Wall clock time and date at job start Sat Apr 11 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99824 * 2 1 4 4 C 1.50707 * 109.46985 * 269.99997 * 3 2 1 5 5 H 1.07992 * 119.99898 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99818 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00079 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99659 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47338 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46856 * 120.00188 * 8 6 4 11 11 H 1.48494 * 109.47286 * 239.99904 * 8 6 4 12 12 C 1.34770 * 120.00164 * 179.97438 * 2 1 3 13 13 O 1.21278 * 120.00113 * 174.63689 * 12 2 1 14 14 C 1.50701 * 119.99910 * 354.64824 * 12 2 1 15 15 C 1.53008 * 110.43167 * 294.81895 * 14 12 2 16 16 N 1.46500 * 109.47198 * 294.02917 * 15 14 12 17 17 C 1.34771 * 120.00060 * 185.97514 * 16 15 14 18 18 O 1.21513 * 119.99890 * 359.97438 * 17 16 15 19 19 O 1.34639 * 120.00091 * 179.97438 * 17 16 15 20 20 C 1.45199 * 116.99896 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.47382 * 59.99974 * 20 19 17 22 22 C 1.53005 * 109.47096 * 180.02562 * 20 19 17 23 23 C 1.53006 * 109.47082 * 299.99915 * 20 19 17 24 24 C 1.54893 * 110.48796 * 172.13924 * 14 12 2 25 25 C 1.54890 * 102.74597 * 279.26295 * 24 14 12 26 26 C 1.54264 * 104.19535 * 322.05334 * 25 24 14 27 27 C 1.53879 * 106.59998 * 23.61536 * 26 25 24 28 28 H 1.09000 * 109.46890 * 84.82036 * 1 2 3 29 29 H 1.08997 * 109.47117 * 204.82034 * 1 2 3 30 30 H 1.09001 * 109.47587 * 324.82382 * 1 2 3 31 31 H 1.09002 * 109.47207 * 149.99676 * 3 2 1 32 32 H 1.08998 * 109.47391 * 29.99382 * 3 2 1 33 33 H 0.96996 * 119.99604 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47067 * 54.03103 * 15 14 12 35 35 H 1.09001 * 109.46648 * 174.02943 * 15 14 12 36 36 H 0.97006 * 120.00042 * 5.96966 * 16 15 14 37 37 H 1.09001 * 109.47027 * 59.99686 * 21 20 19 38 38 H 1.08995 * 109.47427 * 180.02562 * 21 20 19 39 39 H 1.09006 * 109.46970 * 300.00484 * 21 20 19 40 40 H 1.08998 * 109.47073 * 59.99376 * 22 20 19 41 41 H 1.08995 * 109.47027 * 180.02562 * 22 20 19 42 42 H 1.09001 * 109.46813 * 300.00008 * 22 20 19 43 43 H 1.09001 * 109.46813 * 60.00320 * 23 20 19 44 44 H 1.09002 * 109.46558 * 180.02562 * 23 20 19 45 45 H 1.09000 * 109.47150 * 299.99761 * 23 20 19 46 46 H 1.09005 * 110.75272 * 37.57215 * 24 14 12 47 47 H 1.09001 * 110.75712 * 160.94641 * 24 14 12 48 48 H 1.08999 * 110.48728 * 203.37987 * 25 24 14 49 49 H 1.08998 * 110.49128 * 80.73290 * 25 24 14 50 50 H 1.08999 * 110.03416 * 264.32872 * 26 25 24 51 51 H 1.09007 * 110.03396 * 142.89250 * 26 25 24 52 52 H 1.09001 * 110.02985 * 240.71961 * 27 26 25 53 53 H 1.09001 * 110.03634 * 119.28109 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.5542 3.6177 -0.6732 8 14 3.4388 3.4163 -3.4340 9 1 2.8606 2.4164 -4.3674 10 1 2.8017 4.7373 -3.6677 11 1 4.9013 3.5241 -3.6671 12 6 2.1389 -1.1671 0.0005 13 8 3.3477 -1.1695 -0.0976 14 6 1.3903 -2.4693 0.1228 15 6 0.7101 -2.5680 1.4898 16 7 1.7301 -2.6432 2.5386 17 6 1.3662 -2.8574 3.8185 18 8 0.1919 -2.9876 4.1026 19 8 2.3037 -2.9270 4.7823 20 6 1.8391 -3.1592 6.1382 21 6 1.0875 -4.4905 6.1989 22 6 3.0384 -3.2064 7.0872 23 6 0.9018 -2.0248 6.5575 24 6 2.3471 -3.6674 -0.0974 25 6 2.4477 -3.7450 -1.6411 26 6 1.0226 -3.4138 -2.1303 27 6 0.3503 -2.6027 -1.0087 28 1 -0.3633 0.0928 -1.0235 29 1 -0.3633 -0.9327 0.4314 30 1 -0.3634 0.8400 0.5920 31 1 3.1499 1.1385 0.5139 32 1 1.6084 2.0284 0.5137 33 1 4.0316 4.4432 -0.8505 34 1 0.0880 -1.6876 1.6505 35 1 0.0886 -3.4629 1.5225 36 1 2.6675 -2.5390 2.3119 37 1 1.7552 -5.2986 5.9002 38 1 0.7383 -4.6646 7.2166 39 1 0.2331 -4.4565 5.5228 40 1 3.5735 -2.2578 7.0439 41 1 2.6896 -3.3811 8.1050 42 1 3.7064 -4.0143 6.7887 43 1 0.0475 -1.9909 5.8815 44 1 0.5535 -2.1990 7.5756 45 1 1.4373 -1.0764 6.5144 46 1 3.3237 -3.4680 0.3438 47 1 1.9184 -4.5838 0.3083 48 1 2.7350 -4.7486 -1.9547 49 1 3.1598 -3.0092 -2.0146 50 1 0.4665 -4.3338 -2.3106 51 1 1.0697 -2.8204 -3.0434 52 1 -0.5320 -3.1291 -0.6447 53 1 0.0712 -1.6156 -1.3775 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156912153.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:31 Heat of formation + Delta-G solvation = -141.504404 kcal Electronic energy + Delta-G solvation = -32160.389306 eV Core-core repulsion = 28031.290956 eV Total energy + Delta-G solvation = -4129.098350 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -42.12084 -41.46418 -38.64743 -37.94522 -36.72927 -35.77992 -34.89302 -34.68962 -31.58711 -29.91321 -29.21898 -28.33236 -28.28141 -27.54274 -26.22466 -25.20948 -23.20973 -22.30429 -21.56121 -20.87622 -19.64665 -19.16711 -18.70770 -17.94489 -17.44158 -17.28501 -17.13465 -16.64126 -16.30531 -15.97036 -15.85748 -15.58867 -15.42563 -15.11208 -14.77195 -14.42657 -14.34072 -14.17677 -13.85326 -13.66146 -13.44573 -13.33329 -13.16976 -12.99410 -12.90225 -12.87896 -12.84687 -12.58540 -12.47759 -12.38529 -12.33318 -12.25939 -12.19095 -11.91581 -11.86626 -11.83017 -11.68986 -11.37004 -11.25626 -11.10263 -10.66391 -10.51182 -10.14014 -9.42692 -8.23757 -6.38093 1.16573 1.34260 1.36484 1.48230 1.73399 1.80953 2.27673 2.42386 3.05660 3.10165 3.37444 3.47714 3.63310 3.77286 3.82408 3.85960 3.97044 4.11882 4.24991 4.41655 4.50307 4.52191 4.55399 4.60933 4.64004 4.64703 4.74556 4.76115 4.77390 4.78699 4.87132 4.89595 4.91213 4.96822 5.00128 5.05828 5.08822 5.11189 5.19757 5.21760 5.28529 5.31091 5.35673 5.37733 5.53012 5.54751 5.55440 5.81906 6.04453 6.30252 6.68514 6.78201 7.26936 7.28891 7.47060 8.83395 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011968 B = 0.003330 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.033757 B = 8406.395779 C = 9775.328345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.606 5.606 3 C 0.263 3.737 4 C -0.537 4.537 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.966 3.034 9 H -0.267 1.267 10 H -0.269 1.269 11 H -0.282 1.282 12 C 0.512 3.488 13 O -0.585 6.585 14 C -0.087 4.087 15 C 0.149 3.851 16 N -0.708 5.708 17 C 0.650 3.350 18 O -0.584 6.584 19 O -0.376 6.376 20 C 0.122 3.878 21 C -0.175 4.175 22 C -0.138 4.138 23 C -0.181 4.181 24 C -0.096 4.096 25 C -0.125 4.125 26 C -0.119 4.119 27 C -0.121 4.121 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.065 0.935 31 H -0.004 1.004 32 H 0.019 0.981 33 H 0.266 0.734 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.406 0.594 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.106 0.894 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.052 0.948 46 H 0.057 0.943 47 H 0.103 0.897 48 H 0.087 0.913 49 H 0.032 0.968 50 H 0.097 0.903 51 H 0.051 0.949 52 H 0.116 0.884 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.282 -18.997 9.709 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.336 5.336 3 C 0.141 3.859 4 C -0.575 4.575 5 H 0.070 0.930 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.791 3.209 9 H -0.191 1.191 10 H -0.194 1.194 11 H -0.208 1.208 12 C 0.300 3.700 13 O -0.465 6.465 14 C -0.091 4.091 15 C 0.028 3.972 16 N -0.367 5.367 17 C 0.404 3.596 18 O -0.475 6.475 19 O -0.291 6.291 20 C 0.086 3.914 21 C -0.233 4.233 22 C -0.195 4.195 23 C -0.238 4.238 24 C -0.134 4.134 25 C -0.163 4.163 26 C -0.156 4.156 27 C -0.158 4.158 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.014 0.986 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.241 0.759 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.122 0.878 48 H 0.106 0.894 49 H 0.051 0.949 50 H 0.116 0.884 51 H 0.070 0.930 52 H 0.135 0.865 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.165 -18.874 9.926 23.211 hybrid contribution 1.137 1.293 -0.952 1.967 sum -8.029 -17.581 8.975 21.309 Atomic orbital electron populations 1.22347 0.78709 1.03981 1.02443 1.48047 1.07947 1.06380 1.71253 1.18725 0.90822 0.80325 0.95982 1.21685 1.36514 1.06341 0.92983 0.92982 1.25851 0.95000 0.96483 1.01864 1.70058 1.39048 1.14855 1.32923 0.85388 0.77864 0.78405 0.79287 1.19104 1.19441 1.20783 1.20906 0.87487 0.85779 0.75810 1.90634 1.16582 1.87648 1.51615 1.21912 0.97999 0.92595 0.96568 1.21745 0.89049 1.04408 0.82032 1.44868 1.12095 1.75552 1.04180 1.18101 0.83366 0.76178 0.81984 1.90865 1.17730 1.56722 1.82230 1.86343 1.38972 1.85033 1.18767 1.22466 0.96344 0.96419 0.76210 1.22444 1.01200 0.95025 1.04586 1.21901 0.95885 1.03328 0.98342 1.22488 1.00157 0.97406 1.03737 1.22412 0.98236 0.95811 0.96913 1.22327 0.97300 1.01558 0.95121 1.22132 0.95355 1.00726 0.97434 1.22590 0.97501 1.02449 0.93287 0.91758 0.87745 0.91656 0.98595 0.96259 0.92460 0.90412 0.87130 0.75862 0.91859 0.88866 0.91503 0.92025 0.87533 0.91145 0.91636 0.88656 0.92934 0.92454 0.87823 0.89393 0.94932 0.88399 0.92974 0.86546 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.05 8.41 127.77 1.07 3.13 16 2 N -0.61 -25.59 2.85 -851.13 -2.43 -28.02 16 3 C 0.26 14.34 5.17 85.64 0.44 14.79 16 4 C -0.54 -31.24 9.39 25.60 0.24 -31.00 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.40 5.46 84.66 0.46 0.86 16 7 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 8 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 C 0.51 20.56 5.80 87.66 0.51 21.07 16 13 O -0.58 -29.28 15.02 -3.02 -0.05 -29.32 16 14 C -0.09 -2.33 0.25 -51.85 -0.01 -2.35 16 15 C 0.15 3.59 4.19 86.38 0.36 3.95 16 16 N -0.71 -19.67 5.11 -590.85 -3.02 -22.69 16 17 C 0.65 18.87 8.06 129.79 1.05 19.91 16 18 O -0.58 -17.87 11.87 19.80 0.24 -17.64 16 19 O -0.38 -10.37 9.94 -55.48 -0.55 -10.92 16 20 C 0.12 2.57 1.13 -10.79 -0.01 2.56 16 21 C -0.18 -3.24 8.37 71.98 0.60 -2.63 16 22 C -0.14 -2.12 8.85 71.98 0.64 -1.49 16 23 C -0.18 -3.85 8.37 71.98 0.60 -3.25 16 24 C -0.10 -2.39 4.90 31.89 0.16 -2.23 16 25 C -0.13 -3.15 6.55 31.67 0.21 -2.94 16 26 C -0.12 -2.50 6.80 31.32 0.21 -2.28 16 27 C -0.12 -2.55 4.76 31.32 0.15 -2.40 16 28 H 0.06 1.87 7.17 -2.39 -0.02 1.85 16 29 H 0.10 2.42 3.36 -2.39 -0.01 2.42 16 30 H 0.06 1.98 7.97 -2.39 -0.02 1.96 16 31 H 0.00 -0.25 7.50 -2.39 -0.02 -0.27 16 32 H 0.02 1.08 7.94 -2.39 -0.02 1.06 16 33 H 0.27 15.25 8.31 -92.71 -0.77 14.47 16 34 H 0.08 1.95 5.37 -2.39 -0.01 1.93 16 35 H 0.11 2.10 7.98 -2.39 -0.02 2.08 16 36 H 0.41 12.21 7.70 -92.70 -0.71 11.50 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.55 5.88 -2.38 -0.01 1.54 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.72 5.88 -2.39 -0.01 1.70 16 44 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.06 1.71 7.02 -2.38 -0.02 1.70 16 47 H 0.10 1.92 8.06 -2.39 -0.02 1.90 16 48 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 49 H 0.03 1.08 7.92 -2.39 -0.02 1.06 16 50 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 51 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 52 H 0.12 1.57 7.74 -2.39 -0.02 1.55 16 53 H 0.07 1.80 4.82 -2.39 -0.01 1.79 16 Total: -1.00 -76.94 405.23 3.38 -73.56 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.19 Total: 28.38 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 6.68 Total: 15.69 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -5.16 Total: -107.22 kcal Atomic # 8 Polarization: -57.52 SS G_CDS: -0.36 Total: -57.88 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -76.94 3.38 -73.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156912153.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.943 kcal (2) G-P(sol) polarization free energy of solvation -76.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds