Wall clock time and date at job start Sat Apr 11 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47161 * 2 1 4 4 C 1.52999 * 109.46964 * 239.99942 * 2 1 3 5 5 O 1.45204 * 109.47268 * 120.00167 * 2 1 3 6 6 C 1.34631 * 117.00046 * 59.99594 * 5 2 1 7 7 O 1.21517 * 120.00164 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00247 * 180.02562 * 6 5 2 9 9 C 1.47743 * 125.81887 * 359.90820 * 8 6 5 10 10 C 1.54909 * 104.83995 * 155.82587 * 9 8 6 11 11 C 1.55159 * 101.57990 * 37.09908 * 10 9 8 12 12 H 1.08995 * 110.87585 * 82.93006 * 11 10 9 13 13 C 1.53006 * 110.71889 * 206.13300 * 11 10 9 14 14 C 1.50698 * 109.46965 * 179.97438 * 13 11 10 15 15 O 1.21287 * 120.00239 * 359.97438 * 14 13 11 16 16 N 1.34775 * 119.99869 * 179.97438 * 14 13 11 17 17 C 1.46505 * 119.99819 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.46915 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.46890 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.46873 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99908 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00043 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99938 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00273 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47018 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47536 * 119.99921 * 24 22 20 27 27 H 1.48497 * 109.47226 * 240.00289 * 24 22 20 28 28 C 1.47020 * 125.64983 * 180.02562 * 8 6 5 29 29 H 1.09002 * 109.47026 * 299.99978 * 1 2 3 30 30 H 1.09001 * 109.47504 * 59.99871 * 1 2 3 31 31 H 1.09004 * 109.47478 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47237 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47153 * 299.99655 * 3 2 1 34 34 H 1.08993 * 109.47082 * 60.00148 * 3 2 1 35 35 H 1.09002 * 109.47469 * 299.99716 * 4 2 1 36 36 H 1.09000 * 109.47420 * 60.00302 * 4 2 1 37 37 H 1.09001 * 109.47090 * 179.97438 * 4 2 1 38 38 H 1.09003 * 110.29227 * 37.02448 * 9 8 6 39 39 H 1.08996 * 110.53057 * 274.75660 * 9 8 6 40 40 H 1.08994 * 111.00889 * 279.01887 * 10 9 8 41 41 H 1.09001 * 111.03628 * 155.18095 * 10 9 8 42 42 H 1.08996 * 109.46429 * 299.97004 * 13 11 10 43 43 H 1.08997 * 109.47048 * 59.97457 * 13 11 10 44 44 H 0.97001 * 120.00144 * 0.02562 * 16 14 13 45 45 H 1.09002 * 109.47219 * 300.00195 * 17 16 14 46 46 H 1.08997 * 109.47099 * 60.00374 * 17 16 14 47 47 H 1.09000 * 109.46509 * 300.00243 * 18 17 16 48 48 H 1.08997 * 109.47048 * 60.00200 * 18 17 16 49 49 H 1.08998 * 109.46692 * 299.99616 * 19 18 17 50 50 H 1.08994 * 109.47161 * 59.99633 * 19 18 17 51 51 H 0.97003 * 119.99972 * 179.97438 * 23 22 20 52 52 H 1.09002 * 109.88367 * 61.60808 * 28 8 6 53 53 H 1.09000 * 109.88319 * 300.59426 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5036 8 7 2.0672 -2.6655 2.4172 9 6 2.9197 -2.1433 3.5050 10 6 2.5981 -3.0401 4.7264 11 6 2.4117 -4.4262 4.0545 12 1 3.3739 -4.9125 3.8939 13 6 1.4915 -5.3152 4.8936 14 6 1.3297 -6.6516 4.2163 15 8 1.8943 -6.8713 3.1656 16 7 0.5575 -7.6027 4.7781 17 6 0.3998 -8.9017 4.1193 18 6 -0.5203 -9.7907 4.9585 19 6 -0.6846 -11.1475 4.2708 20 6 -1.5903 -12.0233 5.0976 21 1 -2.0074 -11.6494 6.0210 22 6 -1.8873 -13.3016 4.6748 23 7 -1.3798 -13.7567 3.5501 24 14 -3.0106 -14.3870 5.6993 25 1 -3.4455 -13.6457 6.9102 26 1 -4.2007 -14.7656 4.8960 27 1 -2.2779 -15.6127 6.1065 28 6 1.7483 -4.0711 2.7072 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 -1.7490 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1299 -0.7209 -1.2495 38 1 2.6655 -1.1052 3.7193 39 1 3.9733 -2.2279 3.2390 40 1 1.6801 -2.7173 5.2174 41 1 3.4303 -3.0559 5.4302 42 1 1.9280 -5.4593 5.8819 43 1 0.5167 -4.8377 4.9929 44 1 0.1056 -7.4269 5.6182 45 1 -0.0373 -8.7573 3.1312 46 1 1.3745 -9.3791 4.0192 47 1 -0.0836 -9.9350 5.9467 48 1 -1.4950 -9.3131 5.0581 49 1 -1.1210 -11.0034 3.2824 50 1 0.2902 -11.6249 4.1714 51 1 -1.5885 -14.6562 3.2528 52 1 2.1441 -4.7113 1.9187 53 1 0.6683 -4.1986 2.7810 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189119654.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:41 Heat of formation + Delta-G solvation = -164.040335 kcal Electronic energy + Delta-G solvation = -29499.816193 eV Core-core repulsion = 25369.740612 eV Total energy + Delta-G solvation = -4130.075581 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.92784 -40.92122 -39.49376 -37.67416 -36.92478 -35.22043 -35.16252 -33.86458 -32.95803 -30.80039 -29.12838 -28.40234 -28.30476 -27.75990 -25.30909 -24.36636 -22.68663 -22.30116 -21.75077 -20.76871 -20.46081 -18.98728 -18.56992 -17.97397 -17.72237 -17.51819 -16.98424 -16.75249 -16.46402 -16.24632 -16.11831 -15.57452 -15.26480 -14.95173 -14.70476 -14.44049 -14.22028 -14.19219 -13.87744 -13.74671 -13.54879 -13.44490 -13.35748 -13.09021 -12.91940 -12.88725 -12.83125 -12.73278 -12.55158 -12.48087 -12.36936 -12.28066 -12.19492 -11.99664 -11.67807 -11.64461 -11.57652 -11.42652 -11.22496 -11.15595 -10.73677 -10.57215 -10.04391 -9.83341 -8.20348 -6.32176 1.01586 1.41368 1.41632 1.54923 1.68679 1.72415 2.27119 2.42741 2.88000 3.13510 3.46247 3.58313 3.73227 3.76407 3.79231 3.92412 3.95923 4.19340 4.21536 4.26141 4.39913 4.43641 4.54454 4.55574 4.58266 4.62669 4.64091 4.72434 4.73331 4.80979 4.82452 4.84916 4.86378 4.94634 5.01320 5.03991 5.08037 5.12723 5.16894 5.21251 5.24907 5.32005 5.37130 5.43559 5.47519 5.54966 5.69737 5.83366 6.21169 6.38037 6.65732 6.85987 7.20775 7.35368 7.37919 8.91977 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020268 B = 0.001605 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.170057 B =17446.097482 C =18270.358150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.123 3.877 3 C -0.132 4.132 4 C -0.181 4.181 5 O -0.360 6.360 6 C 0.657 3.343 7 O -0.602 6.602 8 N -0.608 5.608 9 C 0.096 3.904 10 C -0.112 4.112 11 C -0.076 4.076 12 H 0.088 0.912 13 C -0.119 4.119 14 C 0.497 3.503 15 O -0.590 6.590 16 N -0.717 5.717 17 C 0.129 3.871 18 C -0.101 4.101 19 C 0.021 3.979 20 C -0.540 4.540 21 H 0.068 0.932 22 C -0.005 4.005 23 N -0.936 5.936 24 Si 0.969 3.031 25 H -0.257 1.257 26 H -0.281 1.281 27 H -0.280 1.280 28 C 0.136 3.864 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.121 0.879 42 H 0.142 0.858 43 H 0.120 0.880 44 H 0.417 0.583 45 H 0.041 0.959 46 H 0.047 0.953 47 H 0.071 0.929 48 H 0.067 0.933 49 H -0.011 1.011 50 H -0.008 1.008 51 H 0.263 0.737 52 H 0.042 0.958 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.505 35.586 3.560 37.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.087 3.913 3 C -0.189 4.189 4 C -0.238 4.238 5 O -0.275 6.275 6 C 0.412 3.588 7 O -0.493 6.493 8 N -0.349 5.349 9 C -0.025 4.025 10 C -0.149 4.149 11 C -0.096 4.096 12 H 0.107 0.893 13 C -0.159 4.159 14 C 0.285 3.715 15 O -0.471 6.471 16 N -0.369 5.369 17 C 0.005 3.995 18 C -0.139 4.139 19 C -0.017 4.017 20 C -0.578 4.578 21 H 0.086 0.914 22 C -0.202 4.202 23 N -0.576 5.576 24 Si 0.793 3.207 25 H -0.180 1.180 26 H -0.207 1.207 27 H -0.205 1.205 28 C 0.014 3.986 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.140 0.860 42 H 0.159 0.841 43 H 0.138 0.862 44 H 0.254 0.746 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.007 0.993 50 H 0.010 0.990 51 H 0.071 0.929 52 H 0.060 0.940 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.662 35.251 2.344 36.626 hybrid contribution -0.842 -1.479 -0.277 1.724 sum 8.820 33.772 2.068 34.966 Atomic orbital electron populations 1.22468 0.94127 1.03316 1.03765 1.22446 0.94551 0.92924 0.81361 1.21863 1.02470 0.90068 1.04501 1.22481 1.01632 1.01929 0.97795 1.86297 1.71465 1.22423 1.47298 1.17774 0.78733 0.80951 0.81317 1.90915 1.42969 1.71294 1.44151 1.47447 1.53115 1.12709 1.21646 1.22687 0.94581 0.99703 0.85495 1.22918 1.05220 0.90733 0.96052 1.21958 0.99229 0.96594 0.91815 0.89340 1.21780 1.03329 0.89611 1.01140 1.21631 0.77571 0.87333 0.84966 1.90716 1.49085 1.82130 1.25144 1.46022 1.50077 1.13803 1.27046 1.21164 0.99049 0.83381 0.95930 1.21586 0.98559 0.94914 0.98810 1.18969 0.95279 0.92408 0.95013 1.21725 1.29134 0.98992 1.07978 0.91373 1.26053 0.97930 0.99920 0.96340 1.70129 1.46168 1.17940 1.23398 0.85339 0.78131 0.78327 0.78874 1.18033 1.20704 1.20545 1.21914 0.99598 0.78623 0.98464 0.91567 0.89048 0.92699 0.91074 0.87995 0.90799 0.92794 0.88965 0.91916 0.88843 0.90397 0.88516 0.86038 0.84054 0.86221 0.74571 0.94033 0.93427 0.91070 0.91454 0.99301 0.99002 0.92854 0.93964 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 8.37 71.98 0.60 -2.58 16 2 C 0.12 2.14 1.13 -10.80 -0.01 2.13 16 3 C -0.13 -1.27 8.85 71.98 0.64 -0.63 16 4 C -0.18 -3.37 8.37 71.98 0.60 -2.77 16 5 O -0.36 -7.80 9.43 -55.40 -0.52 -8.32 16 6 C 0.66 17.61 7.93 129.79 1.03 18.64 16 7 O -0.60 -20.32 12.21 19.79 0.24 -20.08 16 8 N -0.61 -13.44 3.34 -941.28 -3.14 -16.58 16 9 C 0.10 1.19 6.94 86.79 0.60 1.79 16 10 C -0.11 -0.80 6.53 31.99 0.21 -0.59 16 11 C -0.08 -1.14 2.55 -9.60 -0.02 -1.17 16 12 H 0.09 1.53 8.04 -2.39 -0.02 1.51 16 13 C -0.12 -1.53 5.09 29.85 0.15 -1.38 16 14 C 0.50 12.59 7.62 87.66 0.67 13.25 16 15 O -0.59 -21.11 14.86 -3.05 -0.05 -21.15 16 16 N -0.72 -18.13 5.56 -463.04 -2.57 -20.70 16 17 C 0.13 4.55 5.67 86.38 0.49 5.04 16 18 C -0.10 -3.86 5.27 30.60 0.16 -3.70 16 19 C 0.02 1.10 4.97 29.85 0.15 1.25 16 20 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 21 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 22 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 23 N -0.94 -57.74 13.29 21.45 0.28 -57.45 16 24 Si 0.97 43.95 29.54 68.60 2.03 45.97 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 28 C 0.14 3.24 5.45 86.73 0.47 3.72 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.37 5.88 -2.38 -0.01 1.36 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.05 1.41 5.88 -2.39 -0.01 1.40 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 0.94 8.05 -2.39 -0.02 0.92 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.10 0.47 8.05 -2.39 -0.02 0.45 16 41 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.12 1.09 8.06 -2.39 -0.02 1.07 16 44 H 0.42 7.35 8.47 -92.71 -0.79 6.56 16 45 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 48 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 49 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 50 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 51 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 52 H 0.04 1.33 7.68 -2.39 -0.02 1.32 16 53 H 0.05 1.41 7.76 -2.39 -0.02 1.39 16 Total: -1.00 -82.52 423.07 2.80 -79.73 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.09 Total: 15.45 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 6.43 Total: 3.14 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -5.43 Total: -94.74 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -0.33 Total: -49.55 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -82.52 2.80 -79.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189119654.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.312 kcal (2) G-P(sol) polarization free energy of solvation -82.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds