Wall clock time and date at job start Sat Apr 11 2020 06:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46557 * 2 1 4 4 C 1.50701 * 109.46837 * 179.97438 * 3 2 1 5 5 O 1.21287 * 120.00107 * 0.02562 * 4 3 2 6 6 N 1.34783 * 120.00031 * 179.97438 * 4 3 2 7 7 C 1.46925 * 120.62672 * 0.02562 * 6 4 3 8 8 C 1.53198 * 108.77197 * 233.62809 * 7 6 4 9 9 C 1.53035 * 109.31217 * 305.36797 * 8 7 6 10 10 C 1.53039 * 109.53976 * 61.36493 * 9 8 7 11 11 H 1.09003 * 109.49649 * 58.62131 * 10 9 8 12 12 C 1.50701 * 109.49995 * 178.67806 * 10 9 8 13 13 O 1.21289 * 119.99649 * 87.44028 * 12 10 9 14 14 N 1.34775 * 120.00496 * 267.44499 * 12 10 9 15 15 C 1.46499 * 119.99782 * 3.94400 * 14 12 10 16 16 C 1.50700 * 109.47326 * 84.34085 * 15 14 12 17 17 H 1.08007 * 119.99719 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00349 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99864 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00016 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47351 * 59.99835 * 20 18 16 22 22 H 1.48500 * 109.46812 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47090 * 299.99282 * 20 18 16 24 24 C 1.46499 * 120.00129 * 183.94250 * 14 12 10 25 25 C 1.52998 * 109.47295 * 264.71172 * 24 14 12 26 26 O 1.42900 * 109.47064 * 64.99874 * 25 24 14 27 27 C 1.42902 * 113.99937 * 179.97438 * 26 25 24 28 28 C 1.46926 * 120.63089 * 180.02562 * 6 4 3 29 29 H 1.08996 * 109.47216 * 300.00056 * 1 2 3 30 30 H 1.08998 * 109.47118 * 60.00215 * 1 2 3 31 31 H 1.09006 * 109.46875 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47343 * 240.00476 * 2 1 3 33 33 H 1.08997 * 109.47531 * 119.99132 * 2 1 3 34 34 H 1.08996 * 109.47404 * 60.00058 * 3 2 1 35 35 H 1.08998 * 109.47230 * 299.99716 * 3 2 1 36 36 H 1.09003 * 109.58313 * 113.84563 * 7 6 4 37 37 H 1.09000 * 109.70580 * 353.48878 * 7 6 4 38 38 H 1.08998 * 109.49379 * 185.41765 * 8 7 6 39 39 H 1.09001 * 109.49455 * 65.32061 * 8 7 6 40 40 H 1.08998 * 109.46422 * 301.34392 * 9 8 7 41 41 H 1.09002 * 109.44735 * 181.37823 * 9 8 7 42 42 H 1.08999 * 109.47453 * 204.33679 * 15 14 12 43 43 H 1.08995 * 109.47218 * 324.34237 * 15 14 12 44 44 H 0.97002 * 120.00378 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.47280 * 24.71426 * 24 14 12 46 46 H 1.09004 * 109.47058 * 144.71130 * 24 14 12 47 47 H 1.09003 * 109.47482 * 184.99977 * 25 24 14 48 48 H 1.08995 * 109.47289 * 305.00155 * 25 24 14 49 49 H 1.08993 * 109.47377 * 300.00409 * 27 26 25 50 50 H 1.09003 * 109.46756 * 60.00572 * 27 26 25 51 51 H 1.09002 * 109.46769 * 180.02562 * 27 26 25 52 52 H 1.09005 * 109.58582 * 6.58605 * 28 6 4 53 53 H 1.08994 * 109.58311 * 246.16129 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4427 0.0006 5 8 4.1534 0.3923 0.0006 6 7 4.2208 2.6100 0.0002 7 6 3.5000 3.8903 -0.0003 8 6 4.0078 4.7414 -1.1685 9 6 5.5292 4.8765 -1.0725 10 6 6.1730 3.4914 -1.1683 11 1 5.8893 3.0227 -2.1107 12 6 7.6725 3.6284 -1.1064 13 8 8.2364 3.6414 -0.0326 14 7 8.3871 3.7365 -2.2440 15 6 7.7005 3.8078 -3.5362 16 6 7.2930 5.2325 -3.8105 17 1 7.5222 6.0073 -3.0938 18 6 6.6276 5.5470 -4.9765 19 7 6.3482 4.6035 -5.8490 20 14 6.1232 7.3131 -5.3169 21 1 7.3316 8.1755 -5.3496 22 1 5.4272 7.3854 -6.6266 23 1 5.2091 7.7822 -4.2446 24 6 9.8503 3.7826 -2.1884 25 6 10.3153 5.2402 -2.1964 26 8 9.8710 5.8885 -1.0030 27 6 10.2551 7.2618 -0.9100 28 6 5.6899 2.6262 0.0003 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 3.6826 4.4127 0.9388 37 1 2.4313 3.7104 -0.1166 38 1 3.5512 5.7302 -1.1236 39 1 3.7439 4.2607 -2.1105 40 1 5.7937 5.3347 -0.1196 41 1 5.8902 5.5020 -1.8889 42 1 8.3711 3.4638 -4.3235 43 1 6.8137 3.1746 -3.5119 44 1 5.8804 4.8247 -6.6695 45 1 10.1948 3.2964 -1.2758 46 1 10.2633 3.2647 -3.0541 47 1 11.4037 5.2742 -2.2447 48 1 9.8970 5.7503 -3.0641 49 1 11.3422 7.3373 -0.9314 50 1 9.8358 7.8140 -1.7511 51 1 9.8804 7.6814 0.0237 52 1 6.0666 1.6101 -0.1171 53 1 6.0506 3.0456 0.9394 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111661821.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:05 Heat of formation + Delta-G solvation = -150.213727 kcal Electronic energy + Delta-G solvation = -32172.710981 eV Core-core repulsion = 28043.234966 eV Total energy + Delta-G solvation = -4129.476015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.60374 -40.59430 -38.75414 -38.02106 -36.66391 -35.34484 -34.56103 -33.96299 -32.39493 -31.06137 -29.05255 -28.88193 -27.19565 -26.15581 -25.36256 -24.77964 -23.35240 -22.86808 -21.81186 -19.89891 -19.76259 -18.55668 -18.29973 -17.93586 -17.50656 -16.98114 -16.84530 -16.73742 -16.38818 -16.31056 -15.95956 -15.43359 -15.28001 -15.16405 -14.95265 -14.56518 -14.30319 -14.11386 -13.92811 -13.74083 -13.66901 -13.50596 -13.36077 -13.24578 -12.87398 -12.85538 -12.71256 -12.61288 -12.54746 -12.40424 -12.11791 -12.06079 -11.88468 -11.84945 -11.74544 -11.64241 -11.60086 -11.42392 -10.86157 -10.62102 -10.54442 -10.34670 -9.64922 -9.40690 -8.14791 -6.26077 1.42941 1.44849 1.51410 1.60446 1.82787 1.94672 2.37742 2.50028 3.00743 3.15536 3.53406 3.71039 3.86551 3.95282 4.02152 4.09932 4.14123 4.15575 4.23641 4.31015 4.32811 4.44775 4.50739 4.53939 4.54630 4.60142 4.63479 4.68907 4.72241 4.73818 4.77864 4.80913 4.83942 4.87700 4.90528 4.96634 5.04876 5.11677 5.25891 5.26184 5.30571 5.41960 5.44584 5.44906 5.51909 5.70969 5.88776 6.12128 6.37697 6.44154 6.61257 6.87434 7.16460 7.37190 7.49282 8.91071 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010653 B = 0.003846 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.782801 B = 7279.448942 C = 8627.558335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.130 4.130 4 C 0.503 3.497 5 O -0.594 6.594 6 N -0.610 5.610 7 C 0.105 3.895 8 C -0.126 4.126 9 C -0.104 4.104 10 C -0.103 4.103 11 H 0.077 0.923 12 C 0.526 3.474 13 O -0.581 6.581 14 N -0.597 5.597 15 C 0.253 3.747 16 C -0.520 4.520 17 H 0.055 0.945 18 C 0.027 3.973 19 N -0.921 5.921 20 Si 0.944 3.056 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.264 1.264 24 C 0.115 3.885 25 C 0.051 3.949 26 O -0.401 6.401 27 C 0.030 3.970 28 C 0.139 3.861 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.021 0.979 43 H 0.020 0.980 44 H 0.265 0.735 45 H 0.076 0.924 46 H 0.102 0.898 47 H 0.074 0.926 48 H 0.047 0.953 49 H 0.055 0.945 50 H 0.034 0.966 51 H 0.088 0.912 52 H 0.062 0.938 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.843 1.658 9.240 12.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.169 4.169 4 C 0.294 3.706 5 O -0.475 6.475 6 N -0.342 5.342 7 C -0.016 4.016 8 C -0.164 4.164 9 C -0.142 4.142 10 C -0.125 4.125 11 H 0.095 0.905 12 C 0.314 3.686 13 O -0.462 6.462 14 N -0.327 5.327 15 C 0.132 3.868 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.173 4.173 19 N -0.561 5.561 20 Si 0.770 3.230 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.189 1.189 24 C -0.008 4.008 25 C -0.027 4.027 26 O -0.320 6.320 27 C -0.066 4.066 28 C 0.015 3.985 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.106 0.894 37 H 0.140 0.860 38 H 0.120 0.880 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.039 0.961 43 H 0.037 0.963 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.120 0.880 47 H 0.092 0.908 48 H 0.065 0.935 49 H 0.074 0.926 50 H 0.052 0.948 51 H 0.106 0.894 52 H 0.081 0.919 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.424 0.990 9.737 12.285 hybrid contribution 0.569 0.909 -1.108 1.542 sum -6.856 1.899 8.630 11.184 Atomic orbital electron populations 1.21744 0.93188 1.02433 1.02885 1.21275 0.97057 0.94722 1.01809 1.21822 0.88066 1.00456 1.06597 1.21679 0.92222 0.82311 0.74416 1.90660 1.71799 1.32756 1.52311 1.48280 1.05942 1.07458 1.72487 1.22099 0.97895 0.82297 0.99279 1.21872 0.94149 1.01644 0.98741 1.21441 0.96400 0.93867 1.02533 1.21440 0.91610 0.99581 0.99891 0.90471 1.20491 0.89714 0.75085 0.83303 1.90573 1.73101 1.53126 1.29435 1.48114 1.06471 1.70426 1.07733 1.19114 0.91925 0.96673 0.79072 1.21435 1.36768 0.93712 1.03915 0.92666 1.25526 0.95689 1.00391 0.95705 1.70011 1.41517 1.34165 1.10398 0.85812 0.78653 0.80951 0.77565 1.20192 1.21242 1.18878 1.21535 0.80584 0.95605 1.03037 1.22949 0.98325 0.93876 0.87503 1.88011 1.78590 1.24519 1.40905 1.22802 0.99731 0.82185 1.01923 1.21111 0.80551 0.99325 0.97471 0.91195 0.91793 0.92328 0.93519 0.92757 0.85769 0.86750 0.89424 0.85950 0.88031 0.92452 0.92075 0.90953 0.96080 0.96258 0.92573 0.90572 0.88033 0.90844 0.93495 0.92637 0.94781 0.89358 0.91923 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 71.98 0.71 -1.24 16 2 C -0.11 -2.21 5.22 30.60 0.16 -2.05 16 3 C -0.13 -2.41 4.05 29.85 0.12 -2.29 16 4 C 0.50 14.93 7.70 87.66 0.67 15.60 16 5 O -0.59 -23.29 15.40 -3.05 -0.05 -23.34 16 6 N -0.61 -17.61 2.97 -818.82 -2.43 -20.04 16 7 C 0.11 2.16 6.34 86.36 0.55 2.71 16 8 C -0.13 -3.26 6.08 30.67 0.19 -3.08 16 9 C -0.10 -3.63 5.14 30.62 0.16 -3.47 16 10 C -0.10 -4.01 2.09 -11.45 -0.02 -4.04 16 11 H 0.08 3.34 5.89 -2.39 -0.01 3.33 16 12 C 0.53 22.96 6.42 87.66 0.56 23.52 16 13 O -0.58 -27.40 15.21 -3.00 -0.05 -27.45 16 14 N -0.60 -25.75 2.43 -826.16 -2.01 -27.76 16 15 C 0.25 11.97 5.00 85.63 0.43 12.40 16 16 C -0.52 -25.54 6.84 25.60 0.18 -25.37 16 17 H 0.06 2.80 7.30 -2.91 -0.02 2.77 16 18 C 0.03 1.35 5.46 84.66 0.46 1.82 16 19 N -0.92 -49.32 13.29 21.45 0.28 -49.03 16 20 Si 0.94 39.82 29.54 68.60 2.03 41.85 16 21 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.29 -12.05 7.11 99.48 0.71 -11.35 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 24 C 0.12 4.29 5.87 86.38 0.51 4.80 16 25 C 0.05 1.79 6.28 71.98 0.45 2.24 16 26 O -0.40 -15.38 9.97 -148.93 -1.49 -16.86 16 27 C 0.03 0.87 11.01 113.37 1.25 2.12 16 28 C 0.14 5.01 5.44 86.37 0.47 5.48 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 33 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 34 H 0.12 1.52 7.94 -2.39 -0.02 1.50 16 35 H 0.11 1.71 7.70 -2.39 -0.02 1.69 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.12 1.58 5.94 -2.39 -0.01 1.56 16 38 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.07 2.96 5.55 -2.39 -0.01 2.95 16 42 H 0.02 1.05 7.89 -2.39 -0.02 1.03 16 43 H 0.02 0.99 5.93 -2.39 -0.01 0.98 16 44 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 45 H 0.08 2.88 7.32 -2.39 -0.02 2.87 16 46 H 0.10 3.30 7.94 -2.39 -0.02 3.28 16 47 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.05 1.82 7.48 -2.39 -0.02 1.80 16 49 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 52 H 0.06 2.56 7.01 -2.38 -0.02 2.54 16 53 H 0.07 2.69 7.68 -2.39 -0.02 2.67 16 Total: -1.00 -69.31 414.62 4.01 -65.30 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.88 Total: 28.20 kcal Atomic # 6 Polarization: 22.30 SS G_CDS: 6.84 Total: 29.14 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -4.16 Total: -96.83 kcal Atomic # 8 Polarization: -66.07 SS G_CDS: -1.58 Total: -67.65 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -69.31 4.01 -65.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111661821.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.917 kcal (2) G-P(sol) polarization free energy of solvation -69.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds