Wall clock time and date at job start Sat Apr 11 2020 06:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 O 1.45194 * 109.47339 * 239.99574 * 2 1 3 6 6 C 1.34639 * 116.99841 * 60.00459 * 5 2 1 7 7 O 1.21508 * 119.99991 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00005 * 179.97438 * 6 5 2 9 9 C 1.46505 * 119.99900 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47408 * 325.00386 * 9 8 6 11 11 C 1.53001 * 109.47153 * 85.00921 * 9 8 6 12 12 C 1.53019 * 109.46678 * 195.93947 * 11 9 8 13 13 C 1.52986 * 109.45903 * 284.04915 * 12 11 9 14 14 C 1.52986 * 109.50543 * 315.99277 * 13 12 11 15 15 C 1.52999 * 109.47488 * 112.94018 * 14 13 12 16 16 C 1.53012 * 109.43363 * 284.03848 * 15 14 13 17 17 C 1.52986 * 109.47811 * 75.95650 * 16 15 14 18 18 H 1.09000 * 109.46733 * 7.08143 * 17 16 15 19 19 C 1.50697 * 109.46650 * 127.06174 * 17 16 15 20 20 O 1.21294 * 120.00091 * 120.02541 * 19 17 16 21 21 N 1.34775 * 119.99912 * 300.03138 * 19 17 16 22 22 C 1.37098 * 120.00097 * 179.97438 * 21 19 17 23 23 H 1.07998 * 119.99893 * 0.02562 * 22 21 19 24 24 C 1.38946 * 120.00080 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00268 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99958 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47157 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47133 * 120.00435 * 26 24 22 29 29 H 1.48506 * 109.47252 * 240.00369 * 26 24 22 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 36 36 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 37 37 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 38 38 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 39 39 H 0.97001 * 119.99769 * 0.02562 * 8 6 5 40 40 H 1.09000 * 109.47639 * 315.94306 * 11 9 8 41 41 H 1.09005 * 109.47495 * 75.94209 * 11 9 8 42 42 H 1.09001 * 109.47383 * 164.05133 * 12 11 9 43 43 H 1.08998 * 109.47201 * 44.05041 * 12 11 9 44 44 H 1.09003 * 109.46310 * 195.97883 * 13 12 11 45 45 H 1.09000 * 109.46625 * 76.00582 * 13 12 11 46 46 H 1.08994 * 109.46908 * 352.93471 * 14 13 12 47 47 H 1.08997 * 109.46601 * 232.93946 * 14 13 12 48 48 H 1.08999 * 109.48110 * 164.05422 * 15 14 13 49 49 H 1.09004 * 109.48215 * 44.02713 * 15 14 13 50 50 H 1.08995 * 109.46697 * 315.95677 * 16 15 14 51 51 H 1.08997 * 109.47054 * 195.95722 * 16 15 14 52 52 H 0.96997 * 119.99943 * 0.02562 * 21 19 17 53 53 H 0.96999 * 120.00254 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 2.0140 -0.6845 -1.1854 6 6 1.6523 -0.1729 -2.3772 7 8 0.9510 0.8182 -2.4252 8 7 2.0682 -0.7601 -3.5168 9 6 1.6742 -0.2038 -4.8136 10 1 0.6648 0.2017 -4.7434 11 6 2.6455 0.9111 -5.2066 12 6 2.0321 1.7493 -6.3303 13 6 2.1277 0.9808 -7.6497 14 6 3.5174 0.3538 -7.7760 15 6 3.3975 -1.1701 -7.7092 16 6 3.1593 -1.5989 -6.2598 17 6 1.7082 -1.3067 -5.8733 18 1 1.1561 -0.9807 -6.7547 19 6 1.0750 -2.5564 -5.3180 20 8 0.6395 -2.5641 -4.1860 21 7 0.9928 -3.6656 -6.0793 22 6 0.4173 -4.8027 -5.5740 23 1 0.0294 -4.8095 -4.5661 24 6 0.3320 -5.9460 -6.3589 25 7 0.8035 -5.9376 -7.5855 26 14 -0.4529 -7.4951 -5.6707 27 1 -0.9018 -7.2455 -4.2774 28 1 -1.6210 -7.8716 -6.5068 29 1 0.5398 -8.5996 -5.6809 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 -1.7488 1.2493 37 1 3.1300 -0.7207 1.2495 38 1 1.6766 -0.2073 2.1393 39 1 2.6277 -1.5516 -3.4784 40 1 2.8378 1.5470 -4.3424 41 1 3.5823 0.4724 -5.5504 42 1 2.5737 2.6911 -6.4182 43 1 0.9856 1.9518 -6.1027 44 1 1.9610 1.6652 -8.4815 45 1 1.3719 0.1957 -7.6684 46 1 4.1498 0.7046 -6.9605 47 1 3.9606 0.6419 -8.7292 48 1 4.3184 -1.6236 -8.0757 49 1 2.5607 -1.4963 -8.3269 50 1 3.8290 -1.0447 -5.6023 51 1 3.3538 -2.6667 -6.1603 52 1 1.3415 -3.6595 -6.9844 53 1 0.7444 -6.7358 -8.1333 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135221536.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:26 Heat of formation + Delta-G solvation = -140.377568 kcal Electronic energy + Delta-G solvation = -32644.542958 eV Core-core repulsion = 28515.493471 eV Total energy + Delta-G solvation = -4129.049487 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -42.03434 -41.08114 -39.12601 -38.04240 -36.18133 -35.45313 -34.82361 -34.04586 -33.03195 -31.95754 -28.39625 -28.33543 -28.27391 -26.85114 -26.40719 -23.72701 -22.90589 -22.53093 -21.05045 -20.57557 -20.20217 -19.82809 -19.14730 -17.89791 -17.41643 -17.04674 -16.89998 -16.32775 -16.12731 -15.84568 -15.59509 -15.38000 -15.32165 -15.15994 -14.83410 -14.53863 -14.37510 -14.15694 -13.92994 -13.56795 -13.35781 -13.30405 -13.12576 -12.95729 -12.86021 -12.82607 -12.61623 -12.53019 -12.41266 -12.26818 -12.21834 -12.12969 -12.11506 -11.93904 -11.63381 -11.50440 -11.31889 -11.27060 -11.11365 -10.96772 -10.83599 -10.29718 -9.99340 -9.68968 -8.46068 -5.93428 1.34107 1.34450 1.40155 1.53222 1.97924 2.06338 2.28641 3.11395 3.20130 3.31536 3.61703 3.77310 3.79566 3.83556 3.98115 4.04332 4.08386 4.20051 4.23612 4.27207 4.32093 4.50486 4.55535 4.60816 4.62817 4.69402 4.76805 4.80069 4.81378 4.85431 4.88825 4.96454 4.98847 5.03849 5.07325 5.09837 5.22666 5.29919 5.31891 5.35604 5.37137 5.40075 5.42502 5.46206 5.55261 5.59521 5.69321 5.73130 6.00790 6.57144 6.61137 7.14147 7.50984 7.58776 8.14344 8.71150 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008281 B = 0.004502 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.271639 B = 6218.164618 C = 9042.506762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.121 3.879 3 C -0.173 4.173 4 C -0.135 4.135 5 O -0.379 6.379 6 C 0.651 3.349 7 O -0.600 6.600 8 N -0.674 5.674 9 C 0.194 3.806 10 H 0.057 0.943 11 C -0.136 4.136 12 C -0.111 4.111 13 C -0.131 4.131 14 C -0.121 4.121 15 C -0.116 4.116 16 C -0.115 4.115 17 C -0.102 4.102 18 H 0.120 0.880 19 C 0.440 3.560 20 O -0.619 6.619 21 N -0.567 5.567 22 C -0.330 4.330 23 H 0.075 0.925 24 C -0.009 4.009 25 N -0.916 5.916 26 Si 0.986 3.014 27 H -0.277 1.277 28 H -0.273 1.273 29 H -0.270 1.270 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.402 0.598 40 H 0.056 0.944 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.059 0.941 50 H 0.091 0.909 51 H 0.050 0.950 52 H 0.396 0.604 53 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.329 14.578 4.744 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.085 3.915 3 C -0.230 4.230 4 C -0.192 4.192 5 O -0.294 6.294 6 C 0.405 3.595 7 O -0.492 6.492 8 N -0.330 5.330 9 C 0.090 3.910 10 H 0.076 0.924 11 C -0.174 4.174 12 C -0.149 4.149 13 C -0.168 4.168 14 C -0.158 4.158 15 C -0.153 4.153 16 C -0.153 4.153 17 C -0.124 4.124 18 H 0.137 0.863 19 C 0.227 3.773 20 O -0.506 6.506 21 N -0.203 5.203 22 C -0.459 4.459 23 H 0.093 0.907 24 C -0.209 4.209 25 N -0.557 5.557 26 Si 0.811 3.189 27 H -0.202 1.202 28 H -0.198 1.198 29 H -0.195 1.195 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.126 0.874 39 H 0.236 0.764 40 H 0.075 0.925 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.098 0.902 47 H 0.094 0.906 48 H 0.093 0.907 49 H 0.078 0.922 50 H 0.109 0.891 51 H 0.069 0.931 52 H 0.230 0.770 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.688 14.892 5.396 17.607 hybrid contribution -0.611 -1.561 -0.195 1.688 sum 7.077 13.331 5.201 15.964 Atomic orbital electron populations 1.22452 0.94881 1.02043 1.04173 1.22409 0.94121 0.93222 0.81783 1.22422 1.01642 0.94537 1.04397 1.21877 1.02511 1.00778 0.93993 1.86313 1.71783 1.57058 1.14221 1.18101 0.78443 0.81456 0.81520 1.90801 1.42462 1.28556 1.87397 1.44575 1.53850 1.31634 1.02903 1.20738 0.98587 0.92475 0.79172 0.92448 1.22439 0.99928 0.96019 0.99021 1.21518 1.00730 0.98676 0.93939 1.21902 0.97800 0.99784 0.97307 1.21795 0.97097 0.93920 1.02959 1.21711 1.02427 0.96862 0.94324 1.21872 0.93096 1.01321 0.99003 1.21871 0.99120 0.91896 0.99467 0.86282 1.20826 0.84198 0.85754 0.86507 1.90555 1.53999 1.85108 1.20921 1.41908 1.53018 1.09965 1.15433 1.19637 1.36465 0.89961 0.99871 0.90691 1.25917 0.97752 1.01618 0.95610 1.69665 1.46426 1.31187 1.08469 0.84968 0.78177 0.77769 0.78008 1.20215 1.19787 1.19518 0.93639 0.92336 0.88499 0.88814 0.91652 0.91896 0.92357 0.90866 0.87436 0.76385 0.92488 0.87693 0.89963 0.92925 0.90644 0.92426 0.90199 0.90622 0.90674 0.92181 0.89074 0.93118 0.77017 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.20 8.37 71.98 0.60 -4.59 16 2 C 0.12 3.35 1.13 -10.79 -0.01 3.34 16 3 C -0.17 -4.14 8.37 71.98 0.60 -3.53 16 4 C -0.13 -2.74 8.85 71.98 0.64 -2.10 16 5 O -0.38 -13.49 9.94 -55.48 -0.55 -14.04 16 6 C 0.65 25.05 7.95 129.79 1.03 26.08 16 7 O -0.60 -24.29 11.54 19.82 0.23 -24.06 16 8 N -0.67 -24.54 3.15 -570.12 -1.79 -26.33 16 9 C 0.19 6.36 1.65 44.99 0.07 6.43 16 10 H 0.06 2.22 7.26 -2.39 -0.02 2.20 16 11 C -0.14 -3.32 4.91 30.60 0.15 -3.17 16 12 C -0.11 -2.28 5.71 30.60 0.17 -2.10 16 13 C -0.13 -2.47 5.48 30.58 0.17 -2.30 16 14 C -0.12 -2.07 5.47 30.59 0.17 -1.90 16 15 C -0.12 -2.50 5.59 30.60 0.17 -2.33 16 16 C -0.12 -3.12 4.81 30.59 0.15 -2.97 16 17 C -0.10 -3.38 1.87 -11.55 -0.02 -3.40 16 18 H 0.12 3.69 4.69 -2.39 -0.01 3.68 16 19 C 0.44 20.24 6.48 87.66 0.57 20.81 16 20 O -0.62 -33.28 13.75 -3.07 -0.04 -33.32 16 21 N -0.57 -28.36 4.93 -306.99 -1.51 -29.87 16 22 C -0.33 -18.53 9.68 84.04 0.81 -17.72 16 23 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 24 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 25 N -0.92 -48.75 13.05 21.66 0.28 -48.47 16 26 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 28 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 29 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 2.07 5.88 -2.39 -0.01 2.06 16 32 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.86 5.88 -2.39 -0.01 1.85 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.40 14.86 7.83 -92.71 -0.73 14.13 16 40 H 0.06 1.51 8.06 -2.39 -0.02 1.49 16 41 H 0.11 2.19 2.83 -2.38 -0.01 2.19 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.05 1.22 7.82 -2.39 -0.02 1.20 16 44 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.06 1.28 4.69 -2.39 -0.01 1.27 16 46 H 0.08 1.27 5.47 -2.39 -0.01 1.26 16 47 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.06 1.42 7.47 -2.39 -0.02 1.41 16 50 H 0.09 2.15 5.47 -2.39 -0.01 2.14 16 51 H 0.05 1.62 7.35 -2.39 -0.02 1.61 16 52 H 0.40 18.93 7.78 -92.71 -0.72 18.21 16 53 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -69.32 392.58 3.88 -65.45 By element: Atomic # 1 Polarization: 55.49 SS G_CDS: -0.51 Total: 54.98 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 5.74 Total: 10.54 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -3.02 Total: -104.67 kcal Atomic # 8 Polarization: -71.05 SS G_CDS: -0.36 Total: -71.42 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -69.32 3.88 -65.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135221536.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.931 kcal (2) G-P(sol) polarization free energy of solvation -69.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds