Wall clock time and date at job start Sat Apr 11 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47272 * 2 1 4 4 C 1.50702 * 109.47430 * 120.00589 * 2 1 3 5 5 O 1.21273 * 120.00580 * 119.99834 * 4 2 1 6 6 N 1.34781 * 119.99415 * 300.27466 * 4 2 1 7 7 C 1.46501 * 119.99507 * 174.58767 * 6 4 2 8 8 C 1.53000 * 112.94514 * 292.97627 * 7 6 4 9 9 C 1.53005 * 109.47220 * 304.43111 * 8 7 6 10 10 O 1.42898 * 109.47490 * 185.04477 * 9 8 7 11 11 C 1.53952 * 113.73970 * 161.24558 * 7 6 4 12 12 N 1.47578 * 86.11440 * 222.04359 * 11 7 6 13 13 C 1.36938 * 134.49039 * 204.63360 * 12 11 7 14 14 H 1.08008 * 119.99828 * 174.58376 * 13 12 11 15 15 C 1.38808 * 120.00068 * 354.59409 * 13 12 11 16 16 N 1.31613 * 120.00049 * 5.00666 * 15 13 12 17 17 Si 1.86806 * 119.99855 * 185.01488 * 15 13 12 18 18 H 1.48502 * 109.47224 * 94.99337 * 17 15 13 19 19 H 1.48504 * 109.47003 * 214.99315 * 17 15 13 20 20 H 1.48500 * 109.46953 * 334.99179 * 17 15 13 21 21 C 1.47581 * 91.01880 * 24.64110 * 12 11 7 22 22 C 1.53009 * 109.46978 * 240.00310 * 2 1 3 23 23 H 1.08993 * 109.47851 * 299.99635 * 22 2 1 24 24 C 1.53088 * 109.47757 * 60.02184 * 22 2 1 25 25 C 1.53177 * 109.16106 * 177.57935 * 24 22 2 26 26 C 1.53181 * 109.04727 * 303.03799 * 25 24 22 27 27 C 1.53097 * 109.16497 * 56.97062 * 26 25 24 28 28 O 1.42903 * 109.41228 * 302.39570 * 27 26 25 29 29 H 1.08998 * 109.47082 * 299.99627 * 1 2 3 30 30 H 1.09002 * 109.47318 * 59.99656 * 1 2 3 31 31 H 1.09004 * 109.47369 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47463 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47357 * 300.00505 * 3 2 1 34 34 H 1.09012 * 109.46784 * 60.00323 * 3 2 1 35 35 H 0.96996 * 120.00125 * 354.58690 * 6 4 2 36 36 H 1.09001 * 109.46873 * 64.42695 * 8 7 6 37 37 H 1.08997 * 109.47274 * 184.43049 * 8 7 6 38 38 H 1.09003 * 109.46781 * 305.04542 * 9 8 7 39 39 H 1.08997 * 109.47311 * 65.03831 * 9 8 7 40 40 H 0.96696 * 114.00387 * 179.97438 * 10 9 8 41 41 H 1.08997 * 113.76848 * 336.34978 * 11 7 6 42 42 H 1.08997 * 113.76759 * 107.74380 * 11 7 6 43 43 H 0.97004 * 119.99781 * 180.02562 * 16 15 13 44 44 H 1.08996 * 113.76889 * 221.05684 * 21 12 11 45 45 H 1.09001 * 113.87076 * 89.66807 * 21 12 11 46 46 H 1.08999 * 109.52558 * 297.49614 * 24 22 2 47 47 H 1.08999 * 109.52555 * 57.68990 * 24 22 2 48 48 H 1.08994 * 109.54931 * 183.16627 * 25 24 22 49 49 H 1.08997 * 109.60730 * 62.94643 * 25 24 22 50 50 H 1.09003 * 109.52285 * 297.06726 * 26 25 24 51 51 H 1.08998 * 109.57991 * 176.90857 * 26 25 24 52 52 H 1.08991 * 109.48352 * 182.41150 * 27 26 25 53 53 H 1.09003 * 109.47282 * 62.37199 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7022 -0.2533 2.4545 7 6 2.0902 -1.0093 3.6479 8 6 1.3719 -2.3555 3.7608 9 6 -0.1410 -2.1317 3.7165 10 8 -0.8130 -3.3730 3.9395 11 6 2.0626 -0.1788 4.9439 12 7 3.3307 -0.8527 5.2840 13 6 3.9835 -1.1352 6.4541 14 1 4.8841 -1.7313 6.4397 15 6 3.4878 -0.6557 7.6587 16 7 2.3391 -0.0140 7.6888 17 14 4.4512 -0.9210 9.2370 18 1 5.2885 0.2740 9.5127 19 1 3.5071 -1.1345 10.3633 20 1 5.3237 -2.1136 9.0898 21 6 3.6127 -1.0998 3.8566 22 6 2.0399 -0.7212 -1.2494 23 1 1.6767 -1.7489 -1.2495 24 6 1.5302 0.0007 -2.4994 25 6 2.0940 -0.6908 -3.7444 26 6 3.6235 -0.7004 -3.6615 27 6 4.0523 -1.3954 -2.3665 28 8 3.4690 -0.7208 -1.2498 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.2077 0.5762 2.5453 36 1 1.6688 -2.9965 2.9307 37 1 1.6411 -2.8331 4.7029 38 1 -0.4258 -1.4200 4.4915 39 1 -0.4215 -1.7370 2.7401 40 1 -1.7775 -3.3062 3.9254 41 1 2.1652 0.8940 4.7804 42 1 1.2381 -0.4318 5.6104 43 1 1.9929 0.3214 8.5306 44 1 4.0259 -2.0881 3.6551 45 1 4.1709 -0.2986 3.3722 46 1 0.4411 -0.0371 -2.5232 47 1 1.8591 1.0397 -2.4796 48 1 1.7807 -0.1483 -4.6363 49 1 1.7251 -1.7153 -3.7925 50 1 3.9950 0.3244 -3.6651 51 1 4.0323 -1.2390 -4.5164 52 1 5.1385 -1.3673 -2.2812 53 1 3.7152 -2.4319 -2.3815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717503864.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:09 Heat of formation + Delta-G solvation = -115.113311 kcal Electronic energy + Delta-G solvation = -32457.585054 eV Core-core repulsion = 28329.631108 eV Total energy + Delta-G solvation = -4127.953946 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.82226 -40.59253 -39.09979 -37.70093 -36.29328 -35.20067 -34.42681 -33.66428 -31.89121 -30.66384 -28.98809 -28.24959 -26.86096 -25.92801 -25.61388 -24.89340 -23.59779 -22.93267 -21.20531 -20.21236 -20.00039 -18.77432 -18.45140 -17.83877 -17.23003 -17.06265 -16.86356 -16.64570 -16.18767 -15.89550 -15.65676 -15.45566 -15.36912 -15.25865 -14.94357 -14.56144 -14.39811 -13.90646 -13.73595 -13.64181 -13.36701 -13.32326 -13.24014 -13.13685 -12.91516 -12.85310 -12.78997 -12.59606 -12.50166 -12.24040 -12.08426 -12.02046 -11.95942 -11.79016 -11.74071 -11.43112 -11.33975 -11.11406 -10.94349 -10.87423 -10.44963 -10.17939 -9.95942 -8.96351 -7.95510 -5.27902 1.44670 1.46035 1.55188 1.84009 2.16920 2.49027 2.87694 3.15585 3.23510 3.38417 3.60468 3.66718 3.70879 3.97151 4.01692 4.09175 4.12202 4.14975 4.20300 4.25951 4.31281 4.38391 4.39324 4.49463 4.65195 4.69588 4.71649 4.72101 4.79695 4.82436 4.85551 4.92367 4.98260 5.00501 5.03883 5.04378 5.11544 5.12568 5.13796 5.18186 5.20491 5.22737 5.34232 5.39202 5.46123 5.50205 5.76107 5.88459 6.44688 6.73866 6.89342 6.93042 7.46276 7.54691 8.49513 9.21737 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016509 B = 0.003048 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.666539 B = 9184.671882 C = 9907.584955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 C -0.136 4.136 4 C 0.520 3.480 5 O -0.563 6.563 6 N -0.707 5.707 7 C 0.158 3.842 8 C -0.087 4.087 9 C 0.094 3.906 10 O -0.593 6.593 11 C 0.177 3.823 12 N -0.631 5.631 13 C -0.241 4.241 14 H 0.076 0.924 15 C -0.056 4.056 16 N -0.944 5.944 17 Si 0.977 3.023 18 H -0.285 1.285 19 H -0.289 1.289 20 H -0.273 1.273 21 C 0.128 3.872 22 C 0.113 3.887 23 H 0.039 0.961 24 C -0.147 4.147 25 C -0.122 4.122 26 C -0.150 4.150 27 C 0.055 3.945 28 O -0.390 6.390 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.411 0.589 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.397 0.603 41 H 0.033 0.967 42 H 0.057 0.943 43 H 0.252 0.748 44 H 0.033 0.967 45 H 0.034 0.966 46 H 0.096 0.904 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.060 0.940 50 H 0.070 0.930 51 H 0.084 0.916 52 H 0.088 0.912 53 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.306 3.911 -24.352 26.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.072 4.072 3 C -0.193 4.193 4 C 0.307 3.693 5 O -0.441 6.441 6 N -0.360 5.360 7 C 0.070 3.930 8 C -0.126 4.126 9 C 0.017 3.983 10 O -0.402 6.402 11 C 0.051 3.949 12 N -0.358 5.358 13 C -0.369 4.369 14 H 0.094 0.906 15 C -0.250 4.250 16 N -0.592 5.592 17 Si 0.805 3.195 18 H -0.212 1.212 19 H -0.215 1.215 20 H -0.198 1.198 21 C 0.002 3.998 22 C 0.055 3.945 23 H 0.057 0.943 24 C -0.184 4.184 25 C -0.159 4.159 26 C -0.188 4.188 27 C -0.021 4.021 28 O -0.309 6.309 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.248 0.752 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.247 0.753 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.114 0.886 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.079 0.921 50 H 0.089 0.911 51 H 0.103 0.897 52 H 0.106 0.894 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.047 3.057 -23.907 25.410 hybrid contribution 0.245 0.114 1.141 1.172 sum -7.802 3.172 -22.767 24.275 Atomic orbital electron populations 1.21967 0.89367 1.03199 1.05208 1.20903 0.98633 0.97187 0.90446 1.21856 1.01092 0.92200 1.04136 1.21066 0.79097 0.84184 0.84934 1.90684 1.37879 1.28509 1.86981 1.45942 1.58763 1.26836 1.04455 1.22135 0.93650 0.92341 0.84861 1.21166 0.94841 0.95357 1.01274 1.21940 0.90956 0.85474 0.99945 1.86443 1.25062 1.32899 1.95770 1.22349 0.89437 0.93662 0.89427 1.45964 1.22958 1.66706 1.00190 1.19300 1.06557 1.27137 0.83889 0.90588 1.25563 0.98611 1.00347 1.00460 1.69948 1.19939 1.43395 1.25887 0.85090 0.77660 0.77774 0.78974 1.21219 1.21528 1.19776 1.22795 0.95032 0.97660 0.84302 1.21845 0.81328 0.97475 0.93865 0.94258 1.22335 1.02216 1.00660 0.93208 1.21609 0.94769 1.01163 0.98407 1.22160 0.97171 1.01878 0.97545 1.22620 0.98387 0.94915 0.86222 1.87973 1.19829 1.77107 1.45983 0.90075 0.88256 0.92521 0.93761 0.88798 0.91027 0.75229 0.92427 0.93122 0.93280 0.91746 0.75331 0.94956 0.92478 0.93879 0.94848 0.94859 0.88570 0.89917 0.89568 0.92128 0.91111 0.89707 0.89391 0.94323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.02 71.98 0.58 -1.32 16 2 C -0.07 -1.42 0.48 -52.93 -0.03 -1.45 16 3 C -0.14 -2.43 7.87 71.98 0.57 -1.86 16 4 C 0.52 15.95 6.00 87.66 0.53 16.47 16 5 O -0.56 -22.62 13.74 14.43 0.20 -22.42 16 6 N -0.71 -21.17 4.43 -427.55 -1.89 -23.06 16 7 C 0.16 6.23 0.67 5.36 0.00 6.23 16 8 C -0.09 -3.50 4.86 30.60 0.15 -3.35 16 9 C 0.09 2.95 6.77 71.98 0.49 3.43 16 10 O -0.59 -18.16 13.66 -148.98 -2.03 -20.20 16 11 C 0.18 8.24 6.58 86.48 0.57 8.81 16 12 N -0.63 -34.09 3.54 -716.17 -2.54 -36.63 16 13 C -0.24 -14.14 10.70 84.03 0.90 -13.24 16 14 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 15 C -0.06 -3.22 5.50 84.86 0.47 -2.76 16 16 N -0.94 -55.99 11.47 21.65 0.25 -55.74 16 17 Si 0.98 46.60 29.56 68.60 2.03 48.63 16 18 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 20 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 21 C 0.13 6.08 7.40 86.48 0.64 6.72 16 22 C 0.11 2.49 1.45 30.63 0.04 2.54 16 23 H 0.04 1.01 8.10 -2.39 -0.02 0.99 16 24 C -0.15 -2.02 4.70 30.68 0.14 -1.88 16 25 C -0.12 -1.56 6.03 30.71 0.19 -1.38 16 26 C -0.15 -2.24 6.14 30.69 0.19 -2.06 16 27 C 0.06 1.21 6.84 72.01 0.49 1.71 16 28 O -0.39 -10.84 8.63 -131.54 -1.14 -11.98 16 29 H 0.08 0.92 7.68 -2.39 -0.02 0.90 16 30 H 0.10 0.80 6.49 -2.39 -0.02 0.79 16 31 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.04 1.04 7.68 -2.39 -0.02 1.02 16 33 H 0.09 1.16 6.38 -2.39 -0.02 1.14 16 34 H 0.07 1.11 7.47 -2.38 -0.02 1.10 16 35 H 0.41 9.65 7.58 -92.71 -0.70 8.95 16 36 H 0.06 2.44 7.26 -2.39 -0.02 2.42 16 37 H 0.05 2.41 8.02 -2.39 -0.02 2.39 16 38 H 0.05 1.54 7.44 -2.39 -0.02 1.52 16 39 H 0.06 1.65 7.84 -2.39 -0.02 1.63 16 40 H 0.40 7.39 9.12 -74.06 -0.68 6.71 16 41 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.06 2.90 6.69 -2.39 -0.02 2.88 16 43 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 44 H 0.03 1.67 8.10 -2.39 -0.02 1.65 16 45 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.10 0.92 6.57 -2.39 -0.02 0.90 16 47 H 0.08 1.06 6.31 -2.39 -0.02 1.04 16 48 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 53 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -78.28 404.51 0.32 -77.96 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.47 Total: 26.82 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 5.91 Total: 16.62 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -4.18 Total: -115.43 kcal Atomic # 8 Polarization: -51.63 SS G_CDS: -2.97 Total: -54.60 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -78.28 0.32 -77.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717503864.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.154 kcal (2) G-P(sol) polarization free energy of solvation -78.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds