Wall clock time and date at job start Sat Apr 11 2020 06:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47491 * 2 1 4 4 C 1.53009 * 109.47303 * 240.00109 * 2 1 3 5 5 O 1.45203 * 109.47394 * 120.00140 * 2 1 3 6 6 C 1.34633 * 116.99716 * 59.99646 * 5 2 1 7 7 O 1.21513 * 120.00347 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99964 * 180.02562 * 6 5 2 9 9 C 1.46500 * 120.00270 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47129 * 34.99540 * 9 8 6 11 11 C 1.52999 * 109.46944 * 275.00142 * 9 8 6 12 12 C 1.53005 * 109.47159 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47452 * 59.99536 * 12 11 9 14 14 C 1.53002 * 109.46817 * 300.00239 * 13 12 11 15 15 H 1.08992 * 109.47063 * 299.99823 * 14 13 12 16 16 C 1.50706 * 109.46783 * 179.97438 * 14 13 12 17 17 O 1.21273 * 120.00140 * 239.99787 * 16 14 13 18 18 N 1.34779 * 119.99767 * 60.00310 * 16 14 13 19 19 C 1.46496 * 120.00054 * 179.97438 * 18 16 14 20 20 C 1.52997 * 109.47194 * 179.97438 * 19 18 16 21 21 C 1.50703 * 109.47084 * 180.02562 * 20 19 18 22 22 H 1.07995 * 120.00280 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99788 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99508 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00233 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.46640 * 90.00143 * 25 23 21 27 27 H 1.48502 * 109.47279 * 210.00076 * 25 23 21 28 28 H 1.48501 * 109.47096 * 330.00344 * 25 23 21 29 29 C 1.52997 * 109.47473 * 154.99797 * 9 8 6 30 30 H 1.09000 * 109.47078 * 300.00244 * 1 2 3 31 31 H 1.09003 * 109.47198 * 60.00092 * 1 2 3 32 32 H 1.09002 * 109.47404 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47429 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.46824 * 300.00136 * 3 2 1 35 35 H 1.09003 * 109.46803 * 59.99440 * 3 2 1 36 36 H 1.08998 * 109.46685 * 300.00267 * 4 2 1 37 37 H 1.08997 * 109.46737 * 59.99931 * 4 2 1 38 38 H 1.08995 * 109.46806 * 180.02562 * 4 2 1 39 39 H 0.97000 * 120.00239 * 0.02562 * 8 6 5 40 40 H 1.09000 * 109.47486 * 59.99569 * 11 9 8 41 41 H 1.09002 * 109.46716 * 299.99651 * 11 9 8 42 42 H 1.09002 * 109.46935 * 299.99411 * 12 11 9 43 43 H 1.09001 * 109.46812 * 179.97438 * 12 11 9 44 44 H 1.08993 * 109.47194 * 179.97438 * 13 12 11 45 45 H 1.09002 * 109.46695 * 59.99734 * 13 12 11 46 46 H 0.97005 * 119.99680 * 359.97438 * 18 16 14 47 47 H 1.08998 * 109.47245 * 300.00495 * 19 18 16 48 48 H 1.09002 * 109.47021 * 59.99873 * 19 18 16 49 49 H 1.09001 * 109.47375 * 300.00051 * 20 19 18 50 50 H 1.09002 * 109.47045 * 60.00127 * 20 19 18 51 51 H 0.97002 * 119.99179 * 180.02562 * 24 23 21 52 52 H 1.09002 * 109.47153 * 59.99757 * 29 9 8 53 53 H 1.09001 * 109.46832 * 299.99948 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5035 8 7 2.0672 -2.6655 2.4171 9 6 1.6740 -4.0669 2.5830 10 1 1.6282 -4.5495 1.6067 11 6 0.2991 -4.1351 3.2506 12 6 -0.1114 -5.5988 3.4246 13 6 0.9173 -6.3163 4.3009 14 6 2.2922 -6.2480 3.6332 15 1 2.2465 -6.7309 2.6571 16 6 3.3056 -6.9542 4.4967 17 8 4.2616 -6.3468 4.9298 18 7 3.1493 -8.2610 4.7874 19 6 4.1346 -8.9477 5.6263 20 6 3.7240 -10.4111 5.8013 21 6 4.7373 -11.1173 6.6648 22 1 5.5887 -10.5764 7.0506 23 6 4.5773 -12.4541 6.9623 24 7 5.4614 -13.0702 7.7163 25 14 3.1043 -13.3896 6.2956 26 1 3.4483 -13.9795 4.9768 27 1 2.7365 -14.4734 7.2419 28 1 1.9573 -12.4597 6.1379 29 6 2.7025 -4.7849 3.4591 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7216 -1.2490 39 1 2.6263 -2.2364 3.0836 40 1 -0.4337 -3.6236 2.6265 41 1 0.3449 -3.6526 4.2269 42 1 -0.1571 -6.0818 2.4485 43 1 -1.0907 -5.6474 3.9006 44 1 0.6246 -7.3588 4.4252 45 1 0.9630 -5.8333 5.2770 46 1 2.3844 -8.7468 4.4411 47 1 5.1139 -8.8990 5.1504 48 1 4.1806 -8.4644 6.6023 49 1 2.7447 -10.4593 6.2775 50 1 3.6777 -10.8946 4.8254 51 1 5.3490 -14.0108 7.9252 52 1 2.7484 -4.3024 4.4353 53 1 3.6821 -4.7363 2.9834 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495138354.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:04 Heat of formation + Delta-G solvation = -176.833204 kcal Electronic energy + Delta-G solvation = -29964.588956 eV Core-core repulsion = 25833.958634 eV Total energy + Delta-G solvation = -4130.630322 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.91227 -41.16927 -39.37363 -37.77946 -36.62160 -35.58784 -34.85243 -34.60556 -32.45651 -31.61391 -30.32692 -28.34065 -28.28027 -27.00579 -24.76558 -24.12421 -22.74991 -22.58252 -21.43475 -21.29401 -20.55535 -19.12936 -18.98247 -18.32636 -17.48480 -17.14535 -16.86286 -16.56826 -16.22601 -16.09027 -15.89322 -15.51959 -15.41638 -15.23333 -14.96586 -14.72701 -14.51264 -14.44332 -14.06667 -13.65692 -13.46354 -13.33869 -13.30599 -13.10173 -13.01676 -12.89118 -12.84519 -12.56576 -12.38526 -12.32327 -12.19667 -12.16088 -12.13053 -11.75687 -11.68295 -11.62001 -11.50033 -11.49760 -11.35599 -11.05814 -10.78368 -10.70061 -10.15164 -10.01527 -8.29657 -6.37033 1.16407 1.39837 1.42422 1.53629 1.67518 1.77788 2.28977 2.37385 3.05629 3.13067 3.53793 3.71597 3.77058 3.79066 3.82158 3.96783 4.02856 4.16727 4.21772 4.37182 4.38336 4.42395 4.43617 4.47632 4.57148 4.63630 4.65006 4.74264 4.76196 4.78540 4.85979 4.89639 4.92505 5.03054 5.09844 5.13348 5.14362 5.17077 5.26415 5.28715 5.30188 5.30239 5.38658 5.41723 5.44932 5.50377 5.60617 5.66147 6.22601 6.41509 6.63517 6.72187 7.27506 7.32086 7.35741 8.87130 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.029431 B = 0.001731 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.149633 B =16170.660771 C =16579.822279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.125 3.875 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.372 6.372 6 C 0.647 3.353 7 O -0.589 6.589 8 N -0.701 5.701 9 C 0.171 3.829 10 H 0.086 0.914 11 C -0.127 4.127 12 C -0.106 4.106 13 C -0.111 4.111 14 C -0.091 4.091 15 H 0.122 0.878 16 C 0.510 3.490 17 O -0.590 6.590 18 N -0.715 5.715 19 C 0.144 3.856 20 C -0.013 4.013 21 C -0.541 4.541 22 H 0.027 0.973 23 C 0.004 3.996 24 N -0.951 5.951 25 Si 0.959 3.041 26 H -0.266 1.266 27 H -0.287 1.287 28 H -0.234 1.234 29 C -0.099 4.099 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.413 0.587 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.414 0.586 47 H 0.041 0.959 48 H 0.043 0.957 49 H 0.038 0.962 50 H 0.035 0.965 51 H 0.267 0.733 52 H 0.073 0.927 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.561 27.435 -18.017 36.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.088 3.912 3 C -0.194 4.194 4 C -0.237 4.237 5 O -0.287 6.287 6 C 0.400 3.600 7 O -0.480 6.480 8 N -0.359 5.359 9 C 0.068 3.932 10 H 0.104 0.896 11 C -0.166 4.166 12 C -0.144 4.144 13 C -0.149 4.149 14 C -0.113 4.113 15 H 0.140 0.860 16 C 0.298 3.702 17 O -0.471 6.471 18 N -0.366 5.366 19 C 0.020 3.980 20 C -0.051 4.051 21 C -0.579 4.579 22 H 0.045 0.955 23 C -0.193 4.193 24 N -0.591 5.591 25 Si 0.781 3.219 26 H -0.191 1.191 27 H -0.213 1.213 28 H -0.157 1.157 29 C -0.138 4.138 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.250 0.750 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.251 0.749 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.057 0.943 50 H 0.054 0.946 51 H 0.076 0.924 52 H 0.092 0.908 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.176 27.517 -18.089 36.689 hybrid contribution 0.289 -0.843 0.451 0.999 sum -15.887 26.674 -17.639 35.708 Atomic orbital electron populations 1.22459 0.93792 1.03774 1.03521 1.22400 0.94696 0.92600 0.81469 1.21890 1.02339 0.90857 1.04301 1.22477 1.01490 1.02326 0.97430 1.86320 1.71661 1.23278 1.47415 1.18241 0.78698 0.80789 0.82222 1.90888 1.42124 1.70811 1.44174 1.44847 1.55193 1.12586 1.23296 1.20912 0.94151 0.78312 0.99807 0.89626 1.21942 0.95502 0.98189 1.00953 1.21442 0.98688 0.93605 1.00661 1.21608 0.91481 1.02667 0.99110 1.21243 0.94299 0.95626 1.00136 0.86013 1.21254 0.86568 0.81797 0.80609 1.90674 1.34300 1.66828 1.55290 1.46084 1.28079 1.10480 1.52003 1.21003 0.91067 0.92833 0.93110 1.19652 0.96868 0.91590 0.96948 1.21278 1.09264 0.95700 1.31651 0.95462 1.26097 0.99880 0.98623 0.94745 1.70085 1.38185 1.11579 1.39241 0.85539 0.79751 0.78306 0.78276 1.19084 1.21346 1.15704 1.21473 0.98107 0.93614 1.00569 0.91993 0.89229 0.91739 0.91421 0.88009 0.91215 0.91802 0.89163 0.92248 0.75048 0.92044 0.91151 0.90494 0.89728 0.89546 0.91668 0.74934 0.94054 0.93905 0.94337 0.94635 0.92373 0.90806 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 8.37 71.98 0.60 -1.92 16 2 C 0.12 1.84 1.13 -10.79 -0.01 1.83 16 3 C -0.14 -1.24 8.85 71.98 0.64 -0.61 16 4 C -0.18 -2.69 8.37 71.99 0.60 -2.09 16 5 O -0.37 -7.05 9.94 -55.42 -0.55 -7.60 16 6 C 0.65 13.48 8.02 129.79 1.04 14.52 16 7 O -0.59 -14.60 11.54 19.80 0.23 -14.37 16 8 N -0.70 -11.96 5.08 -570.13 -2.90 -14.85 16 9 C 0.17 2.81 2.45 44.99 0.11 2.92 16 10 H 0.09 1.57 7.58 -2.39 -0.02 1.56 16 11 C -0.13 -1.82 5.50 30.60 0.17 -1.65 16 12 C -0.11 -1.24 5.92 30.60 0.18 -1.06 16 13 C -0.11 -1.59 5.10 30.59 0.16 -1.44 16 14 C -0.09 -1.69 2.53 -11.55 -0.03 -1.72 16 15 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 16 C 0.51 14.75 7.15 87.66 0.63 15.37 16 17 O -0.59 -22.61 15.98 -3.01 -0.05 -22.65 16 18 N -0.72 -20.99 5.45 -463.07 -2.52 -23.51 16 19 C 0.14 5.74 5.61 86.38 0.48 6.22 16 20 C -0.01 -0.56 4.16 29.85 0.12 -0.43 16 21 C -0.54 -30.66 9.66 25.60 0.25 -30.41 16 22 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 23 C 0.00 0.21 5.47 84.66 0.46 0.67 16 24 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 25 Si 0.96 41.76 27.47 68.60 1.88 43.64 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 28 H -0.23 -8.94 6.54 99.48 0.65 -8.29 16 29 C -0.10 -1.84 3.96 30.58 0.12 -1.72 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 1.25 5.88 -2.39 -0.01 1.24 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 1.30 5.88 -2.39 -0.01 1.29 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.41 5.81 8.71 -92.71 -0.81 5.01 16 40 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.09 1.07 7.56 -2.39 -0.02 1.05 16 45 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.41 9.21 7.89 -92.70 -0.73 8.48 16 47 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.04 1.56 7.20 -2.39 -0.02 1.55 16 50 H 0.04 1.43 7.57 -2.39 -0.02 1.42 16 51 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 52 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 53 H 0.07 1.42 8.10 -2.39 -0.02 1.40 16 Total: -1.00 -75.45 415.33 1.22 -74.23 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: -0.70 Total: 25.42 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 5.53 Total: -1.52 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -5.12 Total: -97.15 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -0.37 Total: -44.62 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.88 Total: 43.64 kcal Total: -75.45 1.22 -74.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495138354.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.601 kcal (2) G-P(sol) polarization free energy of solvation -75.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds