Wall clock time and date at job start Sat Apr 11 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46730 * 2 1 4 4 H 1.09007 * 109.51739 * 304.87907 * 3 2 1 5 5 C 1.53104 * 109.51782 * 184.71171 * 3 2 1 6 6 N 1.47013 * 109.40312 * 182.72756 * 5 3 2 7 7 C 1.46900 * 111.02900 * 182.79440 * 6 5 3 8 8 H 1.09000 * 109.47474 * 295.52663 * 7 6 5 9 9 C 1.52999 * 109.47368 * 175.52143 * 7 6 5 10 10 C 1.50710 * 109.46657 * 55.52372 * 7 6 5 11 11 O 1.21273 * 119.99790 * 30.69729 * 10 7 6 12 12 N 1.34774 * 119.99674 * 210.69334 * 10 7 6 13 13 C 1.46502 * 120.00260 * 354.80086 * 12 10 7 14 14 C 1.46502 * 119.99771 * 174.79646 * 12 10 7 15 15 C 1.50697 * 109.47312 * 90.00167 * 14 12 10 16 16 H 1.07998 * 119.99707 * 359.97438 * 15 14 12 17 17 C 1.37878 * 120.00071 * 180.02562 * 15 14 12 18 18 N 1.31509 * 119.99837 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99672 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47372 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47314 * 119.99947 * 19 17 15 22 22 H 1.48508 * 109.47011 * 239.99667 * 19 17 15 23 23 C 1.47137 * 110.67592 * 59.05697 * 6 5 3 24 24 C 1.52462 * 109.33930 * 302.49106 * 23 6 5 25 25 C 1.54321 * 110.02032 * 293.17296 * 24 23 6 26 26 C 1.55104 * 101.96488 * 220.67634 * 25 24 23 27 27 O 1.44430 * 103.55669 * 36.61662 * 26 25 24 28 28 C 1.43895 * 106.99768 * 320.26436 * 27 26 25 29 29 O 1.42314 * 110.82648 * 55.18250 * 24 23 6 30 30 H 1.08994 * 109.47875 * 300.00182 * 1 2 3 31 31 H 1.09007 * 109.47291 * 60.00439 * 1 2 3 32 32 H 1.09003 * 109.47309 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47552 * 240.00226 * 2 1 3 34 34 H 1.08998 * 109.46766 * 119.99293 * 2 1 3 35 35 H 1.08993 * 109.48742 * 302.68718 * 5 3 2 36 36 H 1.09001 * 109.48230 * 62.72759 * 5 3 2 37 37 H 1.08999 * 109.47124 * 185.40213 * 9 7 6 38 38 H 1.08997 * 109.47011 * 305.40203 * 9 7 6 39 39 H 1.09003 * 109.46577 * 65.40349 * 9 7 6 40 40 H 1.09001 * 109.47448 * 94.62837 * 13 12 10 41 41 H 1.09005 * 109.46867 * 214.62713 * 13 12 10 42 42 H 1.09003 * 109.47046 * 334.62253 * 13 12 10 43 43 H 1.09000 * 109.47187 * 210.00300 * 14 12 10 44 44 H 1.09005 * 109.46935 * 329.99614 * 14 12 10 45 45 H 0.97003 * 119.99645 * 180.02562 * 18 17 15 46 46 H 1.09001 * 109.49545 * 182.51866 * 23 6 5 47 47 H 1.09007 * 109.49299 * 62.45898 * 23 6 5 48 48 H 1.09002 * 110.92756 * 338.83568 * 25 24 23 49 49 H 1.08991 * 110.93310 * 102.50530 * 25 24 23 50 50 H 1.09002 * 110.60444 * 278.09807 * 26 25 24 51 51 H 1.09002 * 110.73853 * 155.19917 * 26 25 24 52 52 H 1.08999 * 109.90453 * 266.99055 * 28 27 26 53 53 H 1.08997 * 110.05688 * 145.81631 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6073 1.9817 -0.8429 5 6 3.5663 1.4455 -0.1185 6 7 4.0586 2.8292 -0.0526 7 6 5.5161 2.8792 -0.2294 8 1 6.0007 2.3665 0.6014 9 6 5.9757 4.3380 -0.2665 10 6 5.8885 2.2022 -1.5234 11 8 5.1195 2.2213 -2.4609 12 7 7.0761 1.5756 -1.6385 13 6 8.0518 1.6489 -0.5481 14 6 7.3914 0.8210 -2.8541 15 6 8.0602 1.7316 -3.8513 16 1 8.2327 2.7688 -3.6045 17 6 8.4509 1.2409 -5.0792 18 7 8.2403 -0.0219 -5.3798 19 14 9.2805 2.3696 -6.3150 20 1 9.4008 3.7325 -5.7378 21 1 10.6329 1.8455 -6.6340 22 1 8.4669 2.4281 -7.5560 23 6 3.6592 3.4629 1.2138 24 6 2.1408 3.4182 1.3439 25 6 1.4917 4.3146 0.2684 26 6 0.3437 4.9902 1.0630 27 8 0.9155 5.1986 2.3728 28 6 1.6981 4.0310 2.6808 29 8 1.6617 2.0836 1.2227 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8932 -0.5137 0.8900 35 1 3.9957 0.8679 0.6999 36 1 3.8579 1.0005 -1.0699 37 1 7.0411 4.3777 -0.4932 38 1 5.4203 4.8745 -1.0358 39 1 5.7930 4.8011 0.7032 40 1 7.9421 0.7771 0.0969 41 1 9.0596 1.6693 -0.9631 42 1 7.8798 2.5549 0.0330 43 1 8.0618 -0.0022 -2.6071 44 1 6.4718 0.4241 -3.2841 45 1 8.5154 -0.3672 -6.2436 46 1 3.9948 4.4999 1.2234 47 1 4.1118 2.9263 2.0477 48 1 2.2003 5.0569 -0.0991 49 1 1.0973 3.7151 -0.5519 50 1 -0.5217 4.3302 1.1227 51 1 0.0681 5.9420 0.6089 52 1 1.0927 3.3142 3.2354 53 1 2.5725 4.3113 3.2681 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331622651.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:58 Heat of formation + Delta-G solvation = -133.786518 kcal Electronic energy + Delta-G solvation = -32428.570861 eV Core-core repulsion = 28299.807183 eV Total energy + Delta-G solvation = -4128.763677 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.01029 -40.78604 -39.06676 -37.21622 -36.52265 -35.06461 -34.75495 -32.65305 -32.06755 -30.80231 -29.79622 -28.32958 -27.54744 -26.91381 -25.37237 -24.19180 -23.84610 -22.92106 -22.18080 -20.53081 -19.83285 -18.70310 -18.42197 -17.97924 -17.72134 -17.09690 -16.98329 -16.57589 -16.18821 -15.99446 -15.97353 -15.66849 -15.26618 -15.02298 -14.92945 -14.68948 -14.56187 -14.17629 -13.96695 -13.85432 -13.56585 -13.50409 -13.36908 -13.19798 -13.03770 -12.90308 -12.83413 -12.78171 -12.61870 -12.52708 -12.50064 -12.36261 -12.22320 -12.05268 -11.88602 -11.76069 -11.68974 -11.31255 -10.71335 -10.68204 -10.66495 -10.40067 -9.45211 -9.38568 -8.23979 -6.38338 1.34807 1.37414 1.49015 1.76618 2.14860 2.38763 2.45337 2.71395 2.94776 3.05687 3.40458 3.58630 3.65726 3.77856 3.84737 3.93650 4.00695 4.08093 4.13483 4.20524 4.25620 4.29340 4.32120 4.35339 4.41820 4.56746 4.59140 4.64376 4.68152 4.71280 4.73379 4.76157 4.80589 4.82349 4.88255 4.90665 4.98099 5.02164 5.06091 5.09317 5.18167 5.18973 5.23499 5.38264 5.54225 5.71846 5.73298 5.82381 5.90623 6.04656 6.21039 6.68964 6.77135 7.27447 7.48051 8.83189 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.003021 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.172210 B = 9267.539241 C = 9910.145424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.105 3.895 4 H 0.058 0.942 5 C 0.025 3.975 6 N -0.525 5.525 7 C 0.077 3.923 8 H 0.082 0.918 9 C -0.135 4.135 10 C 0.502 3.498 11 O -0.575 6.575 12 N -0.612 5.612 13 C 0.076 3.924 14 C 0.263 3.737 15 C -0.539 4.539 16 H 0.052 0.948 17 C 0.007 3.993 18 N -0.928 5.928 19 Si 0.967 3.033 20 H -0.267 1.267 21 H -0.268 1.268 22 H -0.282 1.282 23 C 0.037 3.963 24 C 0.087 3.913 25 C -0.166 4.166 26 C 0.050 3.950 27 O -0.388 6.388 28 C 0.067 3.933 29 O -0.367 6.367 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.023 0.977 44 H -0.005 1.005 45 H 0.267 0.733 46 H 0.109 0.891 47 H 0.057 0.943 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.065 0.935 51 H 0.108 0.892 52 H 0.075 0.925 53 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.467 6.773 19.732 23.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C 0.047 3.953 4 H 0.076 0.924 5 C -0.103 4.103 6 N -0.250 5.250 7 C -0.035 4.035 8 H 0.100 0.900 9 C -0.193 4.193 10 C 0.290 3.710 11 O -0.454 6.454 12 N -0.344 5.344 13 C -0.067 4.067 14 C 0.142 3.858 15 C -0.578 4.578 16 H 0.070 0.930 17 C -0.192 4.192 18 N -0.568 5.568 19 Si 0.791 3.209 20 H -0.191 1.191 21 H -0.193 1.193 22 H -0.208 1.208 23 C -0.091 4.091 24 C 0.047 3.953 25 C -0.204 4.204 26 C -0.026 4.026 27 O -0.307 6.307 28 C -0.010 4.010 29 O -0.286 6.286 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.119 0.881 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.041 0.959 44 H 0.014 0.986 45 H 0.076 0.924 46 H 0.127 0.873 47 H 0.075 0.925 48 H 0.104 0.896 49 H 0.094 0.906 50 H 0.083 0.917 51 H 0.126 0.874 52 H 0.093 0.907 53 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.159 6.994 19.006 23.622 hybrid contribution 1.155 -0.617 -1.145 1.740 sum -11.004 6.377 17.861 21.926 Atomic orbital electron populations 1.21641 0.93837 1.02334 1.01997 1.21531 0.97831 0.92956 1.02961 1.22127 0.91595 0.94636 0.86898 0.92427 1.22761 0.96983 0.89471 1.01096 1.61943 1.10626 1.17494 1.34959 1.21658 0.88982 0.99026 0.93789 0.90024 1.21787 1.01517 0.91841 1.04116 1.21026 0.81201 0.78619 0.90183 1.90639 1.52110 1.60425 1.42209 1.48210 1.16309 1.50908 1.18996 1.21967 0.92790 1.02920 0.88979 1.18707 0.94241 0.90894 0.81955 1.21706 1.38725 0.96558 1.00779 0.92980 1.25847 0.96592 0.96725 1.00001 1.70052 1.48235 1.15157 1.23396 0.85382 0.78277 0.78931 0.78308 1.19136 1.19348 1.20834 1.22824 0.94760 1.01811 0.89657 1.22502 0.92914 0.83429 0.96480 1.23514 0.98787 0.99674 0.98430 1.23655 0.95244 1.01690 0.81997 1.88900 1.66756 1.39595 1.35466 1.23054 0.96809 0.87367 0.93777 1.87868 1.75510 1.26047 1.39217 0.92145 0.93062 0.91417 0.90862 0.90638 0.93806 0.92052 0.91136 0.92804 0.88118 0.91487 0.91357 0.88816 0.95917 0.98647 0.92424 0.87316 0.92456 0.89620 0.90600 0.91710 0.87440 0.90684 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.81 71.98 0.71 -1.94 16 2 C -0.11 -2.54 5.65 30.59 0.17 -2.37 16 3 C 0.11 2.67 2.53 30.63 0.08 2.75 16 4 H 0.06 1.64 6.40 -2.38 -0.02 1.62 16 5 C 0.03 0.74 4.53 86.32 0.39 1.13 16 6 N -0.52 -14.47 4.15 -875.29 -3.63 -18.10 16 7 C 0.08 2.18 1.62 44.17 0.07 2.25 16 8 H 0.08 1.91 6.75 -2.39 -0.02 1.90 16 9 C -0.14 -3.19 8.56 71.98 0.62 -2.57 16 10 C 0.50 20.76 5.67 87.66 0.50 21.26 16 11 O -0.57 -29.90 15.07 -3.01 -0.05 -29.94 16 12 N -0.61 -25.84 2.86 -851.11 -2.43 -28.27 16 13 C 0.08 2.23 9.88 127.77 1.26 3.49 16 14 C 0.26 14.24 5.14 85.63 0.44 14.68 16 15 C -0.54 -31.22 9.39 25.60 0.24 -30.98 16 16 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 17 C 0.01 0.42 5.46 84.66 0.46 0.88 16 18 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 19 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 C 0.04 0.73 3.68 86.08 0.32 1.05 16 24 C 0.09 1.76 0.99 -10.33 -0.01 1.75 16 25 C -0.17 -3.45 5.98 31.76 0.19 -3.26 16 26 C 0.05 0.89 7.73 72.70 0.56 1.45 16 27 O -0.39 -7.76 11.53 -148.98 -1.72 -9.48 16 28 C 0.07 1.14 7.19 72.18 0.52 1.66 16 29 O -0.37 -8.47 9.40 -148.98 -1.40 -9.87 16 30 H 0.06 1.13 7.82 -2.39 -0.02 1.11 16 31 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 2.31 6.08 -2.39 -0.01 2.29 16 37 H 0.07 1.64 7.23 -2.39 -0.02 1.63 16 38 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.10 1.59 6.69 -2.39 -0.02 1.57 16 40 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.07 2.11 8.11 -2.38 -0.02 2.09 16 42 H 0.09 2.09 5.40 -2.39 -0.01 2.07 16 43 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 44 H 0.00 -0.29 7.50 -2.38 -0.02 -0.30 16 45 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 46 H 0.11 1.84 6.29 -2.39 -0.02 1.83 16 47 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 48 H 0.09 1.85 7.77 -2.39 -0.02 1.83 16 49 H 0.08 1.78 6.21 -2.39 -0.01 1.77 16 50 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 52 H 0.08 1.27 7.96 -2.39 -0.02 1.25 16 53 H 0.12 1.47 7.68 -2.39 -0.02 1.45 16 Total: -1.00 -74.78 404.46 0.48 -74.31 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.88 Total: 18.95 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 6.51 Total: 11.23 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -5.78 Total: -102.40 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -3.16 Total: -49.28 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -74.78 0.48 -74.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331622651.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.479 kcal (2) G-P(sol) polarization free energy of solvation -74.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds