Wall clock time and date at job start Sat Apr 11 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47083 * 2 1 4 4 H 1.08997 * 109.51232 * 305.10391 * 3 2 1 5 5 C 1.53296 * 109.51169 * 184.99867 * 3 2 1 6 6 N 1.47155 * 108.38396 * 187.77499 * 5 3 2 7 7 C 1.34778 * 120.98112 * 230.51435 * 6 5 3 8 8 O 1.21352 * 119.99843 * 186.16058 * 7 6 5 9 9 C 1.49450 * 119.99877 * 6.15701 * 7 6 5 10 10 O 1.21347 * 120.00351 * 6.23874 * 9 7 6 11 11 N 1.34779 * 120.00028 * 186.23261 * 9 7 6 12 12 C 1.46491 * 120.00332 * 180.02562 * 11 9 7 13 13 C 1.52995 * 109.47499 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47159 * 59.99563 * 13 12 11 15 15 C 1.52998 * 109.47034 * 299.99557 * 13 12 11 16 16 C 1.50705 * 109.47552 * 179.97438 * 13 12 11 17 17 H 1.07997 * 119.99784 * 359.14941 * 16 13 12 18 18 C 1.37873 * 120.00356 * 179.14434 * 16 13 12 19 19 N 1.31507 * 120.00221 * 170.63339 * 18 16 13 20 20 Si 1.86802 * 119.99904 * 350.64495 * 18 16 13 21 21 H 1.48500 * 109.47054 * 264.57901 * 20 18 16 22 22 H 1.48498 * 109.47240 * 24.57638 * 20 18 16 23 23 H 1.48502 * 109.47427 * 144.57852 * 20 18 16 24 24 C 1.47153 * 118.03703 * 50.78769 * 6 5 3 25 25 C 1.53717 * 108.16096 * 309.15777 * 24 6 5 26 26 H 1.09001 * 109.48557 * 172.39856 * 25 24 6 27 27 C 1.52996 * 109.65448 * 292.57280 * 25 24 6 28 28 C 1.53004 * 109.46637 * 184.74172 * 27 25 24 29 29 O 1.42964 * 109.14705 * 52.53600 * 25 24 6 30 30 H 1.09009 * 109.47122 * 299.99769 * 1 2 3 31 31 H 1.08995 * 109.47204 * 59.99357 * 1 2 3 32 32 H 1.08996 * 109.47523 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46925 * 240.00120 * 2 1 3 34 34 H 1.08998 * 109.47081 * 119.99886 * 2 1 3 35 35 H 1.09002 * 109.68050 * 68.05414 * 5 3 2 36 36 H 1.08996 * 109.71220 * 307.51303 * 5 3 2 37 37 H 0.97000 * 119.99696 * 359.97438 * 11 9 7 38 38 H 1.08997 * 109.47470 * 59.99690 * 12 11 9 39 39 H 1.09001 * 109.47052 * 299.99988 * 12 11 9 40 40 H 1.09008 * 109.47438 * 169.55779 * 14 13 12 41 41 H 1.09002 * 109.47530 * 289.56056 * 14 13 12 42 42 H 1.09005 * 109.47250 * 49.56364 * 14 13 12 43 43 H 1.08998 * 109.47178 * 300.00363 * 15 13 12 44 44 H 1.09008 * 109.47097 * 60.00166 * 15 13 12 45 45 H 1.09002 * 109.47423 * 179.97438 * 15 13 12 46 46 H 0.97005 * 120.00324 * 180.02562 * 19 18 16 47 47 H 1.09003 * 109.68052 * 68.93855 * 24 6 5 48 48 H 1.09000 * 109.68248 * 189.49237 * 24 6 5 49 49 H 1.08996 * 109.47606 * 304.74004 * 27 25 24 50 50 H 1.09003 * 109.47317 * 64.74704 * 27 25 24 51 51 H 1.09002 * 109.47113 * 179.97438 * 28 27 25 52 52 H 1.09002 * 109.47433 * 299.99669 * 28 27 25 53 53 H 1.08997 * 109.47495 * 60.00383 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6043 1.9827 -0.8405 5 6 3.5678 1.4454 -0.1259 6 7 4.0465 2.8238 0.0644 7 6 4.8919 3.3927 -0.8177 8 8 5.3633 4.4869 -0.5873 9 6 5.2488 2.6758 -2.0796 10 8 4.6928 1.6356 -2.3646 11 7 6.1883 3.1848 -2.9011 12 6 6.5378 2.4825 -4.1383 13 6 7.6222 3.2659 -4.8806 14 6 8.8631 3.3847 -3.9936 15 6 7.1006 4.6641 -5.2180 16 6 7.9822 2.5430 -6.1531 17 1 7.4969 1.6104 -6.4001 18 6 8.9310 3.0724 -7.0019 19 7 9.3795 2.3605 -8.0125 20 14 9.5796 4.8007 -6.7162 21 1 8.8187 5.7601 -7.5563 22 1 9.4174 5.1599 -5.2844 23 1 11.0181 4.8562 -7.0806 24 6 3.5798 3.5607 1.2496 25 6 2.0472 3.4566 1.3057 26 1 1.6882 3.8781 2.2446 27 6 1.4359 4.2261 0.1332 28 6 -0.0890 4.2196 0.2585 29 8 1.6673 2.0807 1.2238 30 1 -0.3634 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8552 1.0904 -1.1156 36 1 4.0007 0.7979 0.6365 37 1 6.6324 4.0166 -2.6736 38 1 5.6536 2.3974 -4.7700 39 1 6.9097 1.4865 -3.8980 40 1 9.6939 3.7752 -4.5815 41 1 8.6542 4.0618 -3.1653 42 1 9.1254 2.4018 -3.6022 43 1 6.2165 4.5794 -5.8499 44 1 6.8405 5.1868 -4.2975 45 1 7.8733 5.2224 -5.7465 46 1 10.0474 2.7328 -8.6096 47 1 4.0135 3.1226 2.1486 48 1 3.8752 4.6070 1.1713 49 1 1.7970 5.2545 0.1457 50 1 1.7254 3.7507 -0.8040 51 1 -0.5246 4.7682 -0.5766 52 1 -0.4502 3.1912 0.2460 53 1 -0.3787 4.6950 1.1956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422492005.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:05 Heat of formation + Delta-G solvation = -109.406758 kcal Electronic energy + Delta-G solvation = -31800.033242 eV Core-core repulsion = 27672.326750 eV Total energy + Delta-G solvation = -4127.706492 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -42.26772 -40.72767 -39.50254 -38.57735 -36.18205 -35.67451 -34.94502 -33.46310 -33.46143 -30.71622 -29.31470 -28.11255 -27.99086 -27.05806 -25.64542 -25.11207 -23.76721 -22.80137 -21.43631 -21.01711 -20.45430 -18.99230 -18.36381 -18.06453 -17.69668 -17.35965 -17.21715 -16.75838 -16.34427 -16.10134 -15.96847 -15.79999 -15.21691 -15.03649 -14.89598 -14.76926 -14.56239 -14.46006 -14.21930 -14.09720 -13.99324 -13.78960 -13.52058 -13.46279 -13.00968 -12.93773 -12.70262 -12.40544 -12.35876 -12.18183 -12.07389 -12.02404 -11.96680 -11.96011 -11.79428 -11.77828 -11.55490 -11.05442 -10.99942 -10.68616 -10.35424 -10.28450 -10.15787 -9.67389 -8.29682 -6.33189 0.23480 1.17320 1.36008 1.39429 1.48552 2.02936 2.33578 2.34513 2.72306 3.07369 3.20346 3.58870 3.65688 3.93376 3.96923 4.00620 4.03770 4.18034 4.28823 4.30061 4.36376 4.39376 4.40575 4.55675 4.62694 4.65517 4.68601 4.71031 4.72807 4.80094 4.83914 4.88083 4.90224 4.94555 5.04278 5.06809 5.09164 5.12900 5.17255 5.21250 5.26026 5.34885 5.39628 5.46832 5.48038 5.68506 5.73516 5.85231 6.14199 6.19903 6.29137 6.60745 6.72418 6.88498 7.33093 8.86948 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019501 B = 0.002641 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.475615 B =10597.572881 C =11172.752330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.083 3.917 4 H 0.057 0.943 5 C 0.020 3.980 6 N -0.577 5.577 7 C 0.512 3.488 8 O -0.539 6.539 9 C 0.503 3.497 10 O -0.530 6.530 11 N -0.678 5.678 12 C 0.152 3.848 13 C 0.026 3.974 14 C -0.146 4.146 15 C -0.150 4.150 16 C -0.511 4.511 17 H 0.037 0.963 18 C 0.019 3.981 19 N -0.947 5.947 20 Si 0.929 3.071 21 H -0.287 1.287 22 H -0.195 1.195 23 H -0.312 1.312 24 C 0.075 3.925 25 C 0.083 3.917 26 H 0.140 0.860 27 C -0.155 4.155 28 C -0.142 4.142 29 O -0.371 6.371 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.152 0.848 36 H 0.081 0.919 37 H 0.416 0.584 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.264 0.736 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.075 0.925 50 H 0.047 0.953 51 H 0.053 0.947 52 H 0.054 0.946 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.309 2.579 22.589 28.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C 0.025 3.975 4 H 0.075 0.925 5 C -0.101 4.101 6 N -0.310 5.310 7 C 0.294 3.706 8 O -0.416 6.416 9 C 0.284 3.716 10 O -0.410 6.410 11 N -0.329 5.329 12 C 0.029 3.971 13 C 0.025 3.975 14 C -0.203 4.203 15 C -0.206 4.206 16 C -0.549 4.549 17 H 0.055 0.945 18 C -0.178 4.178 19 N -0.587 5.587 20 Si 0.758 3.242 21 H -0.215 1.215 22 H -0.118 1.118 23 H -0.241 1.241 24 C -0.046 4.046 25 C 0.025 3.975 26 H 0.157 0.843 27 C -0.193 4.193 28 C -0.199 4.199 29 O -0.290 6.290 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.168 0.832 36 H 0.099 0.901 37 H 0.254 0.746 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.056 0.944 46 H 0.073 0.927 47 H 0.112 0.888 48 H 0.119 0.881 49 H 0.094 0.906 50 H 0.066 0.934 51 H 0.072 0.928 52 H 0.073 0.927 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.429 2.324 22.513 28.566 hybrid contribution 1.034 0.891 -0.958 1.668 sum -16.395 3.215 21.555 27.272 Atomic orbital electron populations 1.21664 0.94476 1.02178 1.01826 1.21501 0.97280 0.92746 1.03513 1.22470 0.92216 0.95332 0.87514 0.92470 1.23987 0.95824 0.81113 1.09161 1.47996 1.44038 1.15843 1.23149 1.19972 0.80322 0.85771 0.84504 1.90737 1.52879 1.21187 1.76840 1.20284 0.80850 0.85233 0.85230 1.90302 1.52517 1.23951 1.74215 1.46023 1.37769 1.27289 1.21833 1.21353 0.97873 0.95209 0.82640 1.18677 0.92277 0.93090 0.93445 1.22309 0.98498 1.00799 0.98682 1.22341 1.00401 0.97101 1.00805 1.20994 1.21794 1.07529 1.04574 0.94505 1.25785 0.95941 1.01478 0.94644 1.70069 1.31156 1.38844 1.18600 0.86638 0.75377 0.80432 0.81777 1.21482 1.11829 1.24106 1.22762 0.95739 0.98989 0.87158 1.22824 0.91404 0.82491 1.00819 0.84307 1.22108 0.97775 1.00968 0.98451 1.21647 0.93873 1.02072 1.02302 1.87991 1.79950 1.23322 1.37737 0.92382 0.93211 0.91625 0.89853 0.90487 0.83159 0.90095 0.74610 0.92096 0.92034 0.93502 0.92264 0.93335 0.93045 0.91684 0.94405 0.92703 0.88829 0.88128 0.90599 0.93444 0.92761 0.92708 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.81 71.98 0.71 -1.31 16 2 C -0.11 -1.74 5.64 30.59 0.17 -1.57 16 3 C 0.08 1.53 2.39 30.69 0.07 1.60 16 4 H 0.06 1.19 6.15 -2.39 -0.01 1.18 16 5 C 0.02 0.42 5.79 86.35 0.50 0.92 16 6 N -0.58 -12.96 2.61 -818.09 -2.14 -15.10 16 7 C 0.51 14.02 7.76 87.27 0.68 14.70 16 8 O -0.54 -16.24 15.99 -3.25 -0.05 -16.29 16 9 C 0.50 15.21 7.79 87.27 0.68 15.89 16 10 O -0.53 -17.25 13.11 -3.24 -0.04 -17.29 16 11 N -0.68 -21.04 5.00 -464.44 -2.32 -23.36 16 12 C 0.15 5.62 4.48 86.38 0.39 6.01 16 13 C 0.03 1.08 0.50 -52.93 -0.03 1.05 16 14 C -0.15 -5.48 7.38 71.98 0.53 -4.94 16 15 C -0.15 -5.60 7.55 71.98 0.54 -5.06 16 16 C -0.51 -27.17 8.62 25.60 0.22 -26.95 16 17 H 0.04 2.20 7.99 -2.91 -0.02 2.18 16 18 C 0.02 1.05 5.38 84.65 0.46 1.51 16 19 N -0.95 -57.91 13.96 21.44 0.30 -57.61 16 20 Si 0.93 42.01 22.83 68.60 1.57 43.58 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.19 -7.49 4.28 99.48 0.43 -7.06 16 23 H -0.31 -14.58 7.11 99.48 0.71 -13.88 16 24 C 0.08 1.30 6.03 86.50 0.52 1.82 16 25 C 0.08 1.22 3.31 30.83 0.10 1.32 16 26 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 27 C -0.16 -2.50 5.00 30.59 0.15 -2.35 16 28 C -0.14 -1.93 9.81 71.98 0.71 -1.23 16 29 O -0.37 -6.49 9.31 -148.98 -1.39 -7.87 16 30 H 0.06 0.85 7.83 -2.38 -0.02 0.83 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.15 3.81 3.82 -75.94 -0.29 3.52 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.42 12.00 5.76 -92.71 -0.53 11.46 16 38 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 40 H 0.05 1.86 4.00 -2.38 -0.01 1.85 16 41 H 0.06 1.83 7.15 -2.39 -0.02 1.81 16 42 H 0.05 1.80 8.11 -2.38 -0.02 1.78 16 43 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.06 2.00 6.86 -2.38 -0.02 1.98 16 45 H 0.04 1.48 2.50 -2.39 -0.01 1.47 16 46 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 47 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.10 1.81 7.13 -2.39 -0.02 1.79 16 49 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.05 0.98 5.97 -2.39 -0.01 0.96 16 51 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 52 H 0.05 0.82 7.82 -2.39 -0.02 0.80 16 53 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -64.43 393.80 2.15 -62.28 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: -0.18 Total: 30.25 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 6.40 Total: 1.43 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -4.16 Total: -96.07 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.48 Total: -41.46 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.57 Total: 43.58 kcal Total: -64.43 2.15 -62.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422492005.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.124 kcal (2) G-P(sol) polarization free energy of solvation -64.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds