Wall clock time and date at job start Sat Apr 11 2020 06:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47418 * 2 1 4 4 H 1.09000 * 110.55341 * 307.88284 * 3 2 1 5 5 C 1.54998 * 110.61919 * 184.99851 * 3 2 1 6 6 C 1.54810 * 102.09295 * 204.47621 * 5 3 2 7 7 C 1.54108 * 104.18568 * 20.88115 * 6 5 3 8 8 H 1.09005 * 109.87714 * 242.45036 * 7 6 5 9 9 C 1.50703 * 109.87750 * 121.45494 * 7 6 5 10 10 O 1.21281 * 119.99837 * 244.99625 * 9 7 6 11 11 N 1.34781 * 120.00021 * 64.99988 * 9 7 6 12 12 C 1.46504 * 119.99832 * 359.97438 * 11 9 7 13 13 C 1.50695 * 109.47420 * 270.00196 * 12 11 9 14 14 H 1.08004 * 119.99994 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00109 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99647 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99790 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47309 * 89.99865 * 17 15 13 19 19 H 1.48507 * 109.46782 * 209.99997 * 17 15 13 20 20 H 1.48497 * 109.47264 * 329.99637 * 17 15 13 21 21 C 1.46499 * 119.99786 * 180.02562 * 11 9 7 22 22 C 1.53000 * 109.46840 * 269.99584 * 21 11 9 23 23 N 1.46901 * 109.46769 * 180.02562 * 22 21 11 24 24 C 1.47006 * 111.00285 * 293.63568 * 23 22 21 25 25 C 1.53101 * 109.26190 * 177.60744 * 24 23 22 26 26 O 1.43020 * 109.25617 * 56.84928 * 25 24 23 27 27 C 1.43021 * 113.73919 * 301.33283 * 26 25 24 28 28 C 1.47016 * 110.99837 * 170.00057 * 23 22 21 29 29 O 1.43737 * 107.29514 * 2.02843 * 7 6 5 30 30 H 1.09001 * 109.47379 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47177 * 300.00437 * 1 2 3 32 32 H 1.09005 * 109.47066 * 59.99666 * 1 2 3 33 33 H 1.09000 * 109.47179 * 240.00119 * 2 1 3 34 34 H 1.09005 * 109.47066 * 120.00334 * 2 1 3 35 35 H 1.08994 * 110.90709 * 86.28138 * 5 3 2 36 36 H 1.08999 * 110.90795 * 322.67284 * 5 3 2 37 37 H 1.08997 * 110.48990 * 262.21089 * 6 5 3 38 38 H 1.08992 * 110.49249 * 139.55528 * 6 5 3 39 39 H 1.08999 * 109.47380 * 30.00717 * 12 11 9 40 40 H 1.09001 * 109.46721 * 150.00109 * 12 11 9 41 41 H 0.97006 * 119.99665 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.46813 * 149.99858 * 21 11 9 43 43 H 1.08992 * 109.47397 * 29.99919 * 21 11 9 44 44 H 1.09002 * 109.47398 * 300.00326 * 22 21 11 45 45 H 1.09001 * 109.47194 * 60.00507 * 22 21 11 46 46 H 1.08998 * 109.50801 * 297.54617 * 24 23 22 47 47 H 1.08998 * 109.50572 * 57.67603 * 24 23 22 48 48 H 1.09002 * 109.50522 * 296.91967 * 25 24 23 49 49 H 1.08993 * 109.54601 * 176.80294 * 25 24 23 50 50 H 1.08998 * 109.50602 * 298.73794 * 27 26 25 51 51 H 1.08994 * 109.53960 * 178.62819 * 27 26 25 52 52 H 1.08996 * 109.50975 * 302.32925 * 28 23 22 53 53 H 1.08998 * 109.50488 * 62.45680 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5767 2.0122 -0.8055 5 6 3.5845 1.4752 -0.1264 6 6 3.9334 2.8407 0.5142 7 6 2.7073 3.1728 1.3867 8 1 2.2334 4.0865 1.0277 9 6 3.1318 3.3461 2.8223 10 8 2.7399 2.5706 3.6684 11 7 3.9469 4.3630 3.1660 12 6 4.4206 5.2996 2.1438 13 6 5.7140 4.7933 1.5593 14 1 6.1404 3.8663 1.9135 15 6 6.3532 5.5134 0.5724 16 7 5.8337 6.6419 0.1409 17 14 7.9561 4.8853 -0.1526 18 1 7.6642 4.0168 -1.3211 19 1 8.7876 6.0366 -0.5869 20 1 8.6909 4.1034 0.8739 21 6 4.3600 4.5311 4.5614 22 6 3.3555 5.4295 5.2859 23 7 3.7701 5.5985 6.6850 24 6 3.6837 4.3268 7.4175 25 6 4.1801 4.5348 8.8508 26 8 3.4118 5.5698 9.4705 27 6 3.4737 6.8227 8.7836 28 6 2.9702 6.6378 7.3496 29 8 1.7932 2.0690 1.2772 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8898 1.4470 -1.1723 36 1 4.0380 0.6564 0.4321 37 1 4.0702 3.5997 -0.2560 38 1 4.8283 2.7555 1.1305 39 1 3.6738 5.3843 1.3545 40 1 4.5844 6.2780 2.5955 41 1 6.2832 7.1483 -0.5537 42 1 5.3481 4.9901 4.5950 43 1 4.3949 3.5574 5.0499 44 1 3.3206 6.4033 4.7975 45 1 2.3674 4.9705 5.2523 46 1 2.6481 3.9874 7.4366 47 1 4.3034 3.5791 6.9227 48 1 5.2313 4.8225 8.8337 49 1 4.0651 3.6091 9.4144 50 1 4.5044 7.1768 8.7645 51 1 2.8478 7.5518 9.2980 52 1 3.0691 7.5769 6.8053 53 1 1.9232 6.3353 7.3676 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362499807.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:40 Heat of formation + Delta-G solvation = -141.479840 kcal Electronic energy + Delta-G solvation = -31663.723213 eV Core-core repulsion = 27534.625928 eV Total energy + Delta-G solvation = -4129.097285 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.54522 -40.57551 -39.59755 -37.40385 -36.50636 -34.61266 -34.47012 -33.06905 -32.23691 -31.37839 -29.48473 -29.07648 -27.16210 -25.18558 -25.04038 -24.82541 -23.22787 -22.51666 -21.88733 -21.40783 -20.18287 -18.51939 -18.20801 -17.88164 -17.47433 -17.35757 -17.09190 -16.42640 -16.37130 -16.18799 -15.99016 -15.91314 -15.46004 -15.09654 -14.73493 -14.66045 -14.51020 -14.29393 -14.24076 -14.13149 -13.82116 -13.55527 -13.40846 -13.11499 -12.89432 -12.68774 -12.64525 -12.58385 -12.51304 -12.36464 -12.33844 -12.18883 -11.90308 -11.80720 -11.77672 -11.55654 -11.50252 -11.35594 -11.00765 -10.73834 -10.60438 -10.32512 -9.63282 -9.45925 -8.16487 -6.26500 1.43214 1.47400 1.54148 1.62502 1.93153 2.43919 2.69597 2.92441 3.07037 3.15130 3.54882 3.69815 3.78297 3.87366 3.94280 3.95982 3.96039 4.08000 4.15911 4.19303 4.27625 4.29418 4.36420 4.38884 4.41618 4.43323 4.55138 4.63709 4.68628 4.73519 4.78625 4.82180 4.85535 4.88071 4.93863 4.96734 4.99138 4.99676 5.08054 5.19365 5.21881 5.24578 5.33752 5.43629 5.60839 5.75465 5.84936 5.88518 5.98177 6.06776 6.13841 6.49287 6.80661 7.23600 7.42464 8.89794 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008112 B = 0.003846 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3450.790166 B = 7279.082634 C = 9995.980013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.067 3.933 4 H 0.082 0.918 5 C -0.147 4.147 6 C -0.126 4.126 7 C 0.072 3.928 8 H 0.088 0.912 9 C 0.513 3.487 10 O -0.584 6.584 11 N -0.592 5.592 12 C 0.251 3.749 13 C -0.528 4.528 14 H 0.056 0.944 15 C 0.032 3.968 16 N -0.917 5.917 17 Si 0.944 3.056 18 H -0.270 1.270 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.130 3.870 22 C 0.059 3.941 23 N -0.536 5.536 24 C 0.015 3.985 25 C 0.069 3.931 26 O -0.403 6.403 27 C 0.066 3.934 28 C 0.016 3.984 29 O -0.372 6.372 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.030 0.970 40 H 0.024 0.976 41 H 0.267 0.733 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.017 0.983 46 H 0.028 0.972 47 H 0.085 0.915 48 H 0.067 0.933 49 H 0.115 0.885 50 H 0.066 0.934 51 H 0.120 0.880 52 H 0.097 0.903 53 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.892 -4.471 5.157 8.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C 0.010 3.990 4 H 0.100 0.900 5 C -0.185 4.185 6 C -0.164 4.164 7 C 0.011 3.989 8 H 0.105 0.895 9 C 0.301 3.699 10 O -0.465 6.465 11 N -0.324 5.324 12 C 0.131 3.869 13 C -0.567 4.567 14 H 0.074 0.926 15 C -0.169 4.169 16 N -0.557 5.557 17 Si 0.770 3.230 18 H -0.195 1.195 19 H -0.212 1.212 20 H -0.199 1.199 21 C 0.006 3.994 22 C -0.070 4.070 23 N -0.261 5.261 24 C -0.113 4.113 25 C -0.008 4.008 26 O -0.322 6.322 27 C -0.011 4.011 28 C -0.112 4.112 29 O -0.292 6.292 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.103 0.897 48 H 0.085 0.915 49 H 0.133 0.867 50 H 0.084 0.916 51 H 0.138 0.862 52 H 0.116 0.884 53 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.832 -4.641 5.796 8.859 hybrid contribution 0.285 0.038 -0.946 0.989 sum -4.547 -4.604 4.850 8.086 Atomic orbital electron populations 1.21716 0.94885 1.02247 1.01638 1.21574 0.97032 0.93155 1.03229 1.23513 0.94761 0.95289 0.85442 0.90009 1.23256 0.95679 0.96826 1.02711 1.22930 0.96766 0.97759 0.98945 1.22444 0.92190 0.91738 0.92563 0.89460 1.20776 0.78197 0.80214 0.90701 1.90573 1.57693 1.45469 1.52815 1.48129 1.46512 1.28469 1.09278 1.19210 0.94428 0.87731 0.85560 1.21472 1.07203 1.07570 1.20407 0.92630 1.25435 0.99961 0.94754 0.96768 1.69996 1.40729 1.15179 1.29747 0.85765 0.80286 0.77972 0.78997 1.19506 1.21248 1.19887 1.21204 0.98062 0.99460 0.80645 1.22251 0.95983 1.00104 0.88638 1.62177 1.54874 1.07767 1.01329 1.22868 1.00137 0.92026 0.96296 1.22741 0.95298 0.91935 0.90822 1.87941 1.71569 1.20830 1.51849 1.22796 1.02268 0.85884 0.90109 1.22892 0.95131 0.96276 0.96939 1.88911 1.56893 1.44887 1.38468 0.91210 0.94350 0.91772 0.88022 0.92457 0.87942 0.90967 0.89950 0.90180 0.95209 0.95763 0.92429 0.89712 0.91616 0.90404 0.96435 0.95383 0.89692 0.91457 0.86702 0.91581 0.86183 0.88448 0.94853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.86 71.98 0.71 -2.48 16 2 C -0.11 -2.63 5.69 30.59 0.17 -2.46 16 3 C 0.07 1.92 3.29 31.28 0.10 2.02 16 4 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 5 C -0.15 -4.29 6.59 31.90 0.21 -4.08 16 6 C -0.13 -4.64 4.49 31.59 0.14 -4.50 16 7 C 0.07 2.81 2.98 30.22 0.09 2.90 16 8 H 0.09 3.37 7.20 -2.38 -0.02 3.35 16 9 C 0.51 22.44 6.87 87.66 0.60 23.04 16 10 O -0.58 -28.42 16.11 15.68 0.25 -28.17 16 11 N -0.59 -24.84 2.46 -826.16 -2.03 -26.87 16 12 C 0.25 11.36 4.73 85.63 0.41 11.77 16 13 C -0.53 -25.26 6.48 25.60 0.17 -25.10 16 14 H 0.06 2.73 6.89 -2.91 -0.02 2.71 16 15 C 0.03 1.54 5.46 84.66 0.46 2.00 16 16 N -0.92 -47.52 13.29 21.45 0.28 -47.23 16 17 Si 0.94 39.40 29.54 68.60 2.03 41.42 16 18 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 19 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 C 0.13 4.88 5.34 86.38 0.46 5.34 16 22 C 0.06 1.99 5.28 86.30 0.46 2.45 16 23 N -0.54 -15.43 4.73 -895.23 -4.23 -19.67 16 24 C 0.01 0.41 5.44 86.32 0.47 0.88 16 25 C 0.07 1.54 7.01 72.02 0.50 2.04 16 26 O -0.40 -9.82 10.83 -148.98 -1.61 -11.44 16 27 C 0.07 1.35 7.01 72.02 0.50 1.85 16 28 C 0.02 0.37 5.64 86.31 0.49 0.86 16 29 O -0.37 -14.18 10.30 -130.26 -1.34 -15.52 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.04 1.00 8.06 -2.39 -0.02 0.98 16 32 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.07 2.11 8.06 -2.39 -0.02 2.09 16 37 H 0.08 3.16 7.97 -2.39 -0.02 3.14 16 38 H 0.08 3.32 5.18 -2.39 -0.01 3.31 16 39 H 0.03 1.40 6.19 -2.39 -0.01 1.39 16 40 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 41 H 0.27 13.23 8.31 -92.70 -0.77 12.46 16 42 H 0.08 3.22 8.07 -2.39 -0.02 3.20 16 43 H 0.07 2.54 5.80 -2.39 -0.01 2.53 16 44 H 0.08 2.60 8.04 -2.39 -0.02 2.58 16 45 H 0.02 0.65 8.12 -2.39 -0.02 0.63 16 46 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.08 2.40 6.38 -2.39 -0.02 2.38 16 48 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 50 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 52 H 0.10 2.11 8.09 -2.39 -0.02 2.09 16 53 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -60.85 408.85 0.17 -60.68 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 0.87 Total: 30.26 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 5.95 Total: 16.53 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -5.98 Total: -93.76 kcal Atomic # 8 Polarization: -52.43 SS G_CDS: -2.70 Total: -55.13 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.42 kcal Total: -60.85 0.17 -60.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362499807.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.800 kcal (2) G-P(sol) polarization free energy of solvation -60.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds