Wall clock time and date at job start Sat Apr 11 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46824 * 2 1 4 4 C 1.52997 * 109.47520 * 239.99677 * 2 1 3 5 5 O 1.45197 * 109.46927 * 119.99571 * 2 1 3 6 6 C 1.34638 * 117.00123 * 60.00328 * 5 2 1 7 7 O 1.21511 * 120.00059 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00041 * 179.97438 * 6 5 2 9 9 C 1.46498 * 120.00113 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.47271 * 34.99705 * 9 8 6 11 11 C 1.53001 * 109.46965 * 274.99924 * 9 8 6 12 12 C 1.52998 * 109.47149 * 299.99731 * 11 9 8 13 13 C 1.53006 * 109.46924 * 300.00180 * 12 11 9 14 14 C 1.52998 * 109.47002 * 59.99949 * 13 12 11 15 15 H 1.09006 * 109.47195 * 60.00188 * 14 13 12 16 16 C 1.50706 * 109.46708 * 179.97438 * 14 13 12 17 17 O 1.21283 * 119.99503 * 119.99964 * 16 14 13 18 18 N 1.34777 * 120.00110 * 300.00180 * 16 14 13 19 19 C 1.46496 * 119.99610 * 180.02562 * 18 16 14 20 20 C 1.52998 * 109.46847 * 179.97438 * 19 18 16 21 21 C 1.50706 * 109.47348 * 179.97438 * 20 19 18 22 22 H 1.08005 * 119.99758 * 359.97438 * 21 20 19 23 23 C 1.37871 * 120.00102 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00217 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99766 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47057 * 179.97438 * 25 23 21 27 27 H 1.48500 * 109.47389 * 300.00068 * 25 23 21 28 28 H 1.48504 * 109.47102 * 60.00417 * 25 23 21 29 29 C 1.52996 * 109.47372 * 154.99589 * 9 8 6 30 30 H 1.08996 * 109.47176 * 299.99959 * 1 2 3 31 31 H 1.08999 * 109.46770 * 60.00629 * 1 2 3 32 32 H 1.09002 * 109.46773 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47066 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47236 * 299.99892 * 3 2 1 35 35 H 1.08993 * 109.47831 * 59.99650 * 3 2 1 36 36 H 1.09004 * 109.46741 * 300.00129 * 4 2 1 37 37 H 1.09002 * 109.46622 * 59.99495 * 4 2 1 38 38 H 1.08991 * 109.47551 * 179.97438 * 4 2 1 39 39 H 0.96999 * 120.00087 * 359.97438 * 8 6 5 40 40 H 1.09002 * 109.47360 * 179.97438 * 11 9 8 41 41 H 1.09002 * 109.47144 * 59.99863 * 11 9 8 42 42 H 1.08996 * 109.47228 * 180.02562 * 12 11 9 43 43 H 1.09002 * 109.46857 * 59.99854 * 12 11 9 44 44 H 1.09002 * 109.47088 * 299.99533 * 13 12 11 45 45 H 1.09005 * 109.46823 * 179.97438 * 13 12 11 46 46 H 0.96996 * 119.99887 * 359.97438 * 18 16 14 47 47 H 1.09000 * 109.47627 * 59.99917 * 19 18 16 48 48 H 1.09002 * 109.46983 * 299.99313 * 19 18 16 49 49 H 1.09001 * 109.47671 * 59.99931 * 20 19 18 50 50 H 1.09006 * 109.47297 * 299.99651 * 20 19 18 51 51 H 0.97001 * 119.99646 * 359.97438 * 24 23 21 52 52 H 1.09000 * 109.47441 * 300.00244 * 29 9 8 53 53 H 1.09002 * 109.47087 * 179.97438 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9510 -2.5094 0.5042 8 7 2.0681 -2.6655 2.4168 9 6 1.6749 -4.0670 2.5829 10 1 1.6284 -4.5495 1.6065 11 6 0.3005 -4.1353 3.2515 12 6 0.3658 -3.4582 4.6220 13 6 1.3950 -4.1764 5.4971 14 6 2.7694 -4.1080 4.8284 15 1 3.0620 -3.0653 4.7049 16 6 3.7833 -4.8149 5.6908 17 8 4.3936 -5.7670 5.2525 18 7 4.0117 -4.3892 6.9489 19 6 4.9977 -5.0760 7.7869 20 6 5.0632 -4.3981 9.1570 21 6 6.0770 -5.1050 10.0193 22 1 6.6200 -5.9533 9.6293 23 6 6.3114 -4.6689 11.3061 24 7 5.6499 -3.6363 11.7812 25 14 7.5675 -5.5457 12.3751 26 1 7.6321 -4.8868 13.7044 27 1 7.1680 -6.9658 12.5449 28 1 8.9015 -5.4808 11.7258 29 6 2.7041 -4.7852 3.4580 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6768 -1.7490 -1.2491 37 1 1.6767 -0.2075 -2.1391 38 1 3.1300 -0.7209 -1.2494 39 1 2.6282 -2.2368 3.0827 40 1 0.0077 -5.1780 3.3747 41 1 -0.4327 -3.6237 2.6280 42 1 -0.6132 -3.5072 5.0985 43 1 0.6584 -2.4155 4.4984 44 1 1.1025 -5.2191 5.6207 45 1 1.4419 -3.6937 6.4733 46 1 3.5239 -3.6275 7.2993 47 1 5.9768 -5.0270 7.3105 48 1 4.7057 -6.1189 7.9108 49 1 4.0842 -4.4468 9.6337 50 1 5.3554 -3.3553 9.0328 51 1 4.9974 -3.1812 11.2261 52 1 3.6833 -4.7365 2.9816 53 1 2.4114 -5.8278 3.5819 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495138352.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:00 Heat of formation + Delta-G solvation = -179.623253 kcal Electronic energy + Delta-G solvation = -30438.784596 eV Core-core repulsion = 26308.033288 eV Total energy + Delta-G solvation = -4130.751307 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -42.02161 -41.22051 -39.52979 -37.72487 -36.81839 -35.38067 -35.05900 -34.41151 -32.33249 -31.28328 -30.48260 -28.34076 -28.27993 -26.58360 -24.78602 -24.23180 -23.26700 -23.09568 -21.48370 -21.19012 -20.19533 -19.42991 -18.91695 -17.95515 -17.57925 -17.25332 -17.03899 -16.67116 -16.18270 -16.07249 -15.69836 -15.62512 -15.49098 -15.24087 -15.08715 -14.68318 -14.47478 -14.23004 -13.75625 -13.71598 -13.54800 -13.38955 -13.21230 -13.14591 -13.09218 -12.87152 -12.85789 -12.84301 -12.54948 -12.37066 -12.28370 -12.27814 -12.10211 -11.87934 -11.81951 -11.51274 -11.38892 -11.28886 -11.07710 -11.00698 -10.61329 -10.58343 -10.16246 -10.09212 -8.72070 -6.43266 1.19301 1.54163 1.59988 1.61361 1.79194 1.81236 2.20370 2.56976 3.12901 3.16006 3.45610 3.62646 3.71103 3.77088 3.82259 3.95928 3.97100 4.11050 4.15625 4.26768 4.33280 4.34622 4.39646 4.53222 4.57456 4.62399 4.63504 4.67319 4.72975 4.78656 4.82678 4.88028 4.89581 4.99720 5.04710 5.10326 5.10645 5.11984 5.22087 5.25485 5.29688 5.30116 5.33015 5.36363 5.41363 5.46061 5.61535 5.93510 6.13508 6.40661 6.49194 6.60732 7.22561 7.36296 7.36424 8.70217 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018564 B = 0.001920 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.932311 B =14583.380889 C =15144.755112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.125 3.875 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.372 6.372 6 C 0.647 3.353 7 O -0.590 6.590 8 N -0.696 5.696 9 C 0.173 3.827 10 H 0.087 0.913 11 C -0.129 4.129 12 C -0.108 4.108 13 C -0.109 4.109 14 C -0.096 4.096 15 H 0.114 0.886 16 C 0.510 3.490 17 O -0.588 6.588 18 N -0.717 5.717 19 C 0.147 3.853 20 C 0.007 3.993 21 C -0.624 4.624 22 H 0.049 0.951 23 C -0.032 4.032 24 N -0.932 5.932 25 Si 1.116 2.884 26 H -0.281 1.281 27 H -0.271 1.271 28 H -0.271 1.271 29 C -0.099 4.099 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.411 0.589 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.410 0.590 47 H 0.044 0.956 48 H 0.044 0.956 49 H 0.007 0.993 50 H 0.006 0.994 51 H 0.259 0.741 52 H 0.068 0.932 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.634 9.083 -24.412 29.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.089 3.911 3 C -0.194 4.194 4 C -0.237 4.237 5 O -0.287 6.287 6 C 0.401 3.599 7 O -0.481 6.481 8 N -0.357 5.357 9 C 0.070 3.930 10 H 0.105 0.895 11 C -0.168 4.168 12 C -0.145 4.145 13 C -0.147 4.147 14 C -0.117 4.117 15 H 0.132 0.868 16 C 0.297 3.703 17 O -0.468 6.468 18 N -0.368 5.368 19 C 0.023 3.977 20 C -0.030 4.030 21 C -0.662 4.662 22 H 0.067 0.933 23 C -0.231 4.231 24 N -0.569 5.569 25 Si 0.937 3.063 26 H -0.207 1.207 27 H -0.196 1.196 28 H -0.196 1.196 29 C -0.137 4.137 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.248 0.752 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.246 0.754 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.025 0.975 50 H 0.024 0.976 51 H 0.069 0.931 52 H 0.087 0.913 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.847 8.222 -23.686 28.173 hybrid contribution -0.543 0.377 -0.957 1.163 sum -13.390 8.598 -24.643 29.335 Atomic orbital electron populations 1.22455 0.93774 1.03773 1.03497 1.22382 0.94695 0.92549 0.81499 1.21890 1.02312 0.90957 1.04281 1.22471 1.01471 1.02316 0.97417 1.86323 1.71666 1.23339 1.47360 1.18255 0.78671 0.80749 0.82234 1.90885 1.42158 1.70832 1.44242 1.44922 1.54996 1.12560 1.23183 1.20918 0.94187 0.78465 0.99455 0.89457 1.21949 0.95787 1.02463 0.96553 1.21440 0.99226 0.99479 0.94368 1.21577 0.91784 1.02184 0.99165 1.21336 0.94603 1.01094 0.94643 0.86794 1.21307 0.83263 0.83757 0.81934 1.90669 1.52186 1.30236 1.73730 1.46158 1.42083 1.34768 1.13799 1.21029 0.90693 0.95499 0.90486 1.19296 0.96312 0.95570 0.91860 1.22318 1.25128 1.17570 1.01175 0.93298 1.27337 1.01065 0.96359 0.98312 1.70926 1.25242 1.20695 1.40003 0.82935 0.73777 0.75108 0.74457 1.20671 1.19579 1.19605 1.21569 0.99296 1.00137 0.92701 0.91998 0.89294 0.91699 0.91481 0.88034 0.91254 0.91767 0.89203 0.92271 0.75225 0.89639 0.91856 0.90245 0.91321 0.91446 0.90398 0.75389 0.93789 0.93726 0.97520 0.97583 0.93134 0.91295 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 8.37 71.98 0.60 -2.02 16 2 C 0.12 1.93 1.13 -10.79 -0.01 1.92 16 3 C -0.14 -1.39 8.85 71.98 0.64 -0.75 16 4 C -0.18 -2.78 8.37 71.98 0.60 -2.18 16 5 O -0.37 -7.24 9.94 -55.47 -0.55 -7.79 16 6 C 0.65 13.58 8.02 129.79 1.04 14.62 16 7 O -0.59 -14.79 11.54 19.80 0.23 -14.56 16 8 N -0.70 -11.77 4.24 -570.13 -2.42 -14.19 16 9 C 0.17 2.89 2.78 44.99 0.13 3.02 16 10 H 0.09 1.66 7.58 -2.38 -0.02 1.64 16 11 C -0.13 -1.91 5.60 30.59 0.17 -1.74 16 12 C -0.11 -1.43 5.77 30.60 0.18 -1.25 16 13 C -0.11 -1.76 5.10 30.60 0.16 -1.61 16 14 C -0.10 -1.84 2.35 -11.54 -0.03 -1.87 16 15 H 0.11 1.72 6.51 -2.38 -0.02 1.71 16 16 C 0.51 15.39 7.15 87.66 0.63 16.02 16 17 O -0.59 -22.83 15.98 -3.04 -0.05 -22.87 16 18 N -0.72 -23.00 5.45 -463.06 -2.52 -25.52 16 19 C 0.15 6.19 5.61 86.38 0.48 6.67 16 20 C 0.01 0.34 4.40 29.85 0.13 0.48 16 21 C -0.62 -34.90 9.11 25.60 0.23 -34.67 16 22 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 23 C -0.03 -1.83 5.46 84.65 0.46 -1.36 16 24 N -0.93 -55.58 13.65 21.45 0.29 -55.29 16 25 Si 1.12 49.37 29.90 68.60 2.05 51.42 16 26 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 28 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 29 C -0.10 -1.88 4.18 30.59 0.13 -1.75 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 1.29 5.88 -2.39 -0.01 1.28 16 33 H 0.07 0.69 8.14 -2.38 -0.02 0.68 16 34 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 1.33 5.88 -2.38 -0.01 1.32 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.41 5.83 6.98 -92.71 -0.65 5.18 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.07 0.88 7.60 -2.39 -0.02 0.87 16 44 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.08 1.20 7.56 -2.38 -0.02 1.19 16 46 H 0.41 10.92 7.89 -92.71 -0.73 10.19 16 47 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.01 0.33 8.01 -2.39 -0.02 0.31 16 50 H 0.01 0.30 8.01 -2.38 -0.02 0.28 16 51 H 0.26 15.35 7.22 -92.71 -0.67 14.68 16 52 H 0.07 1.49 8.10 -2.39 -0.02 1.47 16 53 H 0.09 1.78 8.10 -2.39 -0.02 1.76 16 Total: -1.00 -71.86 413.20 2.20 -69.66 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: -0.38 Total: 25.63 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 5.54 Total: -6.48 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -4.65 Total: -95.00 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -0.37 Total: -45.23 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 2.05 Total: 51.42 kcal Total: -71.86 2.20 -69.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495138352.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.966 kcal (2) G-P(sol) polarization free energy of solvation -71.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds