Wall clock time and date at job start Sat Apr 11 2020 06:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46677 * 2 1 4 4 C 1.53004 * 109.47233 * 184.90997 * 3 2 1 5 5 H 1.09004 * 109.46973 * 179.62439 * 4 3 2 6 6 O 1.42898 * 109.47135 * 59.62499 * 4 3 2 7 7 C 1.42896 * 114.00028 * 90.85976 * 6 4 3 8 8 C 1.53006 * 109.47058 * 184.76969 * 7 6 4 9 9 C 1.50700 * 109.46866 * 299.62747 * 4 3 2 10 10 O 1.21277 * 120.00463 * 111.35139 * 9 4 3 11 11 N 1.34785 * 119.99874 * 291.34504 * 9 4 3 12 12 C 1.47087 * 125.62733 * 355.12521 * 11 9 4 13 13 C 1.54458 * 107.29436 * 179.01802 * 12 11 9 14 14 C 1.54376 * 103.03276 * 338.40884 * 13 12 11 15 15 C 1.47578 * 125.63100 * 175.11884 * 11 9 4 16 16 C 1.52362 * 110.37588 * 152.50873 * 14 13 12 17 17 N 1.47339 * 108.39732 * 73.34298 * 16 14 13 18 18 C 1.36937 * 121.07821 * 229.16755 * 17 16 14 19 19 H 1.08003 * 120.00471 * 148.99865 * 18 17 16 20 20 C 1.38819 * 120.00152 * 329.00145 * 18 17 16 21 21 N 1.31620 * 119.99640 * 347.56768 * 20 18 17 22 22 Si 1.86797 * 119.99964 * 167.56785 * 20 18 17 23 23 H 1.48498 * 109.47244 * 60.00126 * 22 20 18 24 24 H 1.48504 * 109.47073 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47494 * 299.99942 * 22 20 18 26 26 C 1.47164 * 117.84070 * 49.19397 * 17 16 14 27 27 C 1.53266 * 108.57767 * 308.78489 * 26 17 16 28 28 O 1.41884 * 110.71523 * 276.38486 * 14 13 12 29 29 H 1.09002 * 109.47133 * 299.99523 * 1 2 3 30 30 H 1.08999 * 109.47522 * 60.00316 * 1 2 3 31 31 H 1.09006 * 109.46641 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47133 * 240.00477 * 2 1 3 33 33 H 1.08999 * 109.47522 * 119.99684 * 2 1 3 34 34 H 1.09004 * 109.47210 * 64.90828 * 3 2 1 35 35 H 1.09001 * 109.47278 * 304.91210 * 3 2 1 36 36 H 1.08999 * 109.47799 * 304.77448 * 7 6 4 37 37 H 1.09009 * 109.46655 * 64.77259 * 7 6 4 38 38 H 1.08996 * 109.46959 * 180.02562 * 8 7 6 39 39 H 1.09002 * 109.46978 * 300.00369 * 8 7 6 40 40 H 1.08998 * 109.46831 * 60.00191 * 8 7 6 41 41 H 1.08998 * 109.88378 * 59.59572 * 12 11 9 42 42 H 1.08994 * 109.87916 * 298.44175 * 12 11 9 43 43 H 1.09003 * 110.73363 * 96.84476 * 13 12 11 44 44 H 1.09000 * 110.73580 * 219.97192 * 13 12 11 45 45 H 1.08998 * 110.37336 * 322.13255 * 15 11 9 46 46 H 1.08994 * 110.37229 * 84.36252 * 15 11 9 47 47 H 1.09004 * 109.68232 * 193.07023 * 16 14 13 48 48 H 1.09007 * 109.67916 * 313.58115 * 16 14 13 49 49 H 0.97003 * 119.99413 * 180.02562 * 21 20 18 50 50 H 1.08995 * 109.62109 * 68.52068 * 26 17 16 51 51 H 1.09002 * 109.61368 * 188.87521 * 26 17 16 52 52 H 1.08996 * 109.51646 * 172.90066 * 27 26 17 53 53 H 1.09005 * 109.51477 * 293.05018 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5649 1.4445 -0.1235 5 1 3.9276 2.4724 -0.1302 6 8 3.9452 0.7973 -1.3394 7 6 4.0666 1.6816 -2.4552 8 6 4.3587 0.8706 -3.7193 9 6 4.1645 0.7078 1.0465 10 8 4.7163 -0.3583 0.8736 11 7 4.0875 1.2337 2.2851 12 6 3.5404 2.5569 2.6217 13 6 3.6362 2.7169 4.1549 14 6 3.7258 1.2582 4.6523 15 6 4.5382 0.5770 3.5275 16 6 4.4776 1.1943 5.9760 17 7 3.6021 1.7277 7.0342 18 6 4.0546 2.6715 7.9171 19 1 3.3700 3.3985 8.3285 20 6 5.3934 2.6940 8.2835 21 7 6.1745 1.6776 7.9849 22 14 6.0863 4.1667 9.2002 23 1 5.3601 4.3369 10.4843 24 1 7.5291 3.9455 9.4737 25 1 5.9205 5.3881 8.3722 26 6 2.2257 1.2126 7.1120 27 6 1.5846 1.3212 5.7241 28 8 2.4325 0.6851 4.7621 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.7501 1.9304 0.9307 35 1 1.6064 1.9812 -0.8427 36 1 3.1356 2.2335 -2.5846 37 1 4.8824 2.3822 -2.2764 38 1 4.4518 1.5453 -4.5704 39 1 5.2898 0.3188 -3.5899 40 1 3.5431 0.1701 -3.8981 41 1 2.4986 2.6182 2.3071 42 1 4.1243 3.3352 2.1306 43 1 4.5320 3.2740 4.4295 44 1 2.7444 3.2048 4.5485 45 1 4.3183 -0.4901 3.4940 46 1 5.6057 0.7392 3.6767 47 1 4.7373 0.1599 6.2011 48 1 5.3850 1.7950 5.9122 49 1 7.1099 1.6931 8.2412 50 1 2.2425 0.1693 7.4269 51 1 1.6544 1.8021 7.8291 52 1 0.6117 0.8299 5.7329 53 1 1.4603 2.3718 5.4615 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717573946.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:19 Heat of formation + Delta-G solvation = -120.080273 kcal Electronic energy + Delta-G solvation = -32310.723094 eV Core-core repulsion = 28182.553764 eV Total energy + Delta-G solvation = -4128.169330 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.75822 -40.51595 -38.79655 -37.45986 -36.23500 -35.72147 -33.25810 -33.04817 -32.25934 -30.89178 -30.22039 -28.98996 -27.44099 -25.64444 -25.01120 -23.94326 -23.79800 -23.00167 -22.09235 -20.65109 -20.24867 -18.89692 -18.20777 -17.95342 -17.50179 -17.04497 -16.78736 -16.53193 -16.19732 -16.12606 -15.75680 -15.57512 -15.30402 -15.15129 -14.91427 -14.55147 -14.50538 -14.19975 -14.03715 -13.64618 -13.61816 -13.41210 -13.24783 -13.10388 -13.00758 -12.85039 -12.74363 -12.63564 -12.48577 -12.28235 -12.20283 -12.17767 -12.11658 -11.88448 -11.86334 -11.74908 -11.48026 -11.13892 -10.94928 -10.73323 -10.49793 -10.40959 -9.71084 -8.65850 -7.88762 -5.41085 1.48746 1.49495 1.51649 1.57024 1.65517 2.48524 2.72015 2.84319 3.25529 3.35472 3.50657 3.58945 3.70791 3.87624 3.91772 4.01829 4.10388 4.17823 4.22622 4.25500 4.30279 4.38256 4.40736 4.46899 4.51213 4.57505 4.59474 4.64485 4.68563 4.75637 4.77493 4.86160 4.88196 4.93669 4.97720 5.03344 5.05437 5.06370 5.12722 5.20507 5.26020 5.26891 5.28937 5.30532 5.46014 5.50976 5.63155 6.14188 6.33078 6.42000 6.48229 7.07408 7.08791 7.75161 8.33062 9.17222 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.003015 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.140242 B = 9283.787566 C =10111.044675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C -0.130 4.130 4 C 0.084 3.916 5 H 0.113 0.887 6 O -0.386 6.386 7 C 0.046 3.954 8 C -0.149 4.149 9 C 0.525 3.475 10 O -0.577 6.577 11 N -0.608 5.608 12 C 0.102 3.898 13 C -0.136 4.136 14 C 0.096 3.904 15 C 0.129 3.871 16 C 0.179 3.821 17 N -0.607 5.607 18 C -0.260 4.260 19 H 0.074 0.926 20 C -0.046 4.046 21 N -0.938 5.938 22 Si 0.969 3.031 23 H -0.277 1.277 24 H -0.299 1.299 25 H -0.271 1.271 26 C 0.102 3.898 27 C 0.054 3.946 28 O -0.381 6.381 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.026 0.974 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.076 0.924 47 H -0.011 1.011 48 H 0.066 0.934 49 H 0.250 0.750 50 H 0.009 0.991 51 H 0.075 0.925 52 H 0.115 0.885 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.065 6.496 -19.910 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C -0.167 4.167 4 C 0.023 3.977 5 H 0.130 0.870 6 O -0.305 6.305 7 C -0.030 4.030 8 C -0.207 4.207 9 C 0.315 3.685 10 O -0.456 6.456 11 N -0.342 5.342 12 C -0.019 4.019 13 C -0.174 4.174 14 C 0.054 3.946 15 C 0.005 3.995 16 C 0.052 3.948 17 N -0.331 5.331 18 C -0.390 4.390 19 H 0.092 0.908 20 C -0.242 4.242 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.202 1.202 24 H -0.226 1.226 25 H -0.196 1.196 26 C -0.023 4.023 27 C -0.023 4.023 28 O -0.300 6.300 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.114 0.886 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.007 0.993 48 H 0.084 0.916 49 H 0.059 0.941 50 H 0.027 0.973 51 H 0.093 0.907 52 H 0.133 0.867 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.641 5.545 -20.172 23.470 hybrid contribution 1.163 0.278 1.421 1.857 sum -9.478 5.822 -18.750 21.802 Atomic orbital electron populations 1.21707 0.93954 1.01844 1.02522 1.21363 0.97099 0.96602 1.00621 1.22130 0.91526 0.98123 1.04934 1.21923 0.96115 0.96412 0.83208 0.86978 1.88036 1.89864 1.35615 1.16977 1.22852 1.01349 0.92921 0.85888 1.21757 1.01991 1.01098 0.95812 1.20779 0.78896 0.85517 0.83352 1.90678 1.45483 1.24689 1.84753 1.48505 1.61350 1.19217 1.05164 1.22424 1.00562 0.83309 0.95605 1.22926 1.04294 0.96151 0.94061 1.22422 0.84654 0.93160 0.94392 1.21932 0.97661 0.97419 0.82448 1.20765 0.93229 0.95627 0.85180 1.44247 1.09233 1.46800 1.32822 1.19435 0.93607 1.06070 1.19893 0.90843 1.25946 0.98548 0.99608 1.00089 1.70156 1.05835 1.30869 1.51433 0.85331 0.76532 0.79596 0.78902 1.20238 1.22584 1.19609 1.21803 0.86733 0.96630 0.97144 1.23164 0.93193 0.98358 0.87589 1.87665 1.23818 1.58338 1.60226 0.92351 0.91060 0.93165 0.92502 0.95506 0.89145 0.87723 0.90802 0.92511 0.88541 0.93323 0.92254 0.88695 0.88551 0.90552 0.88571 0.92103 0.90567 0.99302 0.91593 0.94071 0.97344 0.90673 0.86670 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.91 71.98 0.71 -1.78 16 2 C -0.12 -2.73 5.52 30.59 0.17 -2.56 16 3 C -0.13 -2.29 5.09 30.60 0.16 -2.14 16 4 C 0.08 1.88 2.22 29.85 0.07 1.95 16 5 H 0.11 1.78 7.67 -2.38 -0.02 1.76 16 6 O -0.39 -9.65 8.76 -130.09 -1.14 -10.79 16 7 C 0.05 0.72 6.45 71.98 0.46 1.18 16 8 C -0.15 -2.14 10.28 71.98 0.74 -1.40 16 9 C 0.53 16.86 6.03 87.66 0.53 17.39 16 10 O -0.58 -24.36 16.83 15.87 0.27 -24.10 16 11 N -0.61 -18.45 3.33 -811.65 -2.71 -21.16 16 12 C 0.10 2.33 6.21 86.76 0.54 2.87 16 13 C -0.14 -4.04 5.85 31.56 0.18 -3.86 16 14 C 0.10 3.54 0.85 -10.00 -0.01 3.53 16 15 C 0.13 4.73 6.09 86.71 0.53 5.26 16 16 C 0.18 8.43 4.03 86.01 0.35 8.78 16 17 N -0.61 -29.07 2.96 -698.85 -2.07 -31.14 16 18 C -0.26 -13.45 9.63 84.04 0.81 -12.64 16 19 H 0.07 3.62 7.86 -2.91 -0.02 3.60 16 20 C -0.05 -2.47 5.02 84.86 0.43 -2.04 16 21 N -0.94 -54.30 11.26 21.65 0.24 -54.06 16 22 Si 0.97 42.85 29.57 68.60 2.03 44.88 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 C 0.10 4.05 6.71 86.34 0.58 4.62 16 27 C 0.05 1.69 6.78 72.07 0.49 2.18 16 28 O -0.38 -13.86 10.29 -148.95 -1.53 -15.39 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.06 1.45 7.53 -2.39 -0.02 1.43 16 33 H 0.03 0.80 7.41 -2.39 -0.02 0.78 16 34 H 0.09 1.45 5.51 -2.39 -0.01 1.44 16 35 H 0.10 1.25 7.88 -2.39 -0.02 1.23 16 36 H 0.07 0.79 7.88 -2.39 -0.02 0.77 16 37 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.10 1.72 5.77 -2.39 -0.01 1.71 16 42 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.08 2.46 7.83 -2.39 -0.02 2.44 16 44 H 0.10 2.69 6.07 -2.39 -0.01 2.67 16 45 H 0.06 2.47 8.10 -2.39 -0.02 2.46 16 46 H 0.08 2.88 8.01 -2.39 -0.02 2.86 16 47 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 48 H 0.07 3.43 6.23 -2.38 -0.01 3.41 16 49 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 50 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 51 H 0.07 2.74 7.96 -2.39 -0.02 2.73 16 52 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 53 H 0.06 1.84 6.22 -2.38 -0.01 1.82 16 Total: -1.00 -73.01 406.78 2.70 -70.31 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.87 Total: 20.08 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: 6.73 Total: 21.36 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -4.53 Total: -106.35 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -2.41 Total: -50.28 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -73.01 2.70 -70.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717573946.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.771 kcal (2) G-P(sol) polarization free energy of solvation -73.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds