Wall clock time and date at job start Sat Apr 11 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00185 * 2 1 4 4 C 1.52995 * 109.46963 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47704 * 60.00060 * 4 3 2 6 6 C 1.53003 * 109.47342 * 299.99898 * 4 3 2 7 7 C 1.52998 * 109.47221 * 179.97438 * 4 3 2 8 8 C 1.50702 * 109.47306 * 179.97438 * 7 4 3 9 9 O 1.21283 * 120.00096 * 0.02562 * 8 7 4 10 10 N 1.34777 * 119.99877 * 179.97438 * 8 7 4 11 11 C 1.46503 * 119.99756 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47018 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.82101 * 59.43669 * 12 11 10 14 14 C 1.54468 * 109.83023 * 180.42332 * 12 11 10 15 15 C 1.55511 * 102.38641 * 140.87803 * 14 12 11 16 16 C 1.53881 * 100.75645 * 327.02646 * 15 14 12 17 17 C 1.52378 * 115.68080 * 263.23256 * 16 15 14 18 18 N 1.47280 * 87.70337 * 218.74937 * 17 16 15 19 19 C 1.36927 * 135.93628 * 206.18043 * 18 17 16 20 20 H 1.08006 * 120.00208 * 6.47422 * 19 18 17 21 21 C 1.38815 * 120.00352 * 186.47863 * 19 18 17 22 22 N 1.31618 * 119.99817 * 6.41305 * 21 19 18 23 23 Si 1.86799 * 120.00085 * 186.41286 * 21 19 18 24 24 H 1.48504 * 109.47051 * 265.01587 * 23 21 19 25 25 H 1.48494 * 109.47274 * 25.01873 * 23 21 19 26 26 H 1.48503 * 109.46714 * 145.02204 * 23 21 19 27 27 C 1.47278 * 88.12529 * 26.43517 * 18 17 16 28 28 O 1.42408 * 106.66965 * 34.98141 * 16 15 14 29 29 H 1.08996 * 109.47807 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47093 * 300.00215 * 1 2 3 31 31 H 1.09002 * 109.47009 * 59.99632 * 1 2 3 32 32 H 1.08999 * 109.47348 * 60.00182 * 3 2 1 33 33 H 1.08999 * 109.47143 * 299.99933 * 3 2 1 34 34 H 1.08991 * 109.47776 * 180.02562 * 5 4 3 35 35 H 1.09009 * 109.46655 * 300.00364 * 5 4 3 36 36 H 1.09004 * 109.46866 * 59.99172 * 5 4 3 37 37 H 1.09005 * 109.47006 * 300.00438 * 6 4 3 38 38 H 1.08996 * 109.46665 * 59.99999 * 6 4 3 39 39 H 1.08997 * 109.47828 * 180.02562 * 6 4 3 40 40 H 1.08999 * 109.47151 * 59.99931 * 7 4 3 41 41 H 1.09003 * 109.47503 * 300.00092 * 7 4 3 42 42 H 0.97002 * 120.00481 * 0.02562 * 10 8 7 43 43 H 1.09005 * 109.47330 * 60.00386 * 11 10 8 44 44 H 1.08999 * 109.47094 * 300.00116 * 11 10 8 45 45 H 1.08996 * 110.82519 * 259.10099 * 14 12 11 46 46 H 1.08996 * 110.82549 * 22.45638 * 14 12 11 47 47 H 1.08995 * 111.15898 * 209.15325 * 15 14 12 48 48 H 1.09005 * 111.15591 * 84.90369 * 15 14 12 49 49 H 1.08997 * 113.50955 * 104.04378 * 17 16 15 50 50 H 1.08998 * 113.57370 * 333.46730 * 17 16 15 51 51 H 0.96991 * 120.00313 * 180.02562 * 22 21 19 52 52 H 1.08993 * 113.51275 * 88.27972 * 27 18 17 53 53 H 1.09002 * 113.50938 * 218.85735 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 3.9865 0.4255 -1.2502 6 6 3.9874 0.4250 1.2483 7 6 4.1578 2.5822 -0.0013 8 6 5.6601 2.4631 -0.0013 9 8 6.1817 1.3682 -0.0013 10 7 6.4241 3.5734 -0.0023 11 6 7.8846 3.4577 -0.0029 12 6 8.5070 4.8554 -0.0034 13 1 8.1813 5.4053 0.8796 14 6 10.0475 4.7430 -0.0148 15 6 10.4591 5.8967 -0.9729 16 6 9.2714 5.8949 -1.9514 17 6 9.4850 5.1227 -3.2475 18 7 8.7448 6.1928 -3.9376 19 6 7.9933 6.2918 -5.0779 20 1 7.7547 5.4049 -5.6462 21 6 7.5380 7.5322 -5.5036 22 7 7.9316 8.6254 -4.8854 23 14 6.3665 7.6497 -6.9539 24 1 7.1403 7.9023 -8.1960 25 1 5.6162 6.3754 -7.0887 26 1 5.4120 8.7650 -6.7300 27 6 9.1718 7.1113 -2.8684 28 8 8.1150 5.5626 -1.1896 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 5.0729 0.3390 -1.2504 35 1 3.5430 -0.5703 -1.2502 36 1 3.6644 0.9665 -2.1400 37 1 3.6661 0.9658 2.1385 38 1 3.5440 -0.5707 1.2482 39 1 5.0740 0.3392 1.2481 40 1 3.8366 3.1234 0.8887 41 1 3.8359 3.1230 -0.8913 42 1 6.0070 4.4492 -0.0027 43 1 8.2058 2.9162 -0.8927 44 1 8.2065 2.9173 0.8873 45 1 10.4551 4.9041 0.9832 46 1 10.3627 3.7769 -0.4089 47 1 11.3925 5.6673 -1.4867 48 1 10.5283 6.8450 -0.4398 49 1 8.9762 4.1590 -3.2683 50 1 10.5308 5.0544 -3.5470 51 1 7.6132 9.4920 -5.1825 52 1 10.1320 7.5889 -3.0632 53 1 8.3996 7.8205 -2.5704 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700204804.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:24 Heat of formation + Delta-G solvation = -95.932804 kcal Electronic energy + Delta-G solvation = -30893.917047 eV Core-core repulsion = 26766.794830 eV Total energy + Delta-G solvation = -4127.122217 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54834 -41.03957 -39.17305 -38.14088 -36.49404 -35.41373 -34.16120 -33.10226 -31.14488 -29.52223 -28.32820 -28.12642 -28.05759 -26.55358 -26.30803 -25.22038 -23.20743 -22.47038 -21.50453 -20.50361 -20.03572 -18.71505 -18.09765 -17.71212 -17.30914 -16.93848 -16.76219 -16.73707 -16.41940 -16.25145 -16.03442 -15.59686 -15.31238 -14.88371 -14.83464 -14.64601 -14.52264 -14.23480 -14.12740 -13.73760 -13.54315 -13.22301 -13.17216 -13.00723 -12.82315 -12.70567 -12.66345 -12.54513 -12.50856 -12.27849 -12.21237 -12.13975 -11.92520 -11.68527 -11.64028 -11.59620 -11.32453 -11.23534 -10.92657 -10.55649 -10.45680 -10.23735 -9.96331 -8.94550 -7.94754 -5.25284 1.42553 1.44617 1.54213 1.70469 2.19421 2.45265 2.76188 2.97733 3.28955 3.44018 3.54214 3.68273 3.78462 3.84166 3.87064 3.95809 4.00907 4.18486 4.25558 4.42552 4.45408 4.47676 4.49299 4.58233 4.60717 4.61466 4.64482 4.64926 4.72484 4.81642 4.84585 4.87238 4.91826 4.97326 4.98707 5.01344 5.09407 5.11958 5.13484 5.18076 5.26480 5.28385 5.33538 5.41991 5.48949 5.50087 5.68829 5.89247 6.28133 6.37640 6.61375 6.88690 7.33853 7.56914 8.58728 9.24638 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009614 B = 0.002892 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.729609 B = 9680.760994 C =12015.183952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.071 3.929 4 C -0.042 4.042 5 C -0.145 4.145 6 C -0.140 4.140 7 C -0.131 4.131 8 C 0.511 3.489 9 O -0.566 6.566 10 N -0.719 5.719 11 C 0.118 3.882 12 C 0.061 3.939 13 H 0.106 0.894 14 C -0.133 4.133 15 C -0.129 4.129 16 C 0.082 3.918 17 C 0.103 3.897 18 N -0.637 5.637 19 C -0.230 4.230 20 H 0.077 0.923 21 C -0.065 4.065 22 N -0.952 5.952 23 Si 0.979 3.021 24 H -0.284 1.284 25 H -0.271 1.271 26 H -0.290 1.290 27 C 0.166 3.834 28 O -0.361 6.361 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.043 0.957 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.123 0.877 41 H 0.103 0.897 42 H 0.411 0.589 43 H 0.045 0.955 44 H 0.090 0.910 45 H 0.116 0.884 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.091 0.909 49 H 0.036 0.964 50 H 0.058 0.942 51 H 0.250 0.750 52 H 0.039 0.961 53 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.493 -11.748 17.795 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C -0.005 4.005 4 C -0.043 4.043 5 C -0.202 4.202 6 C -0.197 4.197 7 C -0.170 4.170 8 C 0.299 3.701 9 O -0.446 6.446 10 N -0.371 5.371 11 C -0.006 4.006 12 C 0.003 3.997 13 H 0.123 0.877 14 C -0.171 4.171 15 C -0.168 4.168 16 C 0.041 3.959 17 C -0.023 4.023 18 N -0.363 5.363 19 C -0.358 4.358 20 H 0.095 0.905 21 C -0.258 4.258 22 N -0.601 5.601 23 Si 0.806 3.194 24 H -0.211 1.211 25 H -0.196 1.196 26 H -0.216 1.216 27 C 0.040 3.960 28 O -0.280 6.280 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.141 0.859 41 H 0.121 0.879 42 H 0.246 0.754 43 H 0.063 0.937 44 H 0.109 0.891 45 H 0.134 0.866 46 H 0.103 0.897 47 H 0.115 0.885 48 H 0.110 0.890 49 H 0.055 0.945 50 H 0.075 0.925 51 H 0.059 0.941 52 H 0.056 0.944 53 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.416 -12.498 17.477 22.423 hybrid contribution -0.739 0.942 -1.397 1.840 sum -7.154 -11.557 16.079 21.054 Atomic orbital electron populations 1.22893 0.79862 1.03561 1.00720 1.87849 1.20950 1.28421 1.95541 1.22592 0.92206 0.84610 1.01118 1.20215 0.93027 0.93990 0.97025 1.21948 1.02205 0.99964 0.96090 1.21911 1.02331 0.99805 0.95671 1.21712 0.90363 0.98626 1.06329 1.20936 0.90475 0.83681 0.74998 1.90572 1.75847 1.27267 1.50944 1.45968 1.07035 1.09538 1.74522 1.21736 0.80139 0.96842 1.01917 1.23335 0.96094 0.91377 0.88845 0.87676 1.23084 0.92371 0.99423 1.02188 1.22959 0.97292 1.00285 0.96227 1.22950 0.86056 0.96091 0.90818 1.22947 0.95481 0.92930 0.90907 1.45959 1.56319 1.08695 1.25360 1.19253 1.23378 0.93248 0.99925 0.90524 1.25628 1.03029 0.94760 1.02387 1.70008 1.48513 0.97154 1.44430 0.85066 0.78336 0.77343 0.78615 1.21113 1.19558 1.21591 1.22025 0.96496 0.92606 0.84851 1.88326 1.30145 1.74991 1.34536 0.88887 0.92999 0.93622 0.91509 0.92738 0.92061 0.92943 0.93771 0.92344 0.93180 0.91783 0.85929 0.87865 0.75373 0.93651 0.89147 0.86585 0.89744 0.88496 0.89036 0.94536 0.92459 0.94141 0.94353 0.95394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -8.24 9.35 -148.98 -1.39 -9.63 16 3 C 0.07 1.25 4.81 71.98 0.35 1.60 16 4 C -0.04 -0.88 0.60 -52.18 -0.03 -0.91 16 5 C -0.14 -3.74 8.03 71.98 0.58 -3.16 16 6 C -0.14 -3.08 8.03 71.98 0.58 -2.50 16 7 C -0.13 -2.46 4.77 29.85 0.14 -2.32 16 8 C 0.51 12.85 7.24 87.66 0.63 13.48 16 9 O -0.57 -17.67 11.35 -3.04 -0.03 -17.71 16 10 N -0.72 -17.09 5.47 -463.03 -2.53 -19.62 16 11 C 0.12 2.81 5.23 86.38 0.45 3.26 16 12 C 0.06 1.40 3.62 31.10 0.11 1.52 16 13 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 14 C -0.13 -2.45 6.56 31.96 0.21 -2.24 16 15 C -0.13 -3.13 6.49 31.76 0.21 -2.93 16 16 C 0.08 2.98 1.56 -10.81 -0.02 2.96 16 17 C 0.10 4.32 8.24 83.47 0.69 5.01 16 18 N -0.64 -34.35 3.77 -739.95 -2.79 -37.14 16 19 C -0.23 -13.57 10.73 84.04 0.90 -12.67 16 20 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 21 C -0.06 -3.82 5.50 84.86 0.47 -3.36 16 22 N -0.95 -58.86 11.82 21.65 0.26 -58.60 16 23 Si 0.98 47.00 29.56 68.60 2.03 49.03 16 24 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 25 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 27 C 0.17 8.00 6.79 83.57 0.57 8.57 16 28 O -0.36 -12.68 10.69 -148.98 -1.59 -14.27 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 1.87 5.51 -2.39 -0.01 1.86 16 35 H 0.05 1.37 7.68 -2.38 -0.02 1.35 16 36 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.05 1.16 7.68 -2.39 -0.02 1.14 16 39 H 0.06 1.69 5.51 -2.39 -0.01 1.68 16 40 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.41 8.85 8.40 -92.71 -0.78 8.07 16 43 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.08 1.50 7.85 -2.39 -0.02 1.49 16 47 H 0.10 2.12 7.93 -2.39 -0.02 2.10 16 48 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 49 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.06 2.21 7.99 -2.39 -0.02 2.19 16 51 H 0.25 14.88 8.31 -92.72 -0.77 14.11 16 52 H 0.04 1.85 8.13 -2.39 -0.02 1.83 16 53 H 0.03 1.53 7.62 -2.39 -0.02 1.51 16 Total: -1.00 -77.52 415.10 1.12 -76.40 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.10 Total: 23.65 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 7.08 Total: 7.90 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -5.07 Total: -115.37 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -3.02 Total: -41.61 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -77.52 1.12 -76.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700204804.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.531 kcal (2) G-P(sol) polarization free energy of solvation -77.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds