Wall clock time and date at job start Sat Apr 11 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46939 * 2 1 4 4 C 1.53000 * 109.46854 * 240.00085 * 2 1 3 5 5 O 1.45193 * 109.47007 * 119.99869 * 2 1 3 6 6 C 1.34640 * 117.00060 * 60.00493 * 5 2 1 7 7 O 1.21508 * 120.00060 * 359.97438 * 6 5 2 8 8 N 1.34783 * 120.00141 * 179.97438 * 6 5 2 9 9 C 1.46919 * 120.63144 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 233.55709 * 9 8 6 11 11 C 1.53070 * 109.29524 * 305.57804 * 10 9 8 12 12 C 1.50699 * 109.44585 * 181.23845 * 11 10 9 13 13 O 1.21281 * 119.99908 * 239.79981 * 12 11 10 14 14 N 1.34777 * 119.99835 * 59.79079 * 12 11 10 15 15 C 1.46498 * 119.99785 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.47146 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47001 * 179.97438 * 16 15 14 18 18 C 1.50705 * 109.47004 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99527 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00024 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99985 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 120.00316 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47239 * 89.99752 * 22 20 18 24 24 H 1.48499 * 109.47127 * 210.00550 * 22 20 18 25 25 H 1.48507 * 109.46770 * 329.99651 * 22 20 18 26 26 C 1.53039 * 109.65812 * 61.15209 * 11 10 9 27 27 C 1.46928 * 120.62874 * 0.02562 * 8 6 5 28 28 H 1.09001 * 109.46902 * 299.99937 * 1 2 3 29 29 H 1.08998 * 109.47842 * 60.00145 * 1 2 3 30 30 H 1.08998 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46801 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47026 * 300.00268 * 3 2 1 33 33 H 1.08996 * 109.47101 * 59.99831 * 3 2 1 34 34 H 1.08998 * 109.47007 * 299.99671 * 4 2 1 35 35 H 1.08998 * 109.47019 * 60.00091 * 4 2 1 36 36 H 1.08996 * 109.46799 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.58751 * 353.41659 * 9 8 6 38 38 H 1.08996 * 109.58750 * 113.69843 * 9 8 6 39 39 H 1.08997 * 109.50046 * 65.38734 * 10 9 8 40 40 H 1.09003 * 109.49733 * 185.48713 * 10 9 8 41 41 H 1.09007 * 109.35101 * 301.12962 * 11 10 9 42 42 H 0.96993 * 120.00111 * 0.02562 * 14 12 11 43 43 H 1.08998 * 109.47272 * 300.00656 * 15 14 12 44 44 H 1.08999 * 109.47134 * 60.00113 * 15 14 12 45 45 H 1.08996 * 109.46807 * 300.00292 * 16 15 14 46 46 H 1.09004 * 109.46374 * 60.00198 * 16 15 14 47 47 H 1.08997 * 109.47161 * 300.00101 * 17 16 15 48 48 H 1.08999 * 109.47154 * 60.00142 * 17 16 15 49 49 H 0.97005 * 119.99957 * 179.97438 * 21 20 18 50 50 H 1.09002 * 109.49876 * 178.74890 * 26 11 10 51 51 H 1.09005 * 109.52615 * 58.67140 * 26 11 10 52 52 H 1.08998 * 109.58787 * 246.16207 * 27 8 6 53 53 H 1.09007 * 109.58600 * 6.44520 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5095 0.5040 8 7 2.0681 -2.6657 2.4167 9 6 1.6812 -4.0715 2.5975 10 6 1.0420 -4.2362 3.9799 11 6 2.0007 -3.7027 5.0473 12 6 1.3880 -3.8909 6.4112 13 8 1.1808 -2.9294 7.1208 14 7 1.0702 -5.1277 6.8423 15 6 0.4740 -5.3105 8.1680 16 6 0.2131 -6.7988 8.4090 17 6 -0.4089 -6.9897 9.7937 18 6 -0.6653 -8.4557 10.0313 19 1 -0.4097 -9.1787 9.2709 20 6 -1.2261 -8.8737 11.2194 21 7 -1.4494 -10.1530 11.4270 22 14 -1.6689 -7.6229 12.5345 23 1 -3.0639 -7.1588 12.3264 24 1 -1.5507 -8.2511 13.8748 25 1 -0.7435 -6.4646 12.4474 26 6 2.2622 -2.2141 4.8068 27 6 2.9159 -2.0298 3.4343 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7208 -1.2495 37 1 0.9641 -4.3552 1.8272 38 1 2.5647 -4.7058 2.5255 39 1 0.1087 -3.6744 4.0185 40 1 0.8399 -5.2914 4.1639 41 1 2.9419 -4.2500 4.9934 42 1 1.2361 -5.8966 6.2749 43 1 1.1575 -4.9339 8.9289 44 1 -0.4669 -4.7629 8.2219 45 1 -0.4703 -7.1757 7.6481 46 1 1.1544 -7.3459 8.3552 47 1 0.2749 -6.6129 10.5543 48 1 -1.3500 -6.4425 9.8479 49 1 -1.8436 -10.4471 12.2631 50 1 2.9275 -1.8319 5.5810 51 1 1.3187 -1.6691 4.8362 52 1 3.9008 -2.4969 3.4332 53 1 3.0155 -0.9667 3.2146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171594466.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:59 Heat of formation + Delta-G solvation = -164.243734 kcal Electronic energy + Delta-G solvation = -29951.565580 eV Core-core repulsion = 25821.481178 eV Total energy + Delta-G solvation = -4130.084401 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.99662 -41.06903 -39.23258 -37.55561 -36.95547 -35.27147 -35.11286 -33.94873 -33.09672 -32.08958 -29.20868 -28.35314 -28.27980 -27.17263 -24.70979 -24.54589 -23.31493 -22.24946 -21.87656 -20.90419 -20.19062 -19.11557 -18.89434 -18.03829 -17.62038 -17.25092 -16.95167 -16.69587 -16.25566 -16.18488 -15.70248 -15.52706 -15.44170 -15.00468 -14.83256 -14.79827 -14.66333 -14.32367 -14.15195 -13.80706 -13.57872 -13.48139 -13.21941 -13.11167 -12.96986 -12.86367 -12.84805 -12.73308 -12.69578 -12.45172 -12.32884 -12.21795 -11.93475 -11.81050 -11.74851 -11.66400 -11.59297 -11.37513 -11.33001 -11.03630 -10.77657 -10.76390 -10.06800 -9.79314 -8.29654 -6.33422 1.13755 1.36218 1.37865 1.49365 1.63583 1.75190 2.23385 2.35751 2.82165 3.06195 3.55394 3.70288 3.74929 3.77375 3.81753 3.96408 4.00348 4.10206 4.20327 4.23411 4.30421 4.36081 4.50765 4.51640 4.62628 4.65038 4.69304 4.73412 4.77450 4.77806 4.82001 4.85382 4.89164 4.89352 4.93855 4.99675 5.04285 5.10408 5.13498 5.27228 5.29053 5.33260 5.41478 5.46123 5.51484 5.52557 5.56039 5.65108 6.27233 6.28909 6.59928 6.74894 7.26814 7.27758 7.31587 8.86603 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.028004 B = 0.001674 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.634240 B =16720.545410 C =16974.478698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.124 3.876 3 C -0.136 4.136 4 C -0.177 4.177 5 O -0.366 6.366 6 C 0.646 3.354 7 O -0.595 6.595 8 N -0.596 5.596 9 C 0.130 3.870 10 C -0.121 4.121 11 C -0.097 4.097 12 C 0.511 3.489 13 O -0.588 6.588 14 N -0.716 5.716 15 C 0.126 3.874 16 C -0.100 4.100 17 C -0.013 4.013 18 C -0.531 4.531 19 H 0.039 0.961 20 C 0.005 3.995 21 N -0.949 5.949 22 Si 0.946 3.054 23 H -0.269 1.269 24 H -0.284 1.284 25 H -0.248 1.248 26 C -0.110 4.110 27 C 0.118 3.882 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.052 0.948 40 H 0.107 0.893 41 H 0.135 0.865 42 H 0.415 0.585 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.020 0.980 48 H 0.017 0.983 49 H 0.266 0.734 50 H 0.086 0.914 51 H 0.049 0.951 52 H 0.100 0.900 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.244 22.772 -26.609 37.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.088 3.912 3 C -0.193 4.193 4 C -0.234 4.234 5 O -0.281 6.281 6 C 0.402 3.598 7 O -0.486 6.486 8 N -0.337 5.337 9 C 0.009 3.991 10 C -0.159 4.159 11 C -0.118 4.118 12 C 0.299 3.701 13 O -0.469 6.469 14 N -0.367 5.367 15 C 0.002 3.998 16 C -0.138 4.138 17 C -0.051 4.051 18 C -0.569 4.569 19 H 0.057 0.943 20 C -0.192 4.192 21 N -0.590 5.590 22 Si 0.770 3.230 23 H -0.194 1.194 24 H -0.210 1.210 25 H -0.172 1.172 26 C -0.148 4.148 27 C -0.004 4.004 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.152 0.848 42 H 0.252 0.748 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.039 0.961 48 H 0.036 0.964 49 H 0.075 0.925 50 H 0.105 0.895 51 H 0.068 0.932 52 H 0.118 0.882 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.817 23.233 -26.285 37.018 hybrid contribution -0.726 -0.493 0.805 1.191 sum 11.091 22.740 -25.481 35.908 Atomic orbital electron populations 1.22472 0.94409 1.03530 1.03325 1.22387 0.94270 0.92788 0.81740 1.21877 1.02547 0.90697 1.04143 1.22448 1.01691 1.02147 0.97154 1.86299 1.71478 1.23106 1.47202 1.18209 0.78473 0.80861 0.82288 1.90881 1.42430 1.70996 1.44323 1.47177 1.52831 1.12651 1.20993 1.21731 1.01710 0.78861 0.96808 1.21936 0.97665 1.03208 0.93114 1.21369 1.01454 0.99277 0.89738 1.21242 0.77423 0.82256 0.89215 1.90685 1.55739 1.41246 1.59203 1.46017 1.63012 1.09200 1.18508 1.21268 0.97506 0.96801 0.84224 1.21477 1.01138 0.93301 0.97873 1.19476 0.96169 0.94644 0.94834 1.21473 1.40506 0.93027 1.01858 0.94300 1.25967 0.95202 0.97057 1.00934 1.70058 1.45828 1.16545 1.26578 0.85719 0.79598 0.79758 0.77958 1.19394 1.20993 1.17173 1.21664 1.01694 0.94279 0.97194 1.21845 0.93691 0.99696 0.85180 0.92468 0.89205 0.92042 0.90931 0.88150 0.91508 0.91938 0.89331 0.91747 0.89368 0.87731 0.92912 0.87498 0.84769 0.74754 0.92549 0.92875 0.91689 0.91494 0.96141 0.96431 0.92535 0.89518 0.93234 0.88212 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.84 8.37 71.98 0.60 -2.23 16 2 C 0.12 1.83 1.13 -10.79 -0.01 1.82 16 3 C -0.14 -1.19 8.85 71.98 0.64 -0.56 16 4 C -0.18 -2.48 8.37 71.98 0.60 -1.88 16 5 O -0.37 -6.76 8.52 -55.49 -0.47 -7.23 16 6 C 0.65 13.44 7.74 129.79 1.00 14.45 16 7 O -0.59 -15.12 11.29 19.81 0.22 -14.89 16 8 N -0.60 -9.51 2.98 -949.34 -2.82 -12.33 16 9 C 0.13 1.66 6.43 86.36 0.56 2.21 16 10 C -0.12 -1.61 5.27 30.68 0.16 -1.45 16 11 C -0.10 -1.43 2.48 -11.50 -0.03 -1.46 16 12 C 0.51 12.29 7.16 87.66 0.63 12.92 16 13 O -0.59 -19.72 15.98 -3.03 -0.05 -19.76 16 14 N -0.72 -16.47 5.44 -463.06 -2.52 -18.99 16 15 C 0.13 3.83 5.67 86.38 0.49 4.32 16 16 C -0.10 -3.48 5.27 30.59 0.16 -3.32 16 17 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 18 C -0.53 -29.84 9.66 25.60 0.25 -29.60 16 19 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 20 C 0.01 0.31 5.47 84.65 0.46 0.77 16 21 N -0.95 -59.00 13.96 21.44 0.30 -58.70 16 22 Si 0.95 44.22 27.47 68.60 1.88 46.11 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 26 C -0.11 -1.73 4.65 30.65 0.14 -1.59 16 27 C 0.12 1.42 6.44 86.34 0.56 1.97 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.32 5.88 -2.39 -0.01 1.31 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.10 0.48 8.14 -2.38 -0.02 0.47 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 1.23 5.88 -2.39 -0.01 1.21 16 35 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 1.41 7.00 -2.39 -0.02 1.40 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.11 1.03 7.53 -2.39 -0.02 1.01 16 41 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.42 6.90 7.87 -92.71 -0.73 6.17 16 43 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 47 H 0.02 0.91 7.20 -2.39 -0.02 0.90 16 48 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 49 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 50 H 0.09 1.39 8.07 -2.39 -0.02 1.37 16 51 H 0.05 1.05 8.13 -2.38 -0.02 1.03 16 52 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 53 H 0.10 1.18 6.93 -2.38 -0.02 1.16 16 Total: -1.00 -76.88 413.88 2.97 -73.91 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.10 Total: 15.98 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 6.33 Total: -4.09 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -5.04 Total: -90.02 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -0.30 Total: -41.89 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.11 kcal Total: -76.88 2.97 -73.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171594466.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.333 kcal (2) G-P(sol) polarization free energy of solvation -76.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds