Wall clock time and date at job start Sat Apr 11 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00235 * 2 1 4 4 C 1.52997 * 109.47393 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47230 * 299.99850 * 4 3 2 6 6 C 1.53002 * 109.47138 * 59.99772 * 4 3 2 7 7 C 1.53003 * 109.47167 * 179.97438 * 4 3 2 8 8 C 1.50700 * 109.46945 * 179.97438 * 7 4 3 9 9 O 1.21286 * 120.00265 * 0.02562 * 8 7 4 10 10 N 1.34781 * 119.99989 * 179.97438 * 8 7 4 11 11 C 1.47083 * 125.62494 * 359.70205 * 10 8 7 12 12 C 1.54479 * 107.29581 * 178.84346 * 11 10 8 13 13 C 1.54359 * 102.94789 * 338.89763 * 12 11 10 14 14 C 1.47568 * 125.63116 * 180.02562 * 10 8 7 15 15 C 1.52363 * 110.40974 * 152.16518 * 13 12 11 16 16 N 1.47337 * 108.40840 * 173.58319 * 15 13 12 17 17 C 1.36938 * 121.07295 * 130.79611 * 16 15 13 18 18 H 1.08002 * 119.99962 * 205.68818 * 17 16 15 19 19 C 1.38813 * 120.00175 * 25.68654 * 17 16 15 20 20 N 1.31613 * 120.00211 * 16.71803 * 19 17 16 21 21 Si 1.86802 * 119.99636 * 196.71637 * 19 17 16 22 22 H 1.48501 * 109.47179 * 60.00146 * 21 19 17 23 23 H 1.48507 * 109.46771 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47062 * 299.99757 * 21 19 17 25 25 C 1.47169 * 117.85012 * 310.80996 * 16 15 13 26 26 C 1.53278 * 108.54380 * 51.24628 * 25 16 15 27 27 O 1.41885 * 110.74748 * 276.09301 * 13 12 11 28 28 H 1.08997 * 109.47405 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47244 * 300.00024 * 1 2 3 30 30 H 1.08994 * 109.47269 * 59.99621 * 1 2 3 31 31 H 1.09006 * 109.46798 * 300.00284 * 3 2 1 32 32 H 1.08999 * 109.46980 * 59.99914 * 3 2 1 33 33 H 1.09002 * 109.46592 * 59.99984 * 5 4 3 34 34 H 1.09000 * 109.47006 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.46961 * 300.00257 * 5 4 3 36 36 H 1.09010 * 109.46743 * 60.00341 * 6 4 3 37 37 H 1.09000 * 109.47242 * 179.97438 * 6 4 3 38 38 H 1.08993 * 109.46907 * 300.00247 * 6 4 3 39 39 H 1.08998 * 109.47209 * 300.00264 * 7 4 3 40 40 H 1.08999 * 109.46931 * 59.99800 * 7 4 3 41 41 H 1.09002 * 109.87792 * 298.41555 * 11 10 8 42 42 H 1.08991 * 109.88308 * 59.56566 * 11 10 8 43 43 H 1.08991 * 110.89074 * 220.43310 * 12 11 10 44 44 H 1.09001 * 110.65066 * 97.24395 * 12 11 10 45 45 H 1.09004 * 110.37721 * 322.14910 * 14 10 8 46 46 H 1.08997 * 110.38220 * 84.50346 * 14 10 8 47 47 H 1.09009 * 109.67449 * 293.30896 * 15 13 12 48 48 H 1.08991 * 109.68001 * 53.84825 * 15 13 12 49 49 H 0.97002 * 120.00272 * 180.02562 * 20 19 17 50 50 H 1.08996 * 109.62680 * 291.52680 * 25 16 15 51 51 H 1.09003 * 109.77395 * 171.05270 * 25 16 15 52 52 H 1.09006 * 109.50900 * 187.06131 * 26 25 16 53 53 H 1.08993 * 109.51532 * 66.91101 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9874 0.4251 1.2483 6 6 3.9864 0.4255 -1.2502 7 6 4.1577 2.5824 -0.0013 8 6 5.6600 2.4633 -0.0013 9 8 6.1816 1.3684 -0.0013 10 7 6.4240 3.5737 -0.0023 11 6 5.9247 4.9571 -0.0097 12 6 7.1558 5.8899 0.0216 13 6 8.2661 4.9783 0.5864 14 6 7.8994 3.6020 -0.0030 15 6 9.6313 5.4288 0.0818 16 7 10.6658 4.6325 0.7649 17 6 11.6674 4.0208 0.0595 18 1 12.1520 3.1429 0.4605 19 6 12.0600 4.5291 -1.1712 20 7 11.7237 5.7543 -1.5148 21 14 13.0657 3.4741 -2.3395 22 1 12.2995 2.2498 -2.6849 23 1 13.3536 4.2428 -3.5771 24 1 14.3427 3.0910 -1.6858 25 6 10.5876 4.5156 2.2299 26 6 9.1715 4.0673 2.6082 27 8 8.2204 4.9500 2.0042 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6885 1.8463 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 3.5440 -0.5706 1.2482 34 1 5.0741 0.3395 1.2480 35 1 3.6661 0.9659 2.1385 36 1 3.6644 0.9667 -2.1400 37 1 5.0730 0.3398 -1.2509 38 1 3.5430 -0.5702 -1.2501 39 1 3.8357 3.1231 -0.8912 40 1 3.8365 3.1235 0.8887 41 1 5.3439 5.1367 -0.9145 42 1 5.3068 5.1329 0.8707 43 1 6.9823 6.7404 0.6808 44 1 7.4079 6.2275 -0.9836 45 1 8.2947 2.8030 0.6243 46 1 8.2804 3.5108 -1.0201 47 1 9.6960 5.2686 -0.9945 48 1 9.7747 6.4859 0.3052 49 1 11.9977 6.1093 -2.3749 50 1 10.7997 5.4824 2.6862 51 1 11.3107 3.7789 2.5801 52 1 9.0579 4.0962 3.6920 53 1 9.0035 3.0514 2.2508 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734136317.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:41 Heat of formation + Delta-G solvation = -114.332064 kcal Electronic energy + Delta-G solvation = -32066.822472 eV Core-core repulsion = 27938.902403 eV Total energy + Delta-G solvation = -4127.920069 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.71387 -40.56509 -39.06285 -37.62616 -36.30481 -36.16879 -33.36834 -33.11146 -30.40591 -30.03465 -28.89569 -28.21404 -28.13273 -27.12643 -26.14747 -25.03216 -24.41279 -22.62687 -21.01824 -20.32980 -19.64802 -18.90565 -18.28067 -17.66752 -17.23319 -16.86907 -16.75727 -16.65930 -16.35203 -16.16217 -15.71252 -15.48880 -15.34158 -15.20225 -14.88844 -14.69025 -14.56169 -14.50054 -14.16121 -13.70014 -13.48481 -13.29099 -13.02754 -12.98673 -12.83766 -12.70415 -12.65028 -12.51594 -12.46548 -12.29838 -12.20316 -12.15965 -12.13110 -11.89125 -11.79324 -11.67639 -11.59132 -11.15333 -10.80313 -10.56882 -10.51664 -10.43647 -9.55693 -8.74342 -7.92705 -5.37174 1.42886 1.45844 1.51811 1.68076 1.96894 2.45010 2.77083 2.92371 3.21008 3.38059 3.57062 3.68360 3.76132 3.84433 3.99326 4.07015 4.14706 4.23540 4.30188 4.33495 4.43316 4.48118 4.50500 4.54594 4.57118 4.60383 4.62204 4.66365 4.70213 4.75705 4.82273 4.83454 4.90624 4.92819 4.96833 5.01895 5.09377 5.09675 5.11901 5.17503 5.22772 5.25687 5.29435 5.49995 5.50750 5.58850 5.60051 6.27170 6.32689 6.35991 6.62950 7.05861 7.24597 7.73507 8.27105 9.13204 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.002846 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.758888 B = 9835.872039 C =10453.172372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.075 3.925 4 C -0.043 4.043 5 C -0.143 4.143 6 C -0.144 4.144 7 C -0.116 4.116 8 C 0.519 3.481 9 O -0.573 6.573 10 N -0.616 5.616 11 C 0.106 3.894 12 C -0.113 4.113 13 C 0.089 3.911 14 C 0.106 3.894 15 C 0.173 3.827 16 N -0.614 5.614 17 C -0.263 4.263 18 H 0.065 0.935 19 C -0.043 4.043 20 N -0.930 5.930 21 Si 0.960 3.040 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.276 1.276 25 C 0.106 3.894 26 C 0.053 3.947 27 O -0.371 6.371 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.052 0.948 46 H 0.049 0.951 47 H 0.068 0.932 48 H 0.010 0.990 49 H 0.253 0.747 50 H 0.025 0.975 51 H 0.066 0.934 52 H 0.119 0.881 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.739 -1.997 3.783 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.001 4.001 4 C -0.044 4.044 5 C -0.201 4.201 6 C -0.201 4.201 7 C -0.156 4.156 8 C 0.311 3.689 9 O -0.454 6.454 10 N -0.349 5.349 11 C -0.015 4.015 12 C -0.151 4.151 13 C 0.047 3.953 14 C -0.017 4.017 15 C 0.047 3.953 16 N -0.339 5.339 17 C -0.393 4.393 18 H 0.082 0.918 19 C -0.239 4.239 20 N -0.576 5.576 21 Si 0.789 3.211 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.201 1.201 25 C -0.019 4.019 26 C -0.024 4.024 27 O -0.289 6.289 28 H 0.108 0.892 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.125 0.875 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.087 0.913 48 H 0.028 0.972 49 H 0.062 0.938 50 H 0.043 0.957 51 H 0.085 0.915 52 H 0.137 0.863 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -23.484 -2.609 3.751 23.924 hybrid contribution 1.436 -0.500 -0.857 1.746 sum -22.048 -3.109 2.894 22.454 Atomic orbital electron populations 1.22885 0.79779 1.03467 1.00850 1.87862 1.21029 1.28606 1.95567 1.22559 0.91496 0.84593 1.01494 1.20242 0.93535 0.93961 0.96641 1.21926 1.01814 1.00034 0.96277 1.21931 1.01801 1.00063 0.96302 1.21674 0.88508 0.98615 1.06759 1.20970 0.90588 0.82177 0.75202 1.90601 1.75997 1.27143 1.51653 1.48759 1.06149 1.07469 1.72567 1.22287 0.96524 0.78713 1.04017 1.22603 0.92052 0.97962 1.02439 1.22522 0.96929 0.94029 0.81776 1.22282 0.80983 0.98712 0.99736 1.20971 0.84498 0.92350 0.97509 1.44376 1.28318 1.59921 1.01271 1.19401 1.12540 1.05809 1.01550 0.91766 1.25648 1.00586 0.96419 1.01256 1.70122 1.50761 1.14400 1.22271 0.85450 0.78921 0.78189 0.78580 1.21074 1.21474 1.20134 1.21733 0.96410 0.98931 0.84852 1.23075 0.88651 0.92236 0.98461 1.87621 1.57766 1.65161 1.18392 0.89192 0.93119 0.93136 0.91647 0.91642 0.93091 0.92816 0.92578 0.92559 0.92848 0.93094 0.86126 0.86277 0.88181 0.88824 0.87464 0.88832 0.92919 0.93241 0.91331 0.97186 0.93810 0.95714 0.91513 0.86286 0.94614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.83 9.35 -148.98 -1.39 -9.23 16 3 C 0.07 1.17 4.80 71.98 0.35 1.52 16 4 C -0.04 -0.90 0.60 -52.18 -0.03 -0.94 16 5 C -0.14 -3.58 8.03 71.98 0.58 -3.00 16 6 C -0.14 -3.60 8.03 71.98 0.58 -3.02 16 7 C -0.12 -2.14 3.96 29.85 0.12 -2.02 16 8 C 0.52 15.23 7.26 87.66 0.64 15.87 16 9 O -0.57 -21.75 11.62 -3.05 -0.04 -21.79 16 10 N -0.62 -18.26 3.33 -812.49 -2.71 -20.96 16 11 C 0.11 2.22 6.50 86.77 0.56 2.78 16 12 C -0.11 -2.98 6.12 31.56 0.19 -2.78 16 13 C 0.09 3.28 0.83 -10.16 -0.01 3.27 16 14 C 0.11 4.09 5.85 86.56 0.51 4.59 16 15 C 0.17 8.07 4.07 86.01 0.35 8.42 16 16 N -0.61 -30.86 2.99 -698.84 -2.09 -32.95 16 17 C -0.26 -14.53 9.67 84.03 0.81 -13.71 16 18 H 0.06 3.50 7.88 -2.91 -0.02 3.48 16 19 C -0.04 -2.40 4.96 84.86 0.42 -1.98 16 20 N -0.93 -53.54 11.12 21.65 0.24 -53.30 16 21 Si 0.96 45.19 29.59 68.60 2.03 47.22 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 C 0.11 4.44 6.71 86.34 0.58 5.02 16 26 C 0.05 1.89 6.78 72.08 0.49 2.38 16 27 O -0.37 -13.45 10.28 -148.95 -1.53 -14.98 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 1.31 7.68 -2.39 -0.02 1.29 16 34 H 0.05 1.70 5.51 -2.39 -0.01 1.69 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.05 1.70 5.51 -2.39 -0.01 1.69 16 38 H 0.05 1.31 7.68 -2.39 -0.02 1.29 16 39 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.09 2.44 7.99 -2.39 -0.02 2.42 16 45 H 0.05 2.32 6.01 -2.38 -0.01 2.30 16 46 H 0.05 2.13 7.82 -2.39 -0.02 2.11 16 47 H 0.07 3.58 5.93 -2.38 -0.01 3.56 16 48 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 50 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.07 2.68 7.96 -2.39 -0.02 2.66 16 52 H 0.12 3.36 8.14 -2.38 -0.02 3.34 16 53 H 0.04 1.37 6.25 -2.39 -0.01 1.35 16 Total: -1.00 -71.68 401.46 2.77 -68.91 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.87 Total: 19.11 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 7.38 Total: 17.97 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -4.55 Total: -107.22 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -2.96 Total: -45.99 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -71.68 2.77 -68.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734136317.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.418 kcal (2) G-P(sol) polarization free energy of solvation -71.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds