Wall clock time and date at job start Sat Apr 11 2020 06:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52991 * 109.47196 * 2 1 4 4 C 1.52995 * 109.46947 * 239.99514 * 2 1 3 5 5 O 1.45201 * 109.46808 * 119.99897 * 2 1 3 6 6 C 1.34225 * 117.00290 * 59.99937 * 5 2 1 7 7 O 1.20824 * 119.99912 * 359.97438 * 6 5 2 8 8 C 1.50710 * 120.00054 * 179.97438 * 6 5 2 9 9 C 1.53000 * 109.46835 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.46949 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99966 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00266 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00231 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46914 * 179.97438 * 13 12 10 15 15 C 1.53350 * 109.41773 * 295.12314 * 14 13 12 16 16 C 1.53198 * 109.14641 * 178.67869 * 15 14 13 17 17 N 1.46925 * 108.89335 * 54.57862 * 16 15 14 18 18 C 1.36931 * 120.63201 * 126.29969 * 17 16 15 19 19 H 1.08005 * 119.99889 * 331.83485 * 18 17 16 20 20 C 1.38813 * 120.00220 * 151.82683 * 18 17 16 21 21 N 1.31618 * 120.00004 * 343.08678 * 20 18 17 22 22 Si 1.86806 * 119.99953 * 163.08567 * 20 18 17 23 23 H 1.48496 * 109.47191 * 90.00149 * 22 20 18 24 24 H 1.48501 * 109.46981 * 210.00196 * 22 20 18 25 25 H 1.48500 * 109.46794 * 329.99854 * 22 20 18 26 26 C 1.46925 * 118.73856 * 306.31536 * 17 16 15 27 27 C 1.53044 * 109.45578 * 174.99670 * 14 13 12 28 28 H 1.08999 * 109.46906 * 300.00128 * 1 2 3 29 29 H 1.08994 * 109.46993 * 59.99846 * 1 2 3 30 30 H 1.08999 * 109.47172 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47334 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47532 * 300.00024 * 3 2 1 33 33 H 1.08999 * 109.47716 * 59.99774 * 3 2 1 34 34 H 1.08999 * 109.47312 * 300.00071 * 4 2 1 35 35 H 1.08999 * 109.47181 * 60.00293 * 4 2 1 36 36 H 1.09003 * 109.47013 * 179.97438 * 4 2 1 37 37 H 1.09000 * 109.46839 * 60.00057 * 8 6 5 38 38 H 1.08998 * 109.47010 * 300.00061 * 8 6 5 39 39 H 1.09000 * 109.47014 * 59.99985 * 9 8 6 40 40 H 1.08998 * 109.47314 * 299.99805 * 9 8 6 41 41 H 0.97000 * 119.99583 * 359.97438 * 12 10 9 42 42 H 1.09000 * 109.47093 * 59.99701 * 13 12 10 43 43 H 1.08998 * 109.46676 * 299.99753 * 13 12 10 44 44 H 1.08997 * 109.45943 * 55.02788 * 14 13 12 45 45 H 1.08996 * 109.68537 * 58.71633 * 15 14 13 46 46 H 1.09000 * 109.47180 * 298.51549 * 15 14 13 47 47 H 1.08997 * 109.58387 * 294.71773 * 16 15 14 48 48 H 1.08993 * 109.58533 * 174.43928 * 16 15 14 49 49 H 0.96996 * 119.99787 * 179.97438 * 21 20 18 50 50 H 1.08998 * 109.58495 * 173.39541 * 26 17 16 51 51 H 1.09000 * 109.58924 * 293.68296 * 26 17 16 52 52 H 1.08996 * 109.49900 * 61.43384 * 27 14 13 53 53 H 1.08999 * 109.52516 * 301.35224 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6533 -1.9684 1.3380 7 8 0.9559 -2.5025 0.5084 8 6 2.1182 -2.7437 2.5438 9 6 1.5716 -4.1710 2.4742 10 6 2.0369 -4.9464 3.6796 11 8 2.7366 -4.4102 4.5126 12 7 1.6749 -6.2356 3.8326 13 6 2.1269 -6.9893 5.0047 14 6 1.5792 -8.4163 4.9357 15 6 0.0495 -8.3808 5.0372 16 6 -0.4942 -9.8093 4.9343 17 7 0.1606 -10.6421 5.9524 18 6 -0.5833 -11.3729 6.8398 19 1 -1.5702 -11.0372 7.1223 20 6 -0.0690 -12.5453 7.3764 21 7 0.9616 -13.1332 6.8066 22 14 -0.8395 -13.2887 8.9072 23 1 -1.9139 -14.2342 8.5113 24 1 0.1989 -14.0152 9.6811 25 1 -1.4160 -12.2074 9.7460 26 6 1.6286 -10.6755 6.0003 27 6 2.1518 -9.2386 6.0926 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2076 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 1.7548 -2.2587 3.4498 38 1 3.2077 -2.7726 2.5592 39 1 1.9354 -4.6556 1.5682 40 1 0.4821 -4.1424 2.4586 41 1 1.1144 -6.6642 3.1669 42 1 1.7634 -6.5045 5.9108 43 1 3.2163 -7.0182 5.0201 44 1 1.8692 -8.8711 3.9886 45 1 -0.3583 -7.7770 4.2265 46 1 -0.2412 -7.9490 5.9949 47 1 -0.2828 -10.2102 3.9430 48 1 -1.5708 -9.8036 5.1040 49 1 1.3212 -13.9522 7.1818 50 1 1.9529 -11.2392 6.8751 51 1 2.0131 -11.1493 5.0971 52 1 1.8414 -8.7985 7.0402 53 1 3.2401 -9.2431 6.0327 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433981628.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:31 Heat of formation + Delta-G solvation = -145.673464 kcal Electronic energy + Delta-G solvation = -29557.564971 eV Core-core repulsion = 25428.285837 eV Total energy + Delta-G solvation = -4129.279134 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.91089 -40.81890 -39.34132 -38.14838 -36.40738 -35.12616 -34.48103 -33.84949 -32.47830 -31.39135 -28.82545 -28.36342 -28.29044 -27.05616 -25.44535 -23.83446 -22.99638 -22.39057 -21.29265 -20.60852 -20.57370 -18.82588 -18.53862 -17.59536 -17.51969 -17.18138 -16.93928 -16.70441 -16.51705 -15.75269 -15.49771 -15.29764 -15.19332 -15.04515 -14.80655 -14.70895 -14.37803 -14.21489 -13.98541 -13.78435 -13.37333 -13.35923 -13.09518 -13.07989 -12.98240 -12.91420 -12.85978 -12.79462 -12.54987 -12.48374 -12.26010 -12.17414 -12.12835 -12.01259 -11.83421 -11.60571 -11.37989 -11.26494 -11.08968 -10.98455 -10.87674 -10.52273 -10.04242 -8.65558 -7.86846 -5.31518 1.19817 1.45923 1.47911 1.57248 1.59456 1.64872 2.34228 2.51756 3.27905 3.49150 3.72659 3.74085 3.80135 3.84702 3.86955 3.94868 3.97279 4.04048 4.06767 4.12939 4.53650 4.55723 4.56584 4.60854 4.61612 4.71041 4.75028 4.77350 4.79904 4.82782 4.85069 4.88510 4.91802 4.93137 4.95459 5.03562 5.13769 5.16064 5.27027 5.30196 5.30241 5.32132 5.40625 5.48885 5.56498 5.57307 5.66898 5.80532 6.40730 6.57249 6.80377 7.16744 7.25669 7.89334 8.39783 9.19252 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.034083 B = 0.001564 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.322280 B =17900.784177 C =18164.965369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.359 6.359 6 C 0.469 3.531 7 O -0.521 6.521 8 C -0.097 4.097 9 C -0.120 4.120 10 C 0.514 3.486 11 O -0.584 6.584 12 N -0.716 5.716 13 C 0.136 3.864 14 C -0.079 4.079 15 C -0.114 4.114 16 C 0.138 3.862 17 N -0.612 5.612 18 C -0.263 4.263 19 H 0.064 0.936 20 C -0.050 4.050 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.284 1.284 24 H -0.293 1.293 25 H -0.272 1.272 26 C 0.177 3.823 27 C -0.122 4.122 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.415 0.585 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.050 0.950 47 H 0.018 0.982 48 H 0.050 0.950 49 H 0.249 0.751 50 H 0.050 0.950 51 H -0.002 1.002 52 H 0.049 0.951 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.284 28.291 -15.899 32.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.069 3.931 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.276 6.276 6 C 0.313 3.687 7 O -0.411 6.411 8 C -0.135 4.135 9 C -0.159 4.159 10 C 0.302 3.698 11 O -0.464 6.464 12 N -0.368 5.368 13 C 0.012 3.988 14 C -0.098 4.098 15 C -0.153 4.153 16 C 0.013 3.987 17 N -0.336 5.336 18 C -0.393 4.393 19 H 0.082 0.918 20 C -0.246 4.246 21 N -0.580 5.580 22 Si 0.792 3.208 23 H -0.211 1.211 24 H -0.219 1.219 25 H -0.197 1.197 26 C 0.051 3.949 27 C -0.162 4.162 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.252 0.748 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.104 0.896 46 H 0.068 0.932 47 H 0.036 0.964 48 H 0.069 0.931 49 H 0.058 0.942 50 H 0.068 0.932 51 H 0.016 0.984 52 H 0.068 0.932 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.622 28.395 -15.537 32.474 hybrid contribution -0.556 -1.311 0.578 1.537 sum 2.066 27.084 -14.960 31.009 Atomic orbital electron populations 1.22465 0.93838 1.03758 1.03697 1.22493 0.94711 0.93331 0.82541 1.21881 1.02366 0.91198 1.04096 1.22462 1.01771 1.02205 0.97297 1.86558 1.69814 1.25291 1.45966 1.23748 0.76830 0.80764 0.87352 1.90589 1.36114 1.70275 1.44077 1.21070 1.04403 0.93406 0.94585 1.21380 1.04310 0.93543 0.96699 1.20918 0.79353 0.82016 0.87559 1.90709 1.39783 1.69941 1.46000 1.45975 1.53310 1.11690 1.25793 1.21258 0.98837 0.90618 0.88078 1.21205 0.95786 0.93467 0.99306 1.21985 0.94724 0.96895 1.01695 1.21081 0.95991 0.90775 0.90837 1.44319 1.01837 1.52054 1.35349 1.19499 1.00557 1.01303 1.17984 0.91829 1.25765 0.99675 0.96473 1.02666 1.70175 1.28288 1.19012 1.40575 0.85331 0.77352 0.78131 0.79965 1.21104 1.21892 1.19707 1.20571 0.82959 0.92822 0.98539 1.21973 0.99601 0.96720 0.97881 0.91873 0.89342 0.91673 0.91326 0.88432 0.91352 0.91671 0.89350 0.91831 0.86768 0.86698 0.86528 0.86577 0.74821 0.92544 0.91901 0.90506 0.89550 0.93166 0.96445 0.93146 0.94161 0.93157 0.98364 0.93175 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 8.37 71.98 0.60 -1.71 16 2 C 0.10 1.38 1.13 -10.80 -0.01 1.37 16 3 C -0.14 -1.17 8.85 71.98 0.64 -0.53 16 4 C -0.18 -2.29 8.37 71.98 0.60 -1.69 16 5 O -0.36 -6.04 9.89 -51.37 -0.51 -6.55 16 6 C 0.47 8.01 7.27 71.24 0.52 8.53 16 7 O -0.52 -10.44 11.48 21.97 0.25 -10.18 16 8 C -0.10 -1.45 5.10 29.85 0.15 -1.29 16 9 C -0.12 -1.71 4.99 29.85 0.15 -1.56 16 10 C 0.51 10.74 7.83 87.66 0.69 11.43 16 11 O -0.58 -16.83 15.98 -3.04 -0.05 -16.88 16 12 N -0.72 -14.10 5.27 -463.06 -2.44 -16.54 16 13 C 0.14 3.39 5.07 86.38 0.44 3.82 16 14 C -0.08 -2.25 2.19 -10.66 -0.02 -2.27 16 15 C -0.11 -3.39 5.27 30.78 0.16 -3.23 16 16 C 0.14 5.44 6.50 86.36 0.56 6.00 16 17 N -0.61 -30.30 2.99 -699.09 -2.09 -32.39 16 18 C -0.26 -14.50 9.58 84.03 0.81 -13.69 16 19 H 0.06 3.43 7.89 -2.91 -0.02 3.40 16 20 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 21 N -0.93 -55.34 11.20 21.65 0.24 -55.10 16 22 Si 0.96 45.03 29.59 68.60 2.03 47.06 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 C 0.18 8.38 5.30 86.36 0.46 8.84 16 27 C -0.12 -4.37 5.36 30.68 0.16 -4.21 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 1.11 5.89 -2.39 -0.01 1.10 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 1.10 5.89 -2.39 -0.01 1.09 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.11 1.70 8.10 -2.39 -0.02 1.68 16 38 H 0.11 1.69 8.10 -2.39 -0.02 1.67 16 39 H 0.12 1.40 8.10 -2.39 -0.02 1.38 16 40 H 0.12 1.42 8.10 -2.39 -0.02 1.40 16 41 H 0.41 6.16 7.65 -92.71 -0.71 5.45 16 42 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.09 1.93 7.16 -2.39 -0.02 1.91 16 46 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.05 1.97 7.93 -2.39 -0.02 1.95 16 49 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 50 H 0.05 2.74 6.06 -2.39 -0.01 2.73 16 51 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 52 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 53 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -70.61 415.13 3.92 -66.69 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.17 Total: 16.50 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 6.32 Total: 7.39 kcal Atomic # 7 Polarization: -99.74 SS G_CDS: -4.29 Total: -104.03 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.30 Total: -33.61 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -70.61 3.92 -66.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433981628.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.984 kcal (2) G-P(sol) polarization free energy of solvation -70.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds