Wall clock time and date at job start Sat Apr 11 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47123 * 2 1 4 4 H 1.09000 * 109.51094 * 305.10792 * 3 2 1 5 5 C 1.53086 * 109.51362 * 184.99870 * 3 2 1 6 6 N 1.47023 * 109.38276 * 182.73462 * 5 3 2 7 7 C 1.46902 * 111.00130 * 182.81706 * 6 5 3 8 8 H 1.08994 * 109.47471 * 186.04439 * 7 6 5 9 9 C 1.52996 * 109.47133 * 306.04840 * 7 6 5 10 10 C 1.50702 * 109.47027 * 66.04446 * 7 6 5 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 7 6 12 12 N 1.34777 * 119.99928 * 179.72353 * 10 7 6 13 13 C 1.46506 * 120.00264 * 0.28128 * 12 10 7 14 14 C 1.46499 * 120.00199 * 180.27479 * 12 10 7 15 15 C 1.50697 * 109.46949 * 90.00203 * 14 12 10 16 16 H 1.08004 * 120.00186 * 0.02562 * 15 14 12 17 17 C 1.37881 * 120.00081 * 180.02562 * 15 14 12 18 18 N 1.31519 * 120.00096 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00103 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46927 * 59.99717 * 19 17 15 21 21 H 1.48496 * 109.47287 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47040 * 299.99940 * 19 17 15 23 23 C 1.47123 * 110.67417 * 59.09896 * 6 5 3 24 24 C 1.52472 * 109.29932 * 302.42639 * 23 6 5 25 25 C 1.54314 * 110.00760 * 293.23710 * 24 23 6 26 26 C 1.55104 * 101.97175 * 220.68756 * 25 24 23 27 27 O 1.44433 * 103.55238 * 36.61480 * 26 25 24 28 28 C 1.43898 * 106.99599 * 320.26128 * 27 26 25 29 29 O 1.42316 * 110.82315 * 55.23942 * 24 23 6 30 30 H 1.08997 * 109.46859 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47059 * 299.99892 * 1 2 3 32 32 H 1.08997 * 109.46802 * 60.00318 * 1 2 3 33 33 H 1.09003 * 109.47270 * 239.99670 * 2 1 3 34 34 H 1.09002 * 109.47132 * 120.00339 * 2 1 3 35 35 H 1.09004 * 109.48633 * 62.76659 * 5 3 2 36 36 H 1.08994 * 109.50720 * 302.71676 * 5 3 2 37 37 H 1.09001 * 109.47551 * 179.97438 * 9 7 6 38 38 H 1.09003 * 109.47307 * 300.00230 * 9 7 6 39 39 H 1.09002 * 109.47575 * 59.99473 * 9 7 6 40 40 H 1.08998 * 109.46921 * 89.99095 * 13 12 10 41 41 H 1.08994 * 109.46996 * 209.99677 * 13 12 10 42 42 H 1.09001 * 109.46578 * 329.99540 * 13 12 10 43 43 H 1.09001 * 109.47567 * 210.00057 * 14 12 10 44 44 H 1.09005 * 109.47076 * 330.00563 * 14 12 10 45 45 H 0.96991 * 119.99957 * 180.02562 * 18 17 15 46 46 H 1.09002 * 109.50296 * 62.37269 * 23 6 5 47 47 H 1.09003 * 109.50360 * 182.47717 * 23 6 5 48 48 H 1.09006 * 110.93289 * 338.85654 * 25 24 23 49 49 H 1.09006 * 110.93364 * 102.51934 * 25 24 23 50 50 H 1.08995 * 110.60573 * 278.10035 * 26 25 24 51 51 H 1.08992 * 110.73738 * 155.19106 * 26 25 24 52 52 H 1.08996 * 109.90815 * 267.00311 * 28 27 26 53 53 H 1.08998 * 110.06055 * 145.82526 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6043 1.9827 -0.8405 5 6 3.5657 1.4455 -0.1257 6 7 4.0581 2.8293 -0.0596 7 6 5.5147 2.8792 -0.2438 8 1 5.8664 3.8984 -0.0841 9 6 6.1883 1.9436 0.7620 10 6 5.8591 2.4427 -1.6445 11 8 4.9779 2.1220 -2.4137 12 7 7.1459 2.4144 -2.0443 13 6 8.2103 2.8021 -1.1153 14 6 7.4803 1.9958 -3.4078 15 6 7.4880 3.1991 -4.3150 16 1 7.2663 4.1779 -3.9157 17 6 7.7779 3.0506 -5.6548 18 7 8.0473 1.8587 -6.1411 19 14 7.7881 4.5423 -6.7792 20 1 8.8001 5.5171 -6.2989 21 1 8.1269 4.1180 -8.1613 22 1 6.4459 5.1776 -6.7709 23 6 3.6654 3.4602 1.2102 24 6 2.1474 3.4157 1.3467 25 6 1.4944 4.3138 0.2751 26 6 0.3501 4.9892 1.0751 27 8 0.9275 5.1956 2.3828 28 6 1.7106 4.0271 2.6861 29 8 1.6674 2.0814 1.2255 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.8529 1.0027 -1.0795 36 1 3.9992 0.8661 0.6893 37 1 7.2691 1.9803 0.6251 38 1 5.9392 2.2592 1.7752 39 1 5.8366 0.9244 0.6024 40 1 8.5516 1.9242 -0.5669 41 1 9.0434 3.2278 -1.6746 42 1 7.8277 3.5430 -0.4133 43 1 8.4658 1.5302 -3.4136 44 1 6.7380 1.2797 -3.7604 45 1 8.2516 1.7543 -7.0835 46 1 4.1213 2.9211 2.0407 47 1 4.0014 4.4971 1.2206 48 1 2.2019 5.0561 -0.0947 49 1 1.0961 3.7155 -0.5445 50 1 -0.5154 4.3296 1.1376 51 1 0.0734 5.9417 0.6233 52 1 1.1070 3.3099 3.2422 53 1 2.5875 4.3060 3.2703 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331622654.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:05 Heat of formation + Delta-G solvation = -126.820170 kcal Electronic energy + Delta-G solvation = -32472.052101 eV Core-core repulsion = 28343.590507 eV Total energy + Delta-G solvation = -4128.461594 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.04275 -40.79147 -39.08506 -37.25283 -36.57247 -35.05755 -34.78266 -32.63000 -31.71356 -30.79157 -29.55290 -28.55811 -27.60166 -26.47478 -25.68376 -24.58148 -23.85034 -22.70434 -22.22452 -20.39414 -19.87590 -18.71801 -18.34275 -17.80502 -17.53099 -17.07253 -17.02536 -16.45600 -16.35877 -16.00754 -15.77784 -15.74642 -15.31271 -14.97641 -14.84609 -14.74877 -14.47081 -14.36310 -14.10384 -13.85550 -13.63628 -13.45215 -13.30750 -13.27761 -13.03945 -12.91700 -12.81819 -12.60823 -12.57313 -12.48988 -12.37384 -12.29061 -12.14645 -11.95422 -11.86443 -11.73850 -11.69640 -11.29206 -10.72657 -10.71700 -10.64618 -10.29800 -9.43331 -9.24236 -8.22742 -6.37504 1.35710 1.39867 1.47079 1.86237 2.18336 2.38999 2.47952 2.79852 2.94808 3.06713 3.43353 3.62700 3.66385 3.82805 3.85459 3.98063 4.03040 4.08674 4.13061 4.21554 4.24159 4.31135 4.35773 4.38731 4.49841 4.53822 4.60556 4.64417 4.69119 4.73433 4.75290 4.80169 4.80965 4.83381 4.90595 4.95572 5.00638 5.03377 5.06337 5.08644 5.18137 5.21893 5.22504 5.39255 5.56060 5.71812 5.80271 5.87583 5.97170 6.06350 6.23598 6.70390 6.81652 7.28837 7.52872 8.83871 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013208 B = 0.003065 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.356648 B = 9132.288794 C = 9267.531099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.102 3.898 4 H 0.052 0.948 5 C 0.025 3.975 6 N -0.528 5.528 7 C 0.076 3.924 8 H 0.122 0.878 9 C -0.186 4.186 10 C 0.502 3.498 11 O -0.577 6.577 12 N -0.610 5.610 13 C 0.076 3.924 14 C 0.263 3.737 15 C -0.542 4.542 16 H 0.052 0.948 17 C 0.009 3.991 18 N -0.929 5.929 19 Si 0.965 3.035 20 H -0.260 1.260 21 H -0.278 1.278 22 H -0.279 1.279 23 C 0.037 3.963 24 C 0.088 3.912 25 C -0.167 4.167 26 C 0.051 3.949 27 O -0.389 6.389 28 C 0.067 3.933 29 O -0.367 6.367 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.022 0.978 44 H -0.004 1.004 45 H 0.267 0.733 46 H 0.063 0.937 47 H 0.100 0.900 48 H 0.081 0.919 49 H 0.074 0.926 50 H 0.065 0.935 51 H 0.106 0.894 52 H 0.076 0.924 53 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.865 1.959 21.411 23.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C 0.044 3.956 4 H 0.070 0.930 5 C -0.103 4.103 6 N -0.252 5.252 7 C -0.035 4.035 8 H 0.140 0.860 9 C -0.244 4.244 10 C 0.290 3.710 11 O -0.457 6.457 12 N -0.342 5.342 13 C -0.066 4.066 14 C 0.142 3.858 15 C -0.581 4.581 16 H 0.070 0.930 17 C -0.190 4.190 18 N -0.568 5.568 19 Si 0.790 3.210 20 H -0.184 1.184 21 H -0.203 1.203 22 H -0.205 1.205 23 C -0.090 4.090 24 C 0.048 3.952 25 C -0.205 4.205 26 C -0.025 4.025 27 O -0.308 6.308 28 C -0.010 4.010 29 O -0.287 6.287 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.040 0.960 44 H 0.014 0.986 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.118 0.882 48 H 0.100 0.900 49 H 0.093 0.907 50 H 0.084 0.916 51 H 0.124 0.876 52 H 0.094 0.906 53 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.599 2.053 20.739 23.380 hybrid contribution 0.750 -0.162 -1.186 1.413 sum -9.848 1.891 19.552 21.974 Atomic orbital electron populations 1.21647 0.94092 1.02293 1.01859 1.21519 0.97610 0.92958 1.03011 1.22166 0.92367 0.94545 0.86531 0.92991 1.22832 0.96084 0.89541 1.01861 1.62015 1.10679 1.18232 1.34230 1.21578 0.88651 1.02243 0.91032 0.86006 1.22601 1.03413 0.99099 0.99312 1.21075 0.82079 0.77804 0.90088 1.90602 1.47977 1.50172 1.56915 1.48123 1.06623 1.65428 1.13999 1.22093 0.90648 1.00874 0.92980 1.18692 0.94347 0.94438 0.78336 1.21679 1.47619 0.94431 0.94365 0.92995 1.25835 0.94550 0.99121 0.99520 1.70039 1.48041 1.23929 1.14822 0.85504 0.78640 0.79224 0.77668 1.18402 1.20319 1.20494 1.22766 0.94677 1.01278 0.90275 1.22472 0.93033 0.83461 0.96247 1.23516 0.98792 0.99680 0.98548 1.23641 0.95217 1.01640 0.82037 1.88897 1.66590 1.39694 1.35624 1.23064 0.96815 0.87316 0.93815 1.87857 1.75791 1.25965 1.39037 0.91353 0.92255 0.93283 0.90742 0.90510 0.91052 0.93161 0.88819 0.89070 0.93071 0.90754 0.91655 0.88863 0.95953 0.98575 0.92418 0.91879 0.88173 0.89985 0.90716 0.91629 0.87591 0.90601 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.81 71.98 0.71 -1.97 16 2 C -0.11 -2.46 5.65 30.60 0.17 -2.29 16 3 C 0.10 2.61 2.52 30.62 0.08 2.69 16 4 H 0.05 1.54 6.40 -2.39 -0.02 1.52 16 5 C 0.02 0.71 3.91 86.31 0.34 1.05 16 6 N -0.53 -14.66 4.21 -875.34 -3.69 -18.35 16 7 C 0.08 2.12 1.93 44.17 0.09 2.20 16 8 H 0.12 2.91 7.31 -2.39 -0.02 2.89 16 9 C -0.19 -3.81 8.07 71.98 0.58 -3.23 16 10 C 0.50 20.50 6.78 87.66 0.59 21.09 16 11 O -0.58 -29.58 13.91 -3.04 -0.04 -29.62 16 12 N -0.61 -25.33 2.86 -851.12 -2.43 -27.77 16 13 C 0.08 2.16 8.81 127.77 1.13 3.28 16 14 C 0.26 14.17 5.16 85.63 0.44 14.62 16 15 C -0.54 -31.37 9.39 25.60 0.24 -31.13 16 16 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 17 C 0.01 0.50 5.46 84.66 0.46 0.97 16 18 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 19 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 C 0.04 0.77 3.76 86.09 0.32 1.09 16 24 C 0.09 1.85 0.99 -10.33 -0.01 1.84 16 25 C -0.17 -3.74 5.98 31.76 0.19 -3.55 16 26 C 0.05 0.97 7.73 72.70 0.56 1.53 16 27 O -0.39 -8.19 11.53 -148.98 -1.72 -9.90 16 28 C 0.07 1.18 7.19 72.18 0.52 1.70 16 29 O -0.37 -8.59 9.42 -148.98 -1.40 -9.99 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.13 7.83 -2.39 -0.02 1.11 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 2.64 5.84 -2.39 -0.01 2.63 16 36 H 0.05 1.31 6.39 -2.39 -0.02 1.29 16 37 H 0.09 1.70 4.55 -2.39 -0.01 1.69 16 38 H 0.09 1.37 6.70 -2.39 -0.02 1.36 16 39 H 0.05 1.20 6.39 -2.39 -0.02 1.19 16 40 H 0.07 1.71 6.97 -2.39 -0.02 1.70 16 41 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 42 H 0.09 1.98 6.00 -2.39 -0.01 1.96 16 43 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 44 H 0.00 -0.24 7.42 -2.38 -0.02 -0.26 16 45 H 0.27 15.23 8.31 -92.72 -0.77 14.46 16 46 H 0.06 1.08 6.67 -2.39 -0.02 1.07 16 47 H 0.10 1.82 8.01 -2.39 -0.02 1.80 16 48 H 0.08 1.95 7.77 -2.38 -0.02 1.93 16 49 H 0.07 1.88 6.21 -2.38 -0.01 1.87 16 50 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 52 H 0.08 1.31 7.96 -2.39 -0.02 1.29 16 53 H 0.12 1.54 7.68 -2.39 -0.02 1.52 16 Total: -1.00 -74.72 396.42 0.33 -74.39 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.90 Total: 20.28 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 6.41 Total: 9.89 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -5.84 Total: -102.20 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -3.16 Total: -49.52 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -74.72 0.33 -74.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331622654.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.425 kcal (2) G-P(sol) polarization free energy of solvation -74.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds