.42 -1.63 16 18 N -0.92 -52.61 11.42 21.65 0.25 -52.37 16 19 Si 0.94 45.16 29.58 68.60 2.03 47.19 16 20 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 21 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 C 0.12 3.13 1.45 30.63 0.04 3.17 16 24 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 25 C -0.15 -2.76 4.70 30.68 0.14 -2.61 16 26 C -0.12 -1.90 6.03 30.71 0.19 -1.72 16 27 C -0.15 -2.88 6.14 30.69 0.19 -2.69 16 28 C 0.05 1.43 6.84 72.01 0.49 1.92 16 29 O -0.40 -13.66 8.63 -131.54 -1.14 -14.79 16 30 H 0.10 1.27 6.49 -2.39 -0.02 1.26 16 31 H 0.07 1.31 7.56 -2.39 -0.02 1.30 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.03 1.17 7.68 -2.39 -0.02 1.15 16 34 H 0.06 1.86 7.04 -2.39 -0.02 1.84 16 35 H 0.10 2.11 6.38 -2.39 -0.02 2.09 16 36 H 0.41 13.38 6.35 -92.71 -0.59 12.79 16 37 H 0.03 1.55 7.85 -2.39 -0.02 1.54 16 38 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 41 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 42 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 3.61 5.94 -2.39 -0.01 3.60 16 45 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 46 H 0.07 1.43 6.31 -2.39 -0.02 1.41 16 47 H 0.10 1.33 6.57 -2.39 -0.02 1.31 16 48 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 52 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 53 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -70.27 393.60 2.44 -67.83 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.31 Total: 32.12 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: 5.82 Total: 19.77 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -3.21 Total: -108.48 kcal Atomic # 8 Polarization: -55.90 SS G_CDS: -2.52 Total: -58.42 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -70.27 2.44 -67.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700120398.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.702 kcal (2) G-P(sol) polarization free energy of solvation -70.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds