Wall clock time and date at job start Sat Apr 11 2020 06:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47619 * 2 1 4 4 C 1.53006 * 109.47268 * 239.99469 * 2 1 3 5 5 O 1.45203 * 109.46960 * 120.00281 * 2 1 3 6 6 C 1.34633 * 117.00522 * 59.99814 * 5 2 1 7 7 O 1.21512 * 119.99654 * 359.97438 * 6 5 2 8 8 N 1.34769 * 120.00352 * 180.02562 * 6 5 2 9 9 C 1.46496 * 120.00218 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47549 * 325.00508 * 9 8 6 11 11 C 1.53007 * 109.47361 * 205.00059 * 9 8 6 12 12 C 1.52992 * 109.46917 * 64.29957 * 11 9 8 13 13 C 1.52998 * 109.47473 * 65.66527 * 12 11 9 14 14 C 1.53002 * 109.47509 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46643 * 300.00064 * 14 13 12 16 16 C 1.53003 * 109.47550 * 60.00158 * 15 14 13 17 17 C 1.53003 * 109.46655 * 299.99704 * 16 15 14 18 18 C 1.50702 * 109.46958 * 85.00289 * 9 8 6 19 19 O 1.21295 * 119.99837 * 359.97438 * 18 9 8 20 20 N 1.34774 * 120.00132 * 180.02562 * 18 9 8 21 21 C 1.37101 * 120.00227 * 179.97438 * 20 18 9 22 22 H 1.08004 * 119.99773 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00087 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00124 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99856 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47260 * 60.00029 * 25 23 21 27 27 H 1.48504 * 109.47379 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47464 * 300.00091 * 25 23 21 29 29 H 1.09002 * 109.47333 * 300.00066 * 1 2 3 30 30 H 1.09007 * 109.47104 * 60.00100 * 1 2 3 31 31 H 1.09004 * 109.47627 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47368 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46801 * 300.00086 * 3 2 1 34 34 H 1.09002 * 109.46822 * 59.99621 * 3 2 1 35 35 H 1.08990 * 109.47193 * 300.00513 * 4 2 1 36 36 H 1.09000 * 109.46534 * 60.00587 * 4 2 1 37 37 H 1.08995 * 109.46850 * 180.02562 * 4 2 1 38 38 H 0.97002 * 120.00044 * 0.02562 * 8 6 5 39 39 H 1.08996 * 109.47137 * 304.29572 * 11 9 8 40 40 H 1.08999 * 109.47203 * 184.29873 * 11 9 8 41 41 H 1.08998 * 109.47098 * 305.66402 * 12 11 9 42 42 H 1.08998 * 109.47061 * 59.99852 * 13 12 11 43 43 H 1.09005 * 109.46975 * 299.99950 * 13 12 11 44 44 H 1.08994 * 109.47088 * 179.97438 * 14 13 12 45 45 H 1.09001 * 109.47063 * 59.99338 * 14 13 12 46 46 H 1.09005 * 109.47100 * 179.97438 * 15 14 13 47 47 H 1.08998 * 109.47230 * 299.99708 * 15 14 13 48 48 H 1.08998 * 109.47221 * 59.99545 * 16 15 14 49 49 H 1.08992 * 109.47171 * 179.97438 * 16 15 14 50 50 H 1.08998 * 109.47176 * 299.99869 * 17 16 15 51 51 H 1.08999 * 109.47202 * 180.02562 * 17 16 15 52 52 H 0.96999 * 120.00176 * 0.02562 * 20 18 9 53 53 H 0.97002 * 120.00073 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0139 -0.6846 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9508 -2.5094 0.5041 8 7 2.0671 -2.6654 2.4171 9 6 1.6730 -4.0665 2.5837 10 1 0.6640 -4.2087 2.1967 11 6 1.7058 -4.4325 4.0690 12 6 0.6576 -3.6095 4.8203 13 6 -0.7411 -4.0131 4.3496 14 6 -1.7894 -3.1904 5.1014 15 6 -1.6616 -3.4519 6.6035 16 6 -0.2628 -3.0483 7.0743 17 6 0.7854 -3.8709 6.3224 18 6 2.6303 -4.9509 1.8271 19 8 3.5510 -4.4591 1.2092 20 7 2.4630 -6.2882 1.8363 21 6 3.3336 -7.0928 1.1475 22 1 4.1534 -6.6549 0.5973 23 6 3.1614 -8.4715 1.1574 24 7 2.1637 -9.0043 1.8265 25 14 4.3472 -9.5676 0.2185 26 1 5.7224 -9.3741 0.7445 27 1 3.9484 -10.9880 0.3879 28 1 4.3142 -9.2123 -1.2230 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1299 -0.7217 -1.2489 38 1 2.6261 -2.2363 3.0837 39 1 2.6948 -4.2184 4.4741 40 1 1.4871 -5.4939 4.1866 41 1 0.8164 -2.5498 4.6207 42 1 -0.8999 -5.0728 4.5491 43 1 -0.8320 -3.8273 3.2794 44 1 -2.7858 -3.4777 4.7657 45 1 -1.6308 -2.1306 4.9024 46 1 -2.4081 -2.8655 7.1392 47 1 -1.8202 -4.5118 6.8026 48 1 -0.1042 -1.9884 6.8752 49 1 -0.1720 -3.2341 8.1444 50 1 0.6268 -4.9308 6.5215 51 1 1.7819 -3.5837 6.6580 52 1 1.7261 -6.6814 2.3295 53 1 2.0432 -9.9667 1.8331 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000208912672.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:51 Heat of formation + Delta-G solvation = -175.864162 kcal Electronic energy + Delta-G solvation = -31917.217271 eV Core-core repulsion = 27786.628970 eV Total energy + Delta-G solvation = -4130.588301 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.92496 -40.62821 -39.41208 -38.18549 -36.30846 -35.88787 -35.04311 -33.50079 -32.95067 -31.58020 -29.78498 -28.35985 -28.26740 -26.99568 -25.31973 -23.59781 -23.37481 -21.95266 -21.15162 -20.87252 -20.52211 -19.97737 -19.26272 -18.04741 -17.64409 -16.96898 -16.73609 -16.37550 -16.18768 -15.89945 -15.48162 -15.36332 -15.28081 -15.11605 -14.98579 -14.73220 -14.46600 -14.43378 -13.54918 -13.45894 -13.36572 -13.23535 -13.13697 -12.97667 -12.91458 -12.87293 -12.83480 -12.73479 -12.51906 -12.45986 -12.30355 -12.18198 -12.13867 -11.92815 -11.76684 -11.53804 -11.36636 -11.27903 -11.11545 -11.05296 -10.82471 -10.76622 -10.04422 -9.89532 -8.48332 -5.97584 1.13948 1.37026 1.39756 1.50607 1.84474 1.97777 2.28810 3.06446 3.15218 3.25246 3.69965 3.78036 3.80275 3.82092 3.85487 3.96701 4.01798 4.16617 4.29273 4.34364 4.49392 4.54227 4.60158 4.61738 4.63303 4.66503 4.71705 4.76341 4.76997 4.83163 4.84538 4.86585 4.89722 5.04379 5.08525 5.12071 5.23020 5.24566 5.30656 5.33658 5.37058 5.37701 5.38387 5.40395 5.46213 5.53482 5.58964 5.67669 5.95605 6.43780 6.54973 7.08615 7.39558 7.50783 8.04935 8.68240 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.006885 B = 0.004505 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4065.545654 B = 6214.284755 C = 9520.536653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.123 3.877 3 C -0.132 4.132 4 C -0.181 4.181 5 O -0.367 6.367 6 C 0.653 3.347 7 O -0.595 6.595 8 N -0.673 5.673 9 C 0.172 3.828 10 H 0.101 0.899 11 C -0.109 4.109 12 C -0.073 4.073 13 C -0.122 4.122 14 C -0.114 4.114 15 C -0.118 4.118 16 C -0.115 4.115 17 C -0.113 4.113 18 C 0.424 3.576 19 O -0.628 6.628 20 N -0.561 5.561 21 C -0.337 4.337 22 H 0.075 0.925 23 C -0.007 4.007 24 N -0.914 5.914 25 Si 0.991 3.009 26 H -0.270 1.270 27 H -0.267 1.267 28 H -0.276 1.276 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.096 0.904 37 H 0.051 0.949 38 H 0.415 0.585 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.045 0.955 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.071 0.929 50 H 0.061 0.939 51 H 0.069 0.931 52 H 0.397 0.603 53 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.670 17.186 8.723 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.087 3.913 3 C -0.188 4.188 4 C -0.239 4.239 5 O -0.282 6.282 6 C 0.406 3.594 7 O -0.486 6.486 8 N -0.331 5.331 9 C 0.064 3.936 10 H 0.118 0.882 11 C -0.148 4.148 12 C -0.092 4.092 13 C -0.159 4.159 14 C -0.152 4.152 15 C -0.156 4.156 16 C -0.152 4.152 17 C -0.151 4.151 18 C 0.210 3.790 19 O -0.516 6.516 20 N -0.198 5.198 21 C -0.466 4.466 22 H 0.093 0.907 23 C -0.207 4.207 24 N -0.555 5.555 25 Si 0.814 3.186 26 H -0.195 1.195 27 H -0.191 1.191 28 H -0.202 1.202 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.114 0.886 37 H 0.070 0.930 38 H 0.252 0.748 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.079 0.921 51 H 0.088 0.912 52 H 0.231 0.769 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.481 17.114 7.892 20.277 hybrid contribution 0.567 -1.117 -0.471 1.338 sum -6.914 15.997 7.421 18.942 Atomic orbital electron populations 1.22449 0.93437 1.03556 1.03913 1.22442 0.95025 0.92763 0.81047 1.21868 1.02197 0.90087 1.04693 1.22471 1.01121 1.01919 0.98346 1.86276 1.71726 1.22808 1.47364 1.18141 0.78559 0.80814 0.81849 1.90879 1.43000 1.71121 1.43571 1.44123 1.55111 1.10523 1.23331 1.20629 0.97085 0.78501 0.97412 0.88164 1.21917 1.01488 1.01802 0.89573 1.21082 0.93298 0.99521 0.95284 1.21669 0.94764 1.00419 0.99058 1.21481 0.98257 0.99751 0.95689 1.21541 0.97331 1.01528 0.95153 1.21505 0.94185 0.99832 0.99706 1.21576 0.99705 1.00632 0.93141 1.21285 0.88415 0.83415 0.85895 1.90486 1.36813 1.74924 1.49336 1.41853 1.27748 1.04771 1.45406 1.19594 1.09426 0.88781 1.28839 0.90689 1.25994 0.98964 0.97790 0.97997 1.69653 1.30572 1.13488 1.41753 0.85034 0.78174 0.77142 0.78251 1.19478 1.19095 1.20167 0.91123 0.88892 0.92495 0.91686 0.87678 0.90424 0.93233 0.88565 0.93022 0.74831 0.90109 0.89849 0.90531 0.91936 0.93578 0.92001 0.92152 0.91179 0.92197 0.91755 0.91073 0.92052 0.91207 0.76881 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.22 8.37 71.98 0.60 -3.61 16 2 C 0.12 3.23 1.13 -10.79 -0.01 3.21 16 3 C -0.13 -2.27 8.85 71.98 0.64 -1.63 16 4 C -0.18 -5.34 8.37 71.98 0.60 -4.74 16 5 O -0.37 -11.75 9.94 -55.42 -0.55 -12.31 16 6 C 0.65 24.61 7.89 129.79 1.02 25.63 16 7 O -0.59 -25.99 11.54 19.80 0.23 -25.76 16 8 N -0.67 -23.08 3.94 -573.74 -2.26 -25.34 16 9 C 0.17 6.36 2.25 44.25 0.10 6.46 16 10 H 0.10 3.87 5.83 -2.39 -0.01 3.85 16 11 C -0.11 -3.12 4.15 30.59 0.13 -2.99 16 12 C -0.07 -1.62 2.13 -10.80 -0.02 -1.65 16 13 C -0.12 -2.83 4.98 30.59 0.15 -2.67 16 14 C -0.11 -2.17 5.92 30.60 0.18 -1.99 16 15 C -0.12 -1.91 5.92 30.60 0.18 -1.73 16 16 C -0.11 -1.79 5.92 30.60 0.18 -1.61 16 17 C -0.11 -2.09 5.20 30.60 0.16 -1.93 16 18 C 0.42 21.22 7.14 87.66 0.63 21.84 16 19 O -0.63 -36.70 15.90 -3.08 -0.05 -36.75 16 20 N -0.56 -29.69 5.15 -306.98 -1.58 -31.27 16 21 C -0.34 -19.63 9.68 84.04 0.81 -18.81 16 22 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 23 C -0.01 -0.37 5.50 84.93 0.47 0.09 16 24 N -0.91 -49.51 13.05 21.66 0.28 -49.23 16 25 Si 0.99 43.62 29.55 68.60 2.03 45.65 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 27 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 28 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.06 1.77 5.88 -2.39 -0.01 1.76 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.90 5.88 -2.39 -0.01 1.88 16 36 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.41 11.89 8.71 -92.71 -0.81 11.09 16 39 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.08 2.52 7.45 -2.39 -0.02 2.51 16 41 H 0.08 1.65 7.58 -2.39 -0.02 1.63 16 42 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.05 1.25 6.50 -2.38 -0.02 1.23 16 44 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.07 0.96 8.14 -2.38 -0.02 0.95 16 47 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 52 H 0.40 19.85 7.27 -92.71 -0.67 19.18 16 53 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -73.61 412.78 3.34 -70.27 By element: Atomic # 1 Polarization: 51.45 SS G_CDS: -0.58 Total: 50.87 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 5.82 Total: 13.86 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -3.56 Total: -105.84 kcal Atomic # 8 Polarization: -74.45 SS G_CDS: -0.37 Total: -74.82 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -73.61 3.34 -70.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000208912672.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.594 kcal (2) G-P(sol) polarization free energy of solvation -73.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds