Wall clock time and date at job start Sat Apr 11 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46677 * 2 1 4 4 C 1.53004 * 109.47233 * 184.90997 * 3 2 1 5 5 H 1.09004 * 109.46973 * 179.62439 * 4 3 2 6 6 O 1.42898 * 109.47135 * 59.62499 * 4 3 2 7 7 C 1.42896 * 114.00028 * 90.85976 * 6 4 3 8 8 C 1.53006 * 109.47058 * 184.76969 * 7 6 4 9 9 C 1.50700 * 109.46866 * 299.62747 * 4 3 2 10 10 O 1.21277 * 120.00463 * 111.35139 * 9 4 3 11 11 N 1.34785 * 119.99874 * 291.34504 * 9 4 3 12 12 C 1.47087 * 125.62733 * 355.12521 * 11 9 4 13 13 C 1.54458 * 107.29436 * 179.01802 * 12 11 9 14 14 C 1.54376 * 103.03276 * 338.40884 * 13 12 11 15 15 C 1.47578 * 125.63100 * 175.11884 * 11 9 4 16 16 C 1.52362 * 110.37588 * 152.50873 * 14 13 12 17 17 N 1.47339 * 108.39732 * 73.34298 * 16 14 13 18 18 C 1.36937 * 121.07821 * 229.16755 * 17 16 14 19 19 H 1.08003 * 120.00471 * 148.99865 * 18 17 16 20 20 C 1.38819 * 120.00152 * 329.00145 * 18 17 16 21 21 N 1.31620 * 119.99640 * 347.56768 * 20 18 17 22 22 Si 1.86797 * 119.99964 * 167.56785 * 20 18 17 23 23 H 1.48498 * 109.47244 * 60.00126 * 22 20 18 24 24 H 1.48504 * 109.47073 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47494 * 299.99942 * 22 20 18 26 26 C 1.47164 * 117.84070 * 49.19397 * 17 16 14 27 27 C 1.53266 * 108.57767 * 308.78489 * 26 17 16 28 28 O 1.41884 * 110.71523 * 276.38486 * 14 13 12 29 29 H 1.09002 * 109.47133 * 299.99523 * 1 2 3 30 30 H 1.08999 * 109.47522 * 60.00316 * 1 2 3 31 31 H 1.09006 * 109.46641 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47133 * 240.00477 * 2 1 3 33 33 H 1.08999 * 109.47522 * 119.99684 * 2 1 3 34 34 H 1.09004 * 109.47210 * 64.90828 * 3 2 1 35 35 H 1.09001 * 109.47278 * 304.91210 * 3 2 1 36 36 H 1.08999 * 109.47799 * 304.77448 * 7 6 4 37 37 H 1.09009 * 109.46655 * 64.77259 * 7 6 4 38 38 H 1.08996 * 109.46959 * 180.02562 * 8 7 6 39 39 H 1.09002 * 109.46978 * 300.00369 * 8 7 6 40 40 H 1.08998 * 109.46831 * 60.00191 * 8 7 6 41 41 H 1.08998 * 109.88378 * 59.59572 * 12 11 9 42 42 H 1.08994 * 109.87916 * 298.44175 * 12 11 9 43 43 H 1.09003 * 110.73363 * 96.84476 * 13 12 11 44 44 H 1.09000 * 110.73580 * 219.97192 * 13 12 11 45 45 H 1.08998 * 110.37336 * 322.13255 * 15 11 9 46 46 H 1.08994 * 110.37229 * 84.36252 * 15 11 9 47 47 H 1.09004 * 109.68232 * 193.07023 * 16 14 13 48 48 H 1.09007 * 109.67916 * 313.58115 * 16 14 13 49 49 H 0.97003 * 119.99413 * 180.02562 * 21 20 18 50 50 H 1.08995 * 109.62109 * 68.52068 * 26 17 16 51 51 H 1.09002 * 109.61368 * 188.87521 * 26 17 16 52 52 H 1.08996 * 109.51646 * 172.90066 * 27 26 17 53 53 H 1.09005 * 109.51477 * 293.05018 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5649 1.4445 -0.1235 5 1 3.9276 2.4724 -0.1302 6 8 3.9452 0.7973 -1.3394 7 6 4.0666 1.6816 -2.4552 8 6 4.3587 0.8706 -3.7193 9 6 4.1645 0.7078 1.0465 10 8 4.7163 -0.3583 0.8736 11 7 4.0875 1.2337 2.2851 12 6 3.5404 2.5569 2.6217 13 6 3.6362 2.7169 4.1549 14 6 3.7258 1.2582 4.6523 15 6 4.5382 0.5770 3.5275 16 6 4.4776 1.1943 5.9760 17 7 3.6021 1.7277 7.0342 18 6 4.0546 2.6715 7.9171 19 1 3.3700 3.3985 8.3285 20 6 5.3934 2.6940 8.2835 21 7 6.1745 1.6776 7.9849 22 14 6.0863 4.1667 9.2002 23 1 5.3601 4.3369 10.4843 24 1 7.5291 3.9455 9.4737 25 1 5.9205 5.3881 8.3722 26 6 2.2257 1.2126 7.1120 27 6 1.5846 1.3212 5.7241 28 8 2.4325 0.6851 4.7621 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.7501 1.9304 0.9307 35 1 1.6064 1.9812 -0.8427 36 1 3.1356 2.2335 -2.5846 37 1 4.8824 2.3822 -2.2764 38 1 4.4518 1.5453 -4.5704 39 1 5.2898 0.3188 -3.5899 40 1 3.5431 0.1701 -3.8981 41 1 2.4986 2.6182 2.3071 42 1 4.1243 3.3352 2.1306 43 1 4.5320 3.2740 4.4295 44 1 2.7444 3.2048 4.5485 45 1 4.3183 -0.4901 3.4940 46 1 5.6057 0.7392 3.6767 47 1 4.7373 0.1599 6.2011 48 1 5.3850 1.7950 5.9122 49 1 7.1099 1.6931 8.2412 50 1 2.2425 0.1693 7.4269 51 1 1.6544 1.8021 7.8291 52 1 0.6117 0.8299 5.7329 53 1 1.4603 2.3718 5.4615 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717573946.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:20 Heat of formation + Delta-G solvation = -100.961144 kcal Electronic energy + Delta-G solvation = -32309.894026 eV Core-core repulsion = 28182.553764 eV Total energy + Delta-G solvation = -4127.340262 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.47306 -39.21814 -37.70309 -36.04540 -34.85531 -34.45786 -31.84180 -31.41643 -31.27127 -29.58374 -29.23010 -27.39729 -25.88798 -24.41521 -23.49272 -23.09675 -22.69205 -21.43471 -21.12147 -19.37403 -18.81766 -17.15263 -17.00769 -16.85078 -16.17973 -15.97957 -15.59596 -15.11523 -14.87768 -14.66274 -14.43970 -14.38797 -14.11160 -13.75851 -13.40152 -13.37768 -13.09325 -12.86763 -12.76600 -12.63854 -12.50228 -12.27465 -12.18864 -12.10944 -12.01828 -11.52991 -11.37953 -11.31343 -11.06795 -11.01005 -10.89469 -10.87062 -10.75862 -10.57622 -10.35278 -10.31183 -10.03907 -9.94300 -9.56510 -9.40829 -9.04325 -8.59843 -8.43298 -6.72506 -5.89245 -3.37834 2.72441 2.79121 3.30585 3.36866 3.37532 3.73669 4.15052 4.37655 4.44768 4.59124 4.72655 4.82905 4.84825 4.93894 4.96252 5.06905 5.10513 5.15857 5.25521 5.29111 5.35051 5.41091 5.44545 5.50904 5.56960 5.63013 5.67885 5.72800 5.76626 5.82524 5.84572 5.89908 5.96519 6.03571 6.04821 6.13528 6.18231 6.24546 6.29010 6.34469 6.41132 6.47958 6.61436 6.77475 6.95321 7.00812 7.39422 7.66678 7.67525 7.89830 8.30512 8.32075 9.06490 9.67895 10.28454 11.19038 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.003015 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.140242 B = 9283.787566 C =10111.044675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.137 4.137 4 C 0.079 3.921 5 H 0.081 0.919 6 O -0.354 6.354 7 C 0.054 3.946 8 C -0.150 4.150 9 C 0.532 3.468 10 O -0.524 6.524 11 N -0.610 5.610 12 C 0.098 3.902 13 C -0.144 4.144 14 C 0.086 3.914 15 C 0.127 3.873 16 C 0.166 3.834 17 N -0.591 5.591 18 C -0.257 4.257 19 H 0.066 0.934 20 C 0.008 3.992 21 N -0.902 5.902 22 Si 0.905 3.095 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.109 3.891 27 C 0.047 3.953 28 O -0.372 6.372 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.031 0.969 48 H 0.092 0.908 49 H 0.257 0.743 50 H 0.026 0.974 51 H 0.062 0.938 52 H 0.082 0.918 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.562 3.251 -18.013 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.175 4.175 4 C 0.017 3.983 5 H 0.098 0.902 6 O -0.273 6.273 7 C -0.023 4.023 8 C -0.207 4.207 9 C 0.319 3.681 10 O -0.399 6.399 11 N -0.346 5.346 12 C -0.025 4.025 13 C -0.182 4.182 14 C 0.044 3.956 15 C 0.004 3.996 16 C 0.040 3.960 17 N -0.315 5.315 18 C -0.387 4.387 19 H 0.083 0.917 20 C -0.192 4.192 21 N -0.545 5.545 22 Si 0.734 3.266 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.209 1.209 26 C -0.018 4.018 27 C -0.031 4.031 28 O -0.292 6.292 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.050 0.950 48 H 0.110 0.890 49 H 0.067 0.933 50 H 0.044 0.956 51 H 0.081 0.919 52 H 0.100 0.900 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.086 2.263 -18.265 20.103 hybrid contribution 0.405 1.381 0.788 1.641 sum -7.681 3.644 -17.478 19.436 Atomic orbital electron populations 1.21745 0.95825 1.01627 1.01372 1.21420 0.95503 0.95722 1.03158 1.22115 0.93067 0.99126 1.03144 1.21871 0.95259 0.96055 0.85090 0.90150 1.88050 1.89586 1.33652 1.15971 1.22577 0.99719 0.93000 0.86984 1.21719 1.03073 1.00758 0.95141 1.19853 0.79842 0.85923 0.82461 1.90710 1.43070 1.22173 1.83943 1.48464 1.61672 1.18446 1.05993 1.22246 0.98409 0.84135 0.97662 1.23027 1.04397 0.98807 0.91955 1.22783 0.85114 0.90823 0.96837 1.22178 0.98043 0.98410 0.80942 1.21064 0.93327 0.98824 0.82788 1.43989 1.07909 1.46899 1.32697 1.19066 0.93408 1.05823 1.20355 0.91660 1.25187 0.98040 0.97212 0.98730 1.69971 1.06031 1.28826 1.49667 0.86349 0.78024 0.82324 0.79897 1.20797 1.21535 1.20904 1.21602 0.88172 0.97653 0.94334 1.23090 0.92779 0.96818 0.90425 1.87658 1.24009 1.57529 1.59954 0.92755 0.93117 0.92753 0.91060 0.91758 0.90045 0.90943 0.93313 0.93363 0.91156 0.91651 0.91788 0.91425 0.91815 0.89403 0.89527 0.89844 0.89687 0.95045 0.89024 0.93317 0.95586 0.91938 0.90016 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.12 -1.46 5.52 -26.73 -0.15 -1.61 16 3 C -0.14 -1.45 5.09 -26.73 -0.14 -1.59 16 4 C 0.08 0.98 2.22 -27.88 -0.06 0.92 16 5 H 0.08 0.82 7.67 -51.93 -0.40 0.42 16 6 O -0.35 -4.71 8.76 -54.99 -0.48 -5.19 16 7 C 0.05 0.50 6.45 37.16 0.24 0.74 16 8 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 9 C 0.53 8.64 6.03 -10.98 -0.07 8.58 16 10 O -0.52 -10.61 16.83 -14.20 -0.24 -10.85 16 11 N -0.61 -9.50 3.33 -170.47 -0.57 -10.06 16 12 C 0.10 1.28 6.21 -2.96 -0.02 1.26 16 13 C -0.14 -2.27 5.85 -25.25 -0.15 -2.42 16 14 C 0.09 1.58 0.85 -89.40 -0.08 1.51 16 15 C 0.13 2.22 6.09 -2.62 -0.02 2.21 16 16 C 0.17 3.75 4.03 -3.91 -0.02 3.73 16 17 N -0.59 -13.97 2.96 -172.24 -0.51 -14.48 16 18 C -0.26 -6.63 9.63 -15.06 -0.14 -6.77 16 19 H 0.07 1.65 7.86 -52.48 -0.41 1.23 16 20 C 0.01 0.21 5.02 -17.43 -0.09 0.12 16 21 N -0.90 -25.07 11.26 55.49 0.62 -24.44 16 22 Si 0.90 20.71 29.57 -169.99 -5.03 15.68 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 C 0.11 2.18 6.71 -3.54 -0.02 2.15 16 27 C 0.05 0.79 6.78 37.30 0.25 1.04 16 28 O -0.37 -6.92 10.29 -35.22 -0.36 -7.29 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.92 7.53 -51.93 -0.39 0.53 16 33 H 0.06 0.95 7.41 -51.93 -0.38 0.57 16 34 H 0.08 0.85 5.51 -51.93 -0.29 0.56 16 35 H 0.07 0.63 7.88 -51.93 -0.41 0.22 16 36 H 0.05 0.37 7.88 -51.93 -0.41 -0.04 16 37 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.79 5.77 -51.93 -0.30 0.49 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.46 7.83 -51.93 -0.41 1.05 16 44 H 0.09 1.35 6.07 -51.93 -0.32 1.04 16 45 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 46 H 0.09 1.49 8.01 -51.93 -0.42 1.07 16 47 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.09 2.25 6.23 -51.92 -0.32 1.93 16 49 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 50 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 52 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 53 H 0.05 0.75 6.22 -51.93 -0.32 0.42 16 LS Contribution 406.78 15.07 6.13 6.13 Total: -1.00 -31.32 406.78 -9.53 -40.84 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -9.39 Total: 1.71 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 0.30 Total: 7.94 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.45 Total: -48.98 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -1.08 Total: -23.32 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.32 -9.53 -40.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717573946.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.116 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds