Wall clock time and date at job start Sat Apr 11 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 120.00140 * 2 1 4 4 C 1.50705 * 109.46868 * 269.99540 * 3 2 1 5 5 H 1.07991 * 120.00035 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99789 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00026 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99746 * 179.97438 * 6 4 3 9 9 H 1.48492 * 109.47375 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46700 * 120.00629 * 8 6 4 11 11 H 1.48495 * 109.47369 * 240.00079 * 8 6 4 12 12 C 1.34778 * 119.99762 * 179.97438 * 2 1 3 13 13 O 1.21282 * 120.00118 * 179.97438 * 12 2 1 14 14 C 1.50701 * 119.99786 * 0.02562 * 12 2 1 15 15 C 1.53004 * 109.47085 * 179.97438 * 14 12 2 16 16 C 1.53346 * 109.41904 * 295.13082 * 15 14 12 17 17 C 1.53195 * 109.14901 * 178.67276 * 16 15 14 18 18 N 1.46919 * 108.89273 * 54.57640 * 17 16 15 19 19 C 1.34778 * 120.63255 * 126.34238 * 18 17 16 20 20 O 1.21514 * 119.99756 * 359.97438 * 19 18 17 21 21 O 1.34636 * 120.00135 * 179.97438 * 19 18 17 22 22 C 1.45208 * 116.99983 * 179.97438 * 21 19 18 23 23 C 1.53004 * 109.46779 * 60.00283 * 22 21 19 24 24 C 1.53001 * 109.46807 * 180.02562 * 22 21 19 25 25 C 1.52998 * 109.46984 * 300.00006 * 22 21 19 26 26 C 1.46933 * 118.74003 * 306.32349 * 18 17 16 27 27 C 1.53034 * 109.46014 * 174.99948 * 15 14 12 28 28 H 1.08997 * 109.47354 * 270.00726 * 1 2 3 29 29 H 1.09004 * 109.47053 * 29.99749 * 1 2 3 30 30 H 1.08994 * 109.47416 * 150.00369 * 1 2 3 31 31 H 1.08997 * 109.47241 * 30.00150 * 3 2 1 32 32 H 1.09002 * 109.46951 * 150.00161 * 3 2 1 33 33 H 0.97000 * 119.99803 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47447 * 60.00040 * 14 12 2 35 35 H 1.08997 * 109.47449 * 299.99758 * 14 12 2 36 36 H 1.09001 * 109.45799 * 55.03110 * 15 14 12 37 37 H 1.08997 * 109.68637 * 58.70485 * 16 15 14 38 38 H 1.09002 * 109.47277 * 298.50741 * 16 15 14 39 39 H 1.09002 * 109.58720 * 294.71670 * 17 16 15 40 40 H 1.08996 * 109.58651 * 174.43567 * 17 16 15 41 41 H 1.08997 * 109.47283 * 60.00046 * 23 22 21 42 42 H 1.08999 * 109.46530 * 179.97438 * 23 22 21 43 43 H 1.09002 * 109.47087 * 299.99777 * 23 22 21 44 44 H 1.08991 * 109.47427 * 59.99908 * 24 22 21 45 45 H 1.08999 * 109.46544 * 180.02562 * 24 22 21 46 46 H 1.09005 * 109.46960 * 299.99932 * 24 22 21 47 47 H 1.09002 * 109.47165 * 60.00049 * 25 22 21 48 48 H 1.08999 * 109.46767 * 179.97438 * 25 22 21 49 49 H 1.08997 * 109.47507 * 299.99772 * 25 22 21 50 50 H 1.08994 * 109.58580 * 173.39910 * 26 18 17 51 51 H 1.09006 * 109.57831 * 293.67403 * 26 18 17 52 52 H 1.08994 * 109.50232 * 61.43679 * 27 15 14 53 53 H 1.09007 * 109.52628 * 301.35340 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0975 1.0960 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.5534 3.6180 -0.6732 8 14 3.4382 3.4165 -3.4340 9 1 2.8612 2.4160 -4.3674 10 1 2.8002 4.7370 -3.6681 11 1 4.9007 3.5253 -3.6667 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0001 14 6 1.3852 -2.4723 0.0005 15 6 2.3794 -3.6353 0.0005 16 6 3.1775 -3.6238 -1.3088 17 6 4.1935 -4.7702 -1.2881 18 7 3.4846 -6.0294 -1.0228 19 6 3.6263 -7.0846 -1.8491 20 8 4.3456 -6.9999 -2.8248 21 8 2.9711 -8.2327 -1.5935 22 6 3.1705 -9.3273 -2.5264 23 6 4.6539 -9.7005 -2.5651 24 6 2.3512 -10.5380 -2.0748 25 6 2.7162 -8.8967 -3.9225 26 6 2.6183 -6.1166 0.1609 27 6 1.6180 -4.9569 0.1263 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5137 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1383 0.5138 33 1 4.0302 4.4438 -0.8505 34 1 0.7589 -2.5302 -0.8897 35 1 0.7582 -2.5299 0.8903 36 1 3.0631 -3.5286 0.8427 37 1 3.7027 -2.6741 -1.4103 38 1 2.4973 -3.7557 -2.1502 39 1 4.9290 -4.5926 -0.5035 40 1 4.6962 -4.8303 -2.2534 41 1 4.9774 -10.0072 -1.5706 42 1 4.8035 -10.5225 -3.2651 43 1 5.2372 -8.8378 -2.8871 44 1 1.2946 -10.2719 -2.0474 45 1 2.5013 -11.3598 -2.7749 46 1 2.6744 -10.8448 -1.0800 47 1 3.2996 -8.0341 -4.2445 48 1 2.8664 -9.7183 -4.6229 49 1 1.6595 -8.6309 -3.8949 50 1 2.0798 -7.0641 0.1505 51 1 3.2258 -6.0513 1.0636 52 1 0.9524 -5.0761 -0.7285 53 1 1.0326 -4.9540 1.0458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361330198.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:27 Heat of formation + Delta-G solvation = -148.407808 kcal Electronic energy + Delta-G solvation = -30968.016848 eV Core-core repulsion = 26838.619143 eV Total energy + Delta-G solvation = -4129.397704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.95577 -40.85366 -39.42916 -37.67613 -36.54133 -35.36303 -34.75642 -34.36797 -32.04555 -30.69502 -29.08288 -28.35059 -28.26336 -27.23084 -25.77436 -24.59788 -24.12455 -22.70229 -21.26297 -20.19299 -19.82749 -18.94709 -18.68234 -17.70745 -17.60852 -17.24728 -17.07323 -16.47685 -16.26963 -16.04706 -15.53561 -15.45690 -15.24155 -14.85245 -14.67467 -14.46132 -14.35672 -14.16738 -13.82880 -13.77000 -13.42528 -13.34454 -13.14389 -13.08694 -13.06623 -12.85693 -12.84043 -12.81591 -12.61827 -12.57071 -12.44448 -12.29312 -12.20721 -12.13921 -11.83141 -11.67519 -11.57626 -11.37174 -11.33388 -11.02948 -10.65455 -10.39008 -9.76137 -9.34510 -8.22738 -6.37299 1.12588 1.34471 1.37112 1.48573 1.75408 1.94591 2.33949 2.52560 2.85020 3.06396 3.70776 3.76154 3.78954 3.80611 3.83047 3.97375 4.03973 4.15352 4.28179 4.36170 4.46633 4.53720 4.59972 4.62797 4.63191 4.68526 4.76015 4.77446 4.78313 4.83049 4.85666 4.90470 4.90690 4.91509 4.99275 5.05972 5.09218 5.12112 5.15855 5.22588 5.26860 5.29922 5.36218 5.47689 5.50484 5.57544 5.60450 5.88163 6.07333 6.34461 6.71373 6.87700 7.27697 7.29520 7.58492 8.83986 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017566 B = 0.002297 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.602445 B =12187.133873 C =13038.916148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.616 5.616 3 C 0.259 3.741 4 C -0.538 4.538 5 H 0.051 0.949 6 C 0.006 3.994 7 N -0.928 5.928 8 Si 0.965 3.035 9 H -0.268 1.268 10 H -0.269 1.269 11 H -0.282 1.282 12 C 0.490 3.510 13 O -0.590 6.590 14 C -0.120 4.120 15 C -0.067 4.067 16 C -0.128 4.128 17 C 0.136 3.864 18 N -0.593 5.593 19 C 0.647 3.353 20 O -0.600 6.600 21 O -0.361 6.361 22 C 0.124 3.876 23 C -0.180 4.180 24 C -0.133 4.133 25 C -0.180 4.180 26 C 0.109 3.891 27 C -0.117 4.117 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.020 0.980 32 H -0.002 1.002 33 H 0.266 0.734 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.071 0.929 47 H 0.056 0.944 48 H 0.090 0.910 49 H 0.062 0.938 50 H 0.105 0.895 51 H 0.080 0.920 52 H 0.071 0.929 53 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.295 -29.037 1.217 30.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.348 5.348 3 C 0.137 3.863 4 C -0.576 4.576 5 H 0.069 0.931 6 C -0.193 4.193 7 N -0.568 5.568 8 Si 0.790 3.210 9 H -0.192 1.192 10 H -0.194 1.194 11 H -0.208 1.208 12 C 0.280 3.720 13 O -0.472 6.472 14 C -0.160 4.160 15 C -0.086 4.086 16 C -0.166 4.166 17 C 0.015 3.985 18 N -0.333 5.333 19 C 0.402 3.598 20 O -0.491 6.491 21 O -0.276 6.276 22 C 0.088 3.912 23 C -0.237 4.237 24 C -0.190 4.190 25 C -0.237 4.237 26 C -0.012 4.012 27 C -0.155 4.155 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.038 0.962 32 H 0.016 0.984 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.142 0.858 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.119 0.881 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.108 0.892 49 H 0.081 0.919 50 H 0.123 0.877 51 H 0.099 0.901 52 H 0.090 0.910 53 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.416 -28.921 0.953 30.136 hybrid contribution 0.836 1.276 -0.960 1.802 sum -7.581 -27.645 -0.007 28.666 Atomic orbital electron populations 1.21911 0.78058 1.03834 1.02530 1.48243 1.08349 1.06555 1.71616 1.18708 0.91100 0.80719 0.95767 1.21718 1.36462 1.06317 0.93125 0.93083 1.25849 0.95076 0.96553 1.01797 1.70056 1.39089 1.14838 1.32863 0.85401 0.77848 0.78412 0.79350 1.19236 1.19379 1.20840 1.21542 0.88049 0.86669 0.75720 1.90604 1.16497 1.88012 1.52040 1.21772 0.98851 0.89286 1.06043 1.20915 0.96324 0.93929 0.97423 1.22044 0.98419 0.97886 0.98289 1.21480 0.94124 0.80684 1.02247 1.47150 1.48963 1.10457 1.26729 1.18159 0.78789 0.81186 0.81623 1.90881 1.43834 1.83906 1.30515 1.86289 1.66211 1.20953 1.54150 1.22418 0.96913 0.84055 0.87859 1.22467 0.94989 1.03078 1.03144 1.21865 0.99831 0.94063 1.03250 1.22468 1.01711 1.03473 0.96058 1.21949 0.92190 1.00657 0.86391 1.21942 0.97384 0.91645 1.04545 0.91073 0.92109 0.88659 0.96201 0.98416 0.92459 0.87628 0.85813 0.91348 0.91650 0.92350 0.90816 0.90632 0.91865 0.89151 0.92450 0.91000 0.88116 0.91003 0.92515 0.89161 0.91898 0.87697 0.90124 0.90996 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.25 10.24 127.77 1.31 3.55 16 2 N -0.62 -25.55 2.86 -851.14 -2.43 -27.98 16 3 C 0.26 14.01 5.16 85.64 0.44 14.45 16 4 C -0.54 -31.25 9.39 25.60 0.24 -31.01 16 5 H 0.05 2.95 7.81 -2.92 -0.02 2.93 16 6 C 0.01 0.35 5.46 84.65 0.46 0.81 16 7 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 8 Si 0.97 45.64 29.54 68.60 2.03 47.67 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 C 0.49 19.26 7.38 87.66 0.65 19.91 16 13 O -0.59 -29.04 13.54 -3.03 -0.04 -29.08 16 14 C -0.12 -2.90 3.73 29.85 0.11 -2.79 16 15 C -0.07 -1.56 1.80 -10.66 -0.02 -1.58 16 16 C -0.13 -3.71 5.13 30.78 0.16 -3.55 16 17 C 0.14 3.73 6.42 86.36 0.55 4.28 16 18 N -0.59 -14.09 2.97 -949.25 -2.82 -16.91 16 19 C 0.65 17.13 7.74 129.79 1.00 18.13 16 20 O -0.60 -19.25 11.29 19.80 0.22 -19.03 16 21 O -0.36 -7.77 8.53 -55.46 -0.47 -8.25 16 22 C 0.12 2.13 1.13 -10.79 -0.01 2.12 16 23 C -0.18 -3.16 8.37 71.98 0.60 -2.56 16 24 C -0.13 -1.32 8.85 71.98 0.64 -0.68 16 25 C -0.18 -3.23 8.37 71.98 0.60 -2.63 16 26 C 0.11 1.80 6.45 86.36 0.56 2.36 16 27 C -0.12 -1.77 5.36 30.67 0.16 -1.60 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.88 8.07 -2.39 -0.02 1.86 16 30 H 0.09 1.98 6.44 -2.39 -0.02 1.96 16 31 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 32 H 0.00 -0.14 7.42 -2.39 -0.02 -0.16 16 33 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.11 2.20 7.40 -2.39 -0.02 2.19 16 35 H 0.12 2.12 8.11 -2.39 -0.02 2.10 16 36 H 0.07 1.81 7.96 -2.39 -0.02 1.79 16 37 H 0.06 2.47 5.94 -2.39 -0.01 2.46 16 38 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.08 2.32 7.00 -2.39 -0.02 2.30 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 1.40 5.88 -2.39 -0.01 1.39 16 44 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 47 H 0.06 1.41 5.88 -2.39 -0.01 1.40 16 48 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.10 1.45 6.93 -2.39 -0.02 1.43 16 51 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 52 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 53 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -79.53 411.39 5.10 -74.43 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.87 Total: 16.39 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 7.46 Total: 19.21 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -4.97 Total: -101.35 kcal Atomic # 8 Polarization: -56.06 SS G_CDS: -0.29 Total: -56.35 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -79.53 5.10 -74.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361330198.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.980 kcal (2) G-P(sol) polarization free energy of solvation -79.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds