Wall clock time and date at job start Sat Apr 11 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47152 * 2 1 4 4 C 1.52998 * 109.46757 * 179.97438 * 3 2 1 5 5 O 1.42906 * 109.46856 * 180.02562 * 4 3 2 6 6 C 1.42902 * 113.99749 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47079 * 30.00379 * 6 5 4 8 8 C 1.52997 * 109.47402 * 269.99948 * 6 5 4 9 9 C 1.50702 * 109.46544 * 149.99838 * 6 5 4 10 10 O 1.21270 * 120.00625 * 5.00124 * 9 6 5 11 11 N 1.34778 * 119.99682 * 184.99731 * 9 6 5 12 12 C 1.47486 * 125.66421 * 0.02946 * 11 9 6 13 13 C 1.55025 * 104.89720 * 155.94394 * 12 11 9 14 14 C 1.54522 * 101.53139 * 36.37672 * 13 12 11 15 15 C 1.47188 * 125.66417 * 179.97438 * 11 9 6 16 16 C 1.52512 * 110.05556 * 206.90583 * 14 13 12 17 17 N 1.47313 * 108.39797 * 287.92797 * 16 14 13 18 18 C 1.36939 * 121.06059 * 130.59582 * 17 16 14 19 19 H 1.08002 * 119.99899 * 205.76510 * 18 17 16 20 20 C 1.38809 * 120.00198 * 25.76692 * 18 17 16 21 21 N 1.31617 * 120.00028 * 16.74866 * 20 18 17 22 22 Si 1.86803 * 119.99996 * 196.74927 * 20 18 17 23 23 H 1.48498 * 109.47029 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47116 * 119.99933 * 22 20 18 25 25 H 1.48496 * 109.47000 * 240.00127 * 22 20 18 26 26 C 1.47157 * 117.87239 * 310.62028 * 17 16 14 27 27 C 1.53275 * 108.56007 * 51.10997 * 26 17 16 28 28 O 1.42068 * 110.32699 * 83.93941 * 14 13 12 29 29 H 1.08996 * 109.46819 * 299.99671 * 1 2 3 30 30 H 1.09000 * 109.46876 * 59.99600 * 1 2 3 31 31 H 1.08998 * 109.47291 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46801 * 239.99835 * 2 1 3 33 33 H 1.09000 * 109.46876 * 120.00400 * 2 1 3 34 34 H 1.09003 * 109.46674 * 60.00254 * 3 2 1 35 35 H 1.08997 * 109.47425 * 300.00502 * 3 2 1 36 36 H 1.09003 * 109.47106 * 60.00782 * 4 3 2 37 37 H 1.08997 * 109.47778 * 300.00549 * 4 3 2 38 38 H 1.08992 * 109.47264 * 180.02562 * 8 6 5 39 39 H 1.09003 * 109.46682 * 300.00162 * 8 6 5 40 40 H 1.09004 * 109.47176 * 59.99815 * 8 6 5 41 41 H 1.08998 * 110.35267 * 37.09036 * 12 11 9 42 42 H 1.09002 * 110.35306 * 274.79709 * 12 11 9 43 43 H 1.09002 * 111.01232 * 154.43666 * 13 12 11 44 44 H 1.08999 * 111.01741 * 278.31558 * 13 12 11 45 45 H 1.08995 * 109.90990 * 300.91384 * 15 11 9 46 46 H 1.08998 * 109.90663 * 61.99477 * 15 11 9 47 47 H 1.09003 * 109.67749 * 47.65219 * 16 14 13 48 48 H 1.08991 * 109.68348 * 168.19904 * 16 14 13 49 49 H 0.97002 * 120.00036 * 179.97438 * 21 20 18 50 50 H 1.09002 * 109.62386 * 291.38443 * 26 17 16 51 51 H 1.09005 * 109.77718 * 170.92234 * 26 17 16 52 52 H 1.09001 * 109.50966 * 187.19635 * 27 26 17 53 53 H 1.08997 * 109.51471 * 67.03643 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0464 2.7897 0.0012 6 6 5.4710 2.9024 0.0013 7 1 5.9034 2.0442 -0.5130 8 6 5.9794 2.9420 1.4438 9 6 5.8745 4.1690 -0.7086 10 8 5.0262 4.9476 -1.0892 11 7 7.1784 4.4366 -0.9205 12 6 8.3089 3.5815 -0.5131 13 6 9.4635 3.9625 -1.4749 14 6 9.2394 5.4825 -1.6397 15 6 7.7105 5.6302 -1.5977 16 6 9.7861 5.9489 -2.9849 17 7 11.2577 5.9238 -2.9227 18 6 11.9962 5.3208 -3.9056 19 1 12.9815 4.9386 -3.6831 20 6 11.4786 5.2008 -5.1880 21 7 10.4491 5.9350 -5.5535 22 14 12.2430 3.9974 -6.3950 23 1 13.3788 3.2970 -5.7434 24 1 11.2236 3.0024 -6.8146 25 1 12.7338 4.7357 -7.5863 26 6 11.9085 6.5670 -1.7703 27 6 11.2662 6.0317 -0.4857 28 8 9.8463 6.1900 -0.5676 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9562 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 3.9337 0.9285 -0.8892 37 1 3.9331 0.9286 0.8907 38 1 7.0659 3.0285 1.4438 39 1 5.5470 3.8004 1.9579 40 1 5.6874 2.0259 1.9572 41 1 8.0497 2.5293 -0.6301 42 1 8.5903 3.7912 0.5189 43 1 10.4334 3.7573 -1.0217 44 1 9.3631 3.4468 -2.4299 45 1 7.3152 5.6886 -2.6118 46 1 7.4367 6.5261 -1.0406 47 1 9.4406 5.2801 -3.7733 48 1 9.4445 6.9637 -3.1881 49 1 10.0876 5.8514 -6.4497 50 1 11.7694 7.6467 -1.8268 51 1 12.9736 6.3348 -1.7712 52 1 11.6458 6.5890 0.3707 53 1 11.5086 4.9753 -0.3703 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755400889.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:58 Heat of formation + Delta-G solvation = -121.515982 kcal Electronic energy + Delta-G solvation = -31268.991828 eV Core-core repulsion = 27140.760241 eV Total energy + Delta-G solvation = -4128.231587 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.74457 -40.46536 -38.89376 -37.50392 -36.26810 -35.94335 -33.55355 -33.21383 -31.97205 -30.89692 -29.80638 -29.05570 -27.56448 -25.73447 -25.06191 -24.21340 -23.54937 -22.92759 -22.05665 -20.61175 -20.32155 -18.97176 -18.43205 -17.95361 -17.37728 -17.08403 -16.85385 -16.63876 -16.27567 -16.11483 -15.79600 -15.50252 -15.25183 -15.23822 -14.81455 -14.57326 -14.42748 -14.26012 -14.18085 -13.70650 -13.63206 -13.53063 -13.27609 -13.15214 -13.05745 -12.85035 -12.70727 -12.61274 -12.45337 -12.32140 -12.29813 -12.10466 -11.95740 -11.84891 -11.81487 -11.80364 -11.53654 -11.15030 -11.01981 -10.79466 -10.53393 -10.44985 -9.79390 -8.73481 -7.89749 -5.35859 1.45558 1.47205 1.48327 1.58041 1.58306 2.47787 2.74023 2.75099 3.22531 3.32172 3.49831 3.56197 3.82717 3.90370 3.92255 3.98421 4.03302 4.12439 4.20165 4.24191 4.30261 4.38773 4.41289 4.43202 4.49113 4.52999 4.60408 4.66859 4.69181 4.71904 4.76093 4.78677 4.90690 4.91623 4.95260 5.02961 5.04588 5.07808 5.13051 5.14905 5.19931 5.24191 5.27215 5.34901 5.44476 5.50729 5.62484 6.10255 6.29032 6.37310 6.45175 7.02524 7.06216 7.75726 8.30260 9.16663 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014565 B = 0.002543 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.961581 B =11007.201044 C =12107.133604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.119 4.119 4 C 0.053 3.947 5 O -0.391 6.391 6 C 0.082 3.918 7 H 0.113 0.887 8 C -0.166 4.166 9 C 0.519 3.481 10 O -0.579 6.579 11 N -0.609 5.609 12 C 0.104 3.896 13 C -0.138 4.138 14 C 0.097 3.903 15 C 0.130 3.870 16 C 0.174 3.826 17 N -0.607 5.607 18 C -0.253 4.253 19 H 0.078 0.922 20 C -0.053 4.053 21 N -0.940 5.940 22 Si 0.966 3.034 23 H -0.260 1.260 24 H -0.291 1.291 25 H -0.298 1.298 26 C 0.101 3.899 27 C 0.053 3.947 28 O -0.382 6.382 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.068 0.932 48 H -0.012 1.012 49 H 0.249 0.751 50 H 0.011 0.989 51 H 0.076 0.924 52 H 0.120 0.880 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.798 -14.730 16.982 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.156 4.156 4 C -0.022 4.022 5 O -0.310 6.310 6 C 0.021 3.979 7 H 0.130 0.870 8 C -0.223 4.223 9 C 0.309 3.691 10 O -0.458 6.458 11 N -0.344 5.344 12 C -0.017 4.017 13 C -0.176 4.176 14 C 0.055 3.945 15 C 0.007 3.993 16 C 0.047 3.953 17 N -0.331 5.331 18 C -0.383 4.383 19 H 0.096 0.904 20 C -0.248 4.248 21 N -0.586 5.586 22 Si 0.795 3.205 23 H -0.184 1.184 24 H -0.218 1.218 25 H -0.225 1.225 26 C -0.025 4.025 27 C -0.024 4.024 28 O -0.301 6.301 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.120 0.880 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.006 0.994 49 H 0.058 0.942 50 H 0.029 0.971 51 H 0.095 0.905 52 H 0.138 0.862 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.603 -14.078 16.789 23.922 hybrid contribution 0.500 0.175 -1.735 1.814 sum -9.103 -13.903 15.053 22.422 Atomic orbital electron populations 1.21774 0.95229 1.02283 1.01834 1.21421 0.96421 0.94541 1.03002 1.21557 0.93121 0.98429 1.02540 1.22875 0.95616 0.82136 1.01609 1.88010 1.19214 1.28608 1.95184 1.21892 0.83387 0.94515 0.98058 0.86967 1.22280 1.02949 1.04268 0.92811 1.20929 0.80364 0.88698 0.79130 1.90682 1.50781 1.51296 1.53062 1.48568 1.05565 1.22784 1.57462 1.22731 0.84175 0.95561 0.99250 1.23112 0.99821 0.94385 1.00321 1.22248 0.90604 0.92782 0.88854 1.21524 0.91715 0.88921 0.97167 1.20908 0.83989 0.97184 0.93176 1.44326 1.01050 1.64580 1.23167 1.19566 1.00805 1.29435 0.88488 0.90419 1.25803 0.99635 1.00866 0.98487 1.70197 1.28538 1.41037 1.18825 0.85217 0.78046 0.78612 0.78655 1.18380 1.21832 1.22542 1.21823 0.97570 0.94819 0.88253 1.23210 0.79731 1.01560 0.97940 1.87684 1.21686 1.71640 1.49135 0.92569 0.93229 0.91545 0.91445 0.90491 0.91506 0.92818 0.92553 0.90655 0.89008 0.92806 0.88512 0.87301 0.88555 0.87961 0.91163 0.92042 0.91645 0.91387 0.99393 0.94205 0.97116 0.90513 0.86235 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.12 -1.35 5.93 30.60 0.18 -1.17 16 3 C -0.12 -1.98 5.58 30.59 0.17 -1.81 16 4 C 0.05 0.92 5.75 71.98 0.41 1.33 16 5 O -0.39 -10.22 9.53 -129.99 -1.24 -11.46 16 6 C 0.08 1.85 2.49 29.85 0.07 1.93 16 7 H 0.11 1.86 7.26 -2.39 -0.02 1.85 16 8 C -0.17 -2.67 9.39 71.98 0.68 -1.99 16 9 C 0.52 16.98 7.24 87.66 0.63 17.62 16 10 O -0.58 -25.01 16.84 15.99 0.27 -24.74 16 11 N -0.61 -18.67 3.33 -812.30 -2.71 -21.38 16 12 C 0.10 2.33 5.35 86.88 0.46 2.80 16 13 C -0.14 -4.13 5.91 31.81 0.19 -3.95 16 14 C 0.10 3.58 0.83 -10.22 -0.01 3.57 16 15 C 0.13 4.84 6.24 86.47 0.54 5.38 16 16 C 0.17 8.31 3.95 86.06 0.34 8.65 16 17 N -0.61 -28.97 2.95 -698.65 -2.06 -31.03 16 18 C -0.25 -13.09 9.66 84.03 0.81 -12.28 16 19 H 0.08 3.83 7.88 -2.91 -0.02 3.81 16 20 C -0.05 -2.85 4.96 84.86 0.42 -2.43 16 21 N -0.94 -55.06 11.12 21.65 0.24 -54.82 16 22 Si 0.97 43.28 29.59 68.60 2.03 45.31 16 23 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 25 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 26 C 0.10 3.89 6.71 86.35 0.58 4.47 16 27 C 0.05 1.59 6.76 72.07 0.49 2.07 16 28 O -0.38 -13.45 10.23 -148.97 -1.52 -14.97 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 0.88 8.08 -2.39 -0.02 0.86 16 37 H 0.08 0.90 7.87 -2.39 -0.02 0.88 16 38 H 0.09 1.20 5.56 -2.39 -0.01 1.19 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.10 1.03 7.87 -2.38 -0.02 1.01 16 41 H 0.11 1.70 7.33 -2.39 -0.02 1.68 16 42 H 0.10 1.78 7.16 -2.39 -0.02 1.77 16 43 H 0.10 2.81 5.98 -2.39 -0.01 2.80 16 44 H 0.07 2.36 7.86 -2.39 -0.02 2.34 16 45 H 0.06 2.55 7.79 -2.39 -0.02 2.53 16 46 H 0.07 2.53 8.07 -2.39 -0.02 2.52 16 47 H 0.07 3.64 5.96 -2.39 -0.01 3.63 16 48 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 49 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 50 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 51 H 0.08 2.72 7.96 -2.38 -0.02 2.70 16 52 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 53 H 0.07 1.81 6.13 -2.39 -0.01 1.80 16 Total: -1.00 -74.11 408.21 2.57 -71.54 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.87 Total: 18.38 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: 6.69 Total: 23.18 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -4.52 Total: -107.22 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -2.49 Total: -51.18 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -74.11 2.57 -71.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755400889.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.978 kcal (2) G-P(sol) polarization free energy of solvation -74.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds