Wall clock time and date at job start Sat Apr 11 2020 06:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47018 * 2 1 4 4 C 1.52996 * 109.47063 * 240.00390 * 2 1 3 5 5 O 1.45196 * 109.46917 * 120.00155 * 2 1 3 6 6 C 1.34631 * 117.00030 * 60.00315 * 5 2 1 7 7 O 1.21514 * 120.00298 * 359.97438 * 6 5 2 8 8 N 1.34778 * 120.00128 * 179.97438 * 6 5 2 9 9 C 1.46503 * 120.00243 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47068 * 175.00131 * 9 8 6 11 11 C 1.50695 * 110.43688 * 64.73113 * 10 9 8 12 12 O 1.21288 * 119.99696 * 242.47698 * 11 10 9 13 13 N 1.34773 * 120.00233 * 62.47600 * 11 10 9 14 14 C 1.46504 * 119.99894 * 174.90291 * 13 11 10 15 15 C 1.53004 * 109.46882 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47162 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99818 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00233 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99508 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00321 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46674 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47433 * 119.99162 * 20 18 16 23 23 H 1.48499 * 109.46971 * 239.99876 * 20 18 16 24 24 C 1.54888 * 110.59818 * 187.34919 * 10 9 8 25 25 C 1.54889 * 102.75085 * 156.67583 * 24 10 9 26 26 C 1.54268 * 104.19400 * 322.05535 * 25 24 10 27 27 C 1.53875 * 106.59730 * 23.60941 * 26 25 24 28 28 H 1.08995 * 109.46671 * 299.99695 * 1 2 3 29 29 H 1.08997 * 109.46555 * 59.99866 * 1 2 3 30 30 H 1.08995 * 109.47010 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47274 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47533 * 300.00063 * 3 2 1 33 33 H 1.09003 * 109.46933 * 60.00388 * 3 2 1 34 34 H 1.09005 * 109.47305 * 299.99841 * 4 2 1 35 35 H 1.09004 * 109.47268 * 59.99868 * 4 2 1 36 36 H 1.09005 * 109.47394 * 180.02562 * 4 2 1 37 37 H 0.96997 * 119.99919 * 0.02562 * 8 6 5 38 38 H 1.09003 * 109.47129 * 54.99592 * 9 8 6 39 39 H 1.08999 * 109.47162 * 295.00043 * 9 8 6 40 40 H 0.96998 * 120.00081 * 354.89932 * 13 11 10 41 41 H 1.08993 * 109.47473 * 59.99905 * 14 13 11 42 42 H 1.09004 * 109.47235 * 299.99400 * 14 13 11 43 43 H 1.09004 * 109.47149 * 299.99449 * 15 14 13 44 44 H 1.09003 * 109.47142 * 59.99711 * 15 14 13 45 45 H 0.97001 * 119.99342 * 180.02562 * 19 18 16 46 46 H 1.09001 * 110.75465 * 274.99185 * 24 10 9 47 47 H 1.09001 * 110.75943 * 38.35477 * 24 10 9 48 48 H 1.09005 * 110.48617 * 203.37553 * 25 24 10 49 49 H 1.08995 * 110.49021 * 80.73757 * 25 24 10 50 50 H 1.08998 * 110.03230 * 264.32431 * 26 25 24 51 51 H 1.08994 * 110.03012 * 142.89627 * 26 25 24 52 52 H 1.08999 * 110.03243 * 240.71167 * 27 26 25 53 53 H 1.09002 * 110.02653 * 119.28546 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9510 -2.5095 0.5039 8 7 2.0681 -2.6658 2.4165 9 6 1.6740 -4.0669 2.5830 10 6 2.3744 -4.6512 3.8113 11 6 1.9036 -3.9591 5.0644 12 8 2.6901 -3.3337 5.7437 13 7 0.6087 -4.0351 5.4303 14 6 0.1725 -3.4580 6.7042 15 6 -1.3317 -3.6796 6.8759 16 6 -1.7804 -3.0865 8.1867 17 1 -1.0643 -2.6005 8.8328 18 6 -3.1049 -3.1652 8.5615 19 7 -3.9768 -3.7574 7.7749 20 14 -3.6610 -2.4307 10.1865 21 1 -2.4958 -1.8265 10.8811 22 1 -4.6836 -1.3843 9.9327 23 1 -4.2454 -3.4979 11.0378 24 6 2.1234 -6.1766 3.9076 25 6 3.3211 -6.6671 4.7586 26 6 4.5075 -5.8097 4.2715 27 6 3.9056 -4.5281 3.6692 28 1 -0.3632 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2073 -2.1393 36 1 3.1301 -0.7216 -1.2491 37 1 2.6276 -2.2369 3.0827 38 1 1.9617 -4.6330 1.6970 39 1 0.5940 -4.1271 2.7177 40 1 -0.0344 -4.4717 4.8501 41 1 0.3857 -2.3891 6.7109 42 1 0.7061 -3.9401 7.5233 43 1 -1.8658 -3.1977 6.0570 44 1 -1.5445 -4.7486 6.8694 45 1 -4.9087 -3.8125 8.0384 46 1 1.1801 -6.3816 4.4139 47 1 2.1394 -6.6340 2.9183 48 1 3.5129 -7.7241 4.5738 49 1 3.1334 -6.4921 5.8179 50 1 5.0716 -6.3503 3.5115 51 1 5.1563 -5.5590 5.1107 52 1 4.1776 -4.4466 2.6169 53 1 4.2624 -3.6553 4.2162 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495250414.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:17 Heat of formation + Delta-G solvation = -171.277178 kcal Electronic energy + Delta-G solvation = -31154.885912 eV Core-core repulsion = 27024.496518 eV Total energy + Delta-G solvation = -4130.389394 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.05242 -41.42018 -38.75835 -38.02569 -36.59792 -35.82117 -34.92426 -34.77880 -32.06439 -30.77845 -29.59664 -28.35108 -28.29139 -26.94686 -26.11948 -23.79272 -23.22670 -22.67120 -21.48527 -20.96733 -20.25436 -19.30582 -18.53482 -18.08493 -17.56168 -17.24902 -16.88804 -16.77779 -16.49968 -16.16655 -15.90198 -15.76525 -15.47037 -15.17766 -14.76645 -14.65971 -14.45021 -14.35837 -14.21982 -13.83854 -13.35067 -13.23897 -13.09522 -12.97934 -12.90052 -12.85926 -12.56989 -12.49484 -12.47558 -12.37581 -12.29207 -12.21462 -12.10568 -12.00928 -11.90747 -11.67635 -11.45877 -11.38736 -11.28781 -11.12800 -10.73722 -10.62941 -10.27418 -10.02377 -8.25979 -6.36569 1.13498 1.39212 1.40258 1.53205 1.57639 1.73924 2.19675 2.42626 3.07865 3.08805 3.37282 3.46710 3.61053 3.75816 3.80852 3.87054 3.95587 4.20799 4.28760 4.44909 4.45768 4.49062 4.52268 4.55687 4.61235 4.63272 4.68920 4.74997 4.77396 4.81084 4.82477 4.86457 4.88473 4.92194 5.04094 5.08134 5.12289 5.19457 5.25198 5.28562 5.29495 5.30244 5.36089 5.46070 5.51172 5.54017 5.55334 5.76655 6.13950 6.28424 6.58307 6.76827 7.22201 7.27869 7.32963 8.85972 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008100 B = 0.003166 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3455.900011 B = 8840.735237 C =11377.480295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.123 3.877 3 C -0.137 4.137 4 C -0.176 4.176 5 O -0.374 6.374 6 C 0.648 3.352 7 O -0.586 6.586 8 N -0.707 5.707 9 C 0.155 3.845 10 C -0.087 4.087 11 C 0.519 3.481 12 O -0.577 6.577 13 N -0.716 5.716 14 C 0.143 3.857 15 C 0.024 3.976 16 C -0.546 4.546 17 H 0.058 0.942 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.964 3.036 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.276 1.276 24 C -0.105 4.105 25 C -0.126 4.126 26 C -0.118 4.118 27 C -0.106 4.106 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.409 0.591 38 H 0.106 0.894 39 H 0.068 0.932 40 H 0.406 0.594 41 H 0.043 0.957 42 H 0.048 0.952 43 H 0.003 0.997 44 H 0.010 0.990 45 H 0.266 0.734 46 H 0.072 0.928 47 H 0.115 0.885 48 H 0.093 0.907 49 H 0.041 0.959 50 H 0.089 0.911 51 H 0.054 0.946 52 H 0.091 0.909 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.842 0.229 -18.761 24.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.087 3.913 3 C -0.194 4.194 4 C -0.233 4.233 5 O -0.289 6.289 6 C 0.402 3.598 7 O -0.477 6.477 8 N -0.366 5.366 9 C 0.032 3.968 10 C -0.091 4.091 11 C 0.306 3.694 12 O -0.457 6.457 13 N -0.366 5.366 14 C 0.019 3.981 15 C -0.013 4.013 16 C -0.584 4.584 17 H 0.076 0.924 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.789 3.211 21 H -0.190 1.190 22 H -0.203 1.203 23 H -0.201 1.201 24 C -0.143 4.143 25 C -0.163 4.163 26 C -0.155 4.155 27 C -0.144 4.144 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.244 0.756 38 H 0.124 0.876 39 H 0.086 0.914 40 H 0.242 0.758 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.022 0.978 44 H 0.028 0.972 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.133 0.867 48 H 0.111 0.889 49 H 0.060 0.940 50 H 0.108 0.892 51 H 0.073 0.927 52 H 0.110 0.890 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.862 0.427 -18.728 24.546 hybrid contribution -0.916 0.436 1.240 1.602 sum 14.946 0.863 -17.488 23.021 Atomic orbital electron populations 1.22496 0.94381 1.03721 1.03348 1.22443 0.94323 0.92811 0.81714 1.21895 1.02541 0.90809 1.04150 1.22448 1.01724 1.02263 0.96871 1.86327 1.71580 1.23238 1.47718 1.18164 0.78643 0.80824 0.82196 1.90888 1.41763 1.70929 1.44126 1.44797 1.55391 1.12933 1.23460 1.21440 0.99109 0.78838 0.97380 1.21948 0.98583 0.98105 0.90451 1.20842 0.81590 0.79814 0.87113 1.90649 1.54861 1.43821 1.56341 1.46142 1.09493 1.58704 1.22258 1.21191 0.96144 0.96635 0.84096 1.19117 0.89633 0.96366 0.96233 1.21480 0.94322 1.37550 1.05065 0.92381 1.25869 0.96792 0.95523 1.00976 1.70069 1.03374 1.44287 1.38790 0.85406 0.78355 0.78264 0.79092 1.18953 1.20292 1.20107 1.22641 0.99378 0.89148 1.03111 1.22372 0.94537 1.00942 0.98466 1.22088 0.97688 0.95090 1.00652 1.22158 0.90236 0.99674 1.02343 0.92864 0.88781 0.91824 0.90941 0.87693 0.91910 0.91656 0.88979 0.91663 0.75589 0.87563 0.91357 0.75813 0.93903 0.93377 0.97816 0.97193 0.92549 0.90887 0.86708 0.88859 0.93997 0.89241 0.92745 0.89049 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.91 8.37 71.98 0.60 -3.31 16 2 C 0.12 2.50 1.13 -10.79 -0.01 2.49 16 3 C -0.14 -1.97 8.85 71.98 0.64 -1.33 16 4 C -0.18 -3.15 8.37 71.98 0.60 -2.55 16 5 O -0.37 -9.61 9.94 -55.41 -0.55 -10.16 16 6 C 0.65 17.71 8.06 129.79 1.05 18.75 16 7 O -0.59 -17.72 11.88 19.80 0.24 -17.49 16 8 N -0.71 -17.19 5.11 -590.85 -3.02 -20.21 16 9 C 0.15 3.26 4.45 86.38 0.38 3.65 16 10 C -0.09 -1.88 0.45 -51.86 -0.02 -1.90 16 11 C 0.52 16.30 5.79 87.66 0.51 16.81 16 12 O -0.58 -22.23 15.43 -3.05 -0.05 -22.28 16 13 N -0.72 -24.42 5.20 -463.05 -2.41 -26.82 16 14 C 0.14 6.14 5.62 86.38 0.49 6.63 16 15 C 0.02 1.21 5.09 29.85 0.15 1.37 16 16 C -0.55 -30.64 9.11 25.60 0.23 -30.41 16 17 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 18 C 0.01 0.41 5.46 84.65 0.46 0.87 16 19 N -0.93 -54.51 13.29 21.45 0.28 -54.23 16 20 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 C -0.10 -1.81 5.80 31.88 0.18 -1.62 16 25 C -0.13 -2.27 6.61 31.67 0.21 -2.06 16 26 C -0.12 -2.04 6.80 31.32 0.21 -1.83 16 27 C -0.11 -2.08 5.07 31.32 0.16 -1.92 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.71 5.88 -2.39 -0.01 1.69 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.50 5.88 -2.38 -0.01 1.49 16 35 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.41 10.17 7.90 -92.71 -0.73 9.44 16 38 H 0.11 1.85 8.08 -2.39 -0.02 1.83 16 39 H 0.07 1.56 7.57 -2.39 -0.02 1.55 16 40 H 0.41 12.35 7.64 -92.71 -0.71 11.64 16 41 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 44 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 46 H 0.07 1.38 7.53 -2.39 -0.02 1.36 16 47 H 0.11 1.32 8.02 -2.39 -0.02 1.30 16 48 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 49 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 51 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.09 1.43 7.84 -2.39 -0.02 1.41 16 53 H 0.06 1.57 6.82 -2.39 -0.02 1.55 16 Total: -1.00 -70.39 418.06 1.82 -68.56 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: -0.54 Total: 33.14 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 5.84 Total: 3.64 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -5.14 Total: -101.26 kcal Atomic # 8 Polarization: -49.56 SS G_CDS: -0.36 Total: -49.93 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -70.39 1.82 -68.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495250414.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.716 kcal (2) G-P(sol) polarization free energy of solvation -70.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds