Wall clock time and date at job start Sat Apr 11 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47418 * 2 1 4 4 H 1.09000 * 110.55341 * 307.88284 * 3 2 1 5 5 C 1.54998 * 110.61919 * 184.99851 * 3 2 1 6 6 C 1.54810 * 102.09295 * 204.47621 * 5 3 2 7 7 C 1.54108 * 104.18568 * 20.88115 * 6 5 3 8 8 H 1.09005 * 109.87714 * 242.45036 * 7 6 5 9 9 C 1.50703 * 109.87750 * 121.45494 * 7 6 5 10 10 O 1.21281 * 119.99837 * 244.99625 * 9 7 6 11 11 N 1.34781 * 120.00021 * 64.99988 * 9 7 6 12 12 C 1.46504 * 119.99832 * 359.97438 * 11 9 7 13 13 C 1.50695 * 109.47420 * 270.00196 * 12 11 9 14 14 H 1.08004 * 119.99994 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00109 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99647 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99790 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47309 * 89.99865 * 17 15 13 19 19 H 1.48507 * 109.46782 * 209.99997 * 17 15 13 20 20 H 1.48497 * 109.47264 * 329.99637 * 17 15 13 21 21 C 1.46499 * 119.99786 * 180.02562 * 11 9 7 22 22 C 1.53000 * 109.46840 * 269.99584 * 21 11 9 23 23 N 1.46901 * 109.46769 * 180.02562 * 22 21 11 24 24 C 1.47006 * 111.00285 * 293.63568 * 23 22 21 25 25 C 1.53101 * 109.26190 * 177.60744 * 24 23 22 26 26 O 1.43020 * 109.25617 * 56.84928 * 25 24 23 27 27 C 1.43021 * 113.73919 * 301.33283 * 26 25 24 28 28 C 1.47016 * 110.99837 * 170.00057 * 23 22 21 29 29 O 1.43737 * 107.29514 * 2.02843 * 7 6 5 30 30 H 1.09001 * 109.47379 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47177 * 300.00437 * 1 2 3 32 32 H 1.09005 * 109.47066 * 59.99666 * 1 2 3 33 33 H 1.09000 * 109.47179 * 240.00119 * 2 1 3 34 34 H 1.09005 * 109.47066 * 120.00334 * 2 1 3 35 35 H 1.08994 * 110.90709 * 86.28138 * 5 3 2 36 36 H 1.08999 * 110.90795 * 322.67284 * 5 3 2 37 37 H 1.08997 * 110.48990 * 262.21089 * 6 5 3 38 38 H 1.08992 * 110.49249 * 139.55528 * 6 5 3 39 39 H 1.08999 * 109.47380 * 30.00717 * 12 11 9 40 40 H 1.09001 * 109.46721 * 150.00109 * 12 11 9 41 41 H 0.97006 * 119.99665 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.46813 * 149.99858 * 21 11 9 43 43 H 1.08992 * 109.47397 * 29.99919 * 21 11 9 44 44 H 1.09002 * 109.47398 * 300.00326 * 22 21 11 45 45 H 1.09001 * 109.47194 * 60.00507 * 22 21 11 46 46 H 1.08998 * 109.50801 * 297.54617 * 24 23 22 47 47 H 1.08998 * 109.50572 * 57.67603 * 24 23 22 48 48 H 1.09002 * 109.50522 * 296.91967 * 25 24 23 49 49 H 1.08993 * 109.54601 * 176.80294 * 25 24 23 50 50 H 1.08998 * 109.50602 * 298.73794 * 27 26 25 51 51 H 1.08994 * 109.53960 * 178.62819 * 27 26 25 52 52 H 1.08996 * 109.50975 * 302.32925 * 28 23 22 53 53 H 1.08998 * 109.50488 * 62.45680 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5767 2.0122 -0.8055 5 6 3.5845 1.4752 -0.1264 6 6 3.9334 2.8407 0.5142 7 6 2.7073 3.1728 1.3867 8 1 2.2334 4.0865 1.0277 9 6 3.1318 3.3461 2.8223 10 8 2.7399 2.5706 3.6684 11 7 3.9469 4.3630 3.1660 12 6 4.4206 5.2996 2.1438 13 6 5.7140 4.7933 1.5593 14 1 6.1404 3.8663 1.9135 15 6 6.3532 5.5134 0.5724 16 7 5.8337 6.6419 0.1409 17 14 7.9561 4.8853 -0.1526 18 1 7.6642 4.0168 -1.3211 19 1 8.7876 6.0366 -0.5869 20 1 8.6909 4.1034 0.8739 21 6 4.3600 4.5311 4.5614 22 6 3.3555 5.4295 5.2859 23 7 3.7701 5.5985 6.6850 24 6 3.6837 4.3268 7.4175 25 6 4.1801 4.5348 8.8508 26 8 3.4118 5.5698 9.4705 27 6 3.4737 6.8227 8.7836 28 6 2.9702 6.6378 7.3496 29 8 1.7932 2.0690 1.2772 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8898 1.4470 -1.1723 36 1 4.0380 0.6564 0.4321 37 1 4.0702 3.5997 -0.2560 38 1 4.8283 2.7555 1.1305 39 1 3.6738 5.3843 1.3545 40 1 4.5844 6.2780 2.5955 41 1 6.2832 7.1483 -0.5537 42 1 5.3481 4.9901 4.5950 43 1 4.3949 3.5574 5.0499 44 1 3.3206 6.4033 4.7975 45 1 2.3674 4.9705 5.2523 46 1 2.6481 3.9874 7.4366 47 1 4.3034 3.5791 6.9227 48 1 5.2313 4.8225 8.8337 49 1 4.0651 3.6091 9.4144 50 1 4.5044 7.1768 8.7645 51 1 2.8478 7.5518 9.2980 52 1 3.0691 7.5769 6.8053 53 1 1.9232 6.3353 7.3676 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362499807.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:41 Heat of formation + Delta-G solvation = -124.761457 kcal Electronic energy + Delta-G solvation = -31662.998249 eV Core-core repulsion = 27534.625928 eV Total energy + Delta-G solvation = -4128.372321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.00186 -39.48560 -38.12139 -36.04830 -34.91771 -33.44538 -32.68432 -31.63099 -31.23155 -30.01326 -28.16443 -27.33197 -25.89064 -24.05331 -23.83762 -23.04658 -21.92077 -21.11211 -20.72433 -20.32234 -18.53153 -16.70975 -16.68487 -16.55286 -16.16090 -16.03338 -15.83512 -15.15344 -15.06758 -14.88187 -14.70504 -14.51716 -14.12446 -13.67781 -13.49168 -13.44849 -13.25618 -12.94723 -12.67147 -12.59237 -12.40767 -12.31709 -11.98064 -11.65938 -11.51367 -11.42202 -11.29420 -11.20527 -11.11462 -11.04490 -10.86304 -10.71895 -10.67866 -10.52071 -10.35259 -10.31074 -10.05672 -9.76876 -9.64678 -9.55225 -8.80940 -8.57386 -8.35321 -7.79620 -6.25616 -4.30931 3.16534 3.25227 3.26804 3.31518 3.46029 3.78312 3.97117 4.25215 4.47282 4.84870 4.87582 4.99589 5.01681 5.01862 5.07793 5.12252 5.21507 5.26304 5.34457 5.37526 5.42764 5.50463 5.52431 5.55781 5.59439 5.62395 5.65467 5.76293 5.83514 5.92449 5.95333 5.96041 5.97084 6.02293 6.06122 6.20009 6.24976 6.31410 6.40051 6.41795 6.64569 6.64798 6.88821 6.97872 7.00588 7.09117 7.09998 7.26866 7.52254 7.68259 7.96326 8.24744 8.70562 8.96701 9.34440 10.81008 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008112 B = 0.003846 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3450.790166 B = 7279.082634 C = 9995.980013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.073 3.927 4 H 0.067 0.933 5 C -0.155 4.155 6 C -0.132 4.132 7 C 0.069 3.931 8 H 0.087 0.913 9 C 0.518 3.482 10 O -0.557 6.557 11 N -0.594 5.594 12 C 0.236 3.764 13 C -0.532 4.532 14 H 0.063 0.937 15 C 0.068 3.932 16 N -0.889 5.889 17 Si 0.891 3.109 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.128 3.872 22 C 0.044 3.956 23 N -0.533 5.533 24 C 0.015 3.985 25 C 0.065 3.935 26 O -0.390 6.390 27 C 0.065 3.935 28 C 0.018 3.982 29 O -0.351 6.351 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.265 0.735 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.036 0.964 46 H 0.043 0.957 47 H 0.091 0.909 48 H 0.060 0.940 49 H 0.096 0.904 50 H 0.060 0.940 51 H 0.095 0.905 52 H 0.086 0.914 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.213 -3.860 5.608 8.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.015 3.985 4 H 0.085 0.915 5 C -0.192 4.192 6 C -0.170 4.170 7 C 0.009 3.991 8 H 0.104 0.896 9 C 0.305 3.695 10 O -0.436 6.436 11 N -0.327 5.327 12 C 0.116 3.884 13 C -0.571 4.571 14 H 0.081 0.919 15 C -0.135 4.135 16 N -0.527 5.527 17 Si 0.718 3.282 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.198 1.198 21 C 0.004 3.996 22 C -0.085 4.085 23 N -0.258 5.258 24 C -0.113 4.113 25 C -0.012 4.012 26 O -0.308 6.308 27 C -0.012 4.012 28 C -0.110 4.110 29 O -0.270 6.270 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.109 0.891 48 H 0.078 0.922 49 H 0.114 0.886 50 H 0.078 0.922 51 H 0.113 0.887 52 H 0.105 0.895 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.156 -4.031 6.237 9.041 hybrid contribution 0.410 -0.153 -1.113 1.196 sum -4.746 -4.184 5.124 8.142 Atomic orbital electron populations 1.21733 0.95591 1.01165 1.02209 1.21533 0.96408 0.94865 1.02486 1.23196 0.94775 0.93830 0.86657 0.91474 1.23259 0.95443 0.99034 1.01498 1.23100 0.98218 0.95975 0.99680 1.22496 0.91576 0.91207 0.93853 0.89582 1.20370 0.78557 0.80622 0.89947 1.90599 1.56613 1.44535 1.51852 1.48134 1.46876 1.28981 1.08681 1.19502 0.95037 0.88229 0.85644 1.21415 1.06957 1.08083 1.20609 0.91875 1.24876 0.97555 0.94680 0.96437 1.69913 1.39499 1.14195 1.29092 0.86600 0.83462 0.78563 0.79564 1.20397 1.21088 1.19751 1.21162 0.97645 0.99298 0.81521 1.22517 0.97725 1.01040 0.87208 1.62147 1.54551 1.06870 1.02261 1.22841 1.01042 0.92509 0.94955 1.22684 0.95208 0.91149 0.92198 1.87953 1.71284 1.20113 1.51468 1.22649 1.01372 0.86025 0.91156 1.22769 0.95763 0.96645 0.95864 1.88918 1.56925 1.44935 1.36220 0.93073 0.91969 0.93031 0.90985 0.91066 0.90556 0.90979 0.89038 0.87865 0.94511 0.94417 0.92474 0.89446 0.91090 0.90345 0.94569 0.93908 0.89073 0.92198 0.88606 0.92201 0.88686 0.89538 0.94148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.86 37.16 0.37 -1.39 16 2 C -0.12 -1.47 5.69 -26.74 -0.15 -1.62 16 3 C 0.07 1.10 3.29 -25.68 -0.08 1.02 16 4 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 5 C -0.15 -2.37 6.59 -24.72 -0.16 -2.54 16 6 C -0.13 -2.44 4.49 -25.20 -0.11 -2.55 16 7 C 0.07 1.35 2.98 -27.30 -0.08 1.26 16 8 H 0.09 1.63 7.20 -51.93 -0.37 1.25 16 9 C 0.52 11.02 6.87 -10.98 -0.08 10.94 16 10 O -0.56 -13.15 16.11 -14.02 -0.23 -13.38 16 11 N -0.59 -12.10 2.46 -175.06 -0.43 -12.53 16 12 C 0.24 5.22 4.73 -5.19 -0.02 5.19 16 13 C -0.53 -12.63 6.48 -34.44 -0.22 -12.85 16 14 H 0.06 1.54 6.89 -52.48 -0.36 1.17 16 15 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -23.02 13.29 55.43 0.74 -22.28 16 17 Si 0.89 19.43 29.54 -169.99 -5.02 14.41 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 C 0.13 2.33 5.34 -4.04 -0.02 2.31 16 22 C 0.04 0.72 5.28 -3.82 -0.02 0.70 16 23 N -0.53 -7.67 4.73 -234.31 -1.11 -8.78 16 24 C 0.01 0.20 5.44 -3.71 -0.02 0.18 16 25 C 0.06 0.76 7.01 37.21 0.26 1.02 16 26 O -0.39 -5.05 10.83 -35.23 -0.38 -5.43 16 27 C 0.07 0.72 7.01 37.21 0.26 0.98 16 28 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 29 O -0.35 -6.68 10.30 -54.81 -0.56 -7.25 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 37 H 0.09 1.76 7.97 -51.93 -0.41 1.34 16 38 H 0.10 2.12 5.18 -51.93 -0.27 1.85 16 39 H 0.04 0.84 6.19 -51.93 -0.32 0.52 16 40 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 41 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 42 H 0.09 1.62 8.07 -51.93 -0.42 1.20 16 43 H 0.07 1.33 5.80 -51.93 -0.30 1.03 16 44 H 0.08 1.28 8.04 -51.93 -0.42 0.87 16 45 H 0.04 0.65 8.12 -51.93 -0.42 0.22 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.09 1.26 6.38 -51.93 -0.33 0.93 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 50 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 52 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 53 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 408.85 15.07 6.16 6.16 Total: -1.00 -28.40 408.85 -10.56 -38.96 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -9.51 Total: 5.69 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -0.21 Total: 4.42 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.80 Total: -43.59 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -1.17 Total: -26.06 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -28.40 -10.56 -38.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362499807.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.800 kcal (2) G-P(sol) polarization free energy of solvation -28.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds