Wall clock time and date at job start Sat Apr 11 2020 06:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 119.99805 * 2 1 4 4 C 1.52997 * 109.47442 * 270.00287 * 3 2 1 5 5 C 1.53000 * 109.47018 * 180.02562 * 4 3 2 6 6 C 1.53353 * 109.42066 * 295.12667 * 5 4 3 7 7 C 1.53188 * 109.15114 * 178.67793 * 6 5 4 8 8 N 1.46922 * 108.89394 * 54.57762 * 7 6 5 9 9 C 1.34776 * 120.62898 * 126.34399 * 8 7 6 10 10 O 1.21689 * 120.00329 * 354.75880 * 9 8 7 11 11 C 1.46378 * 119.99861 * 174.75957 * 9 8 7 12 12 H 1.07998 * 119.99844 * 5.00940 * 11 9 8 13 13 C 1.40048 * 119.99682 * 185.00494 * 11 9 8 14 14 N 1.30671 * 120.00214 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 119.99758 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47531 * 89.99985 * 15 13 11 17 17 H 1.48499 * 109.47224 * 210.00300 * 15 13 11 18 18 H 1.48503 * 109.47314 * 330.00155 * 15 13 11 19 19 C 1.46923 * 118.74131 * 306.32015 * 8 7 6 20 20 C 1.53045 * 109.45960 * 175.00286 * 5 4 3 21 21 C 1.34773 * 120.00222 * 180.02562 * 2 1 3 22 22 O 1.21509 * 120.00302 * 179.97438 * 21 2 1 23 23 O 1.34644 * 119.99851 * 359.97438 * 21 2 1 24 24 C 1.45205 * 116.99997 * 180.02562 * 23 21 2 25 25 C 1.53002 * 109.46861 * 60.00071 * 24 23 21 26 26 C 1.52998 * 109.47351 * 179.97438 * 24 23 21 27 27 C 1.52998 * 109.46910 * 300.00321 * 24 23 21 28 28 H 1.08997 * 109.47450 * 89.99600 * 1 2 3 29 29 H 1.09003 * 109.46619 * 209.99397 * 1 2 3 30 30 H 1.08994 * 109.47412 * 329.99214 * 1 2 3 31 31 H 1.08997 * 109.47042 * 150.00251 * 3 2 1 32 32 H 1.08996 * 109.47023 * 30.00526 * 3 2 1 33 33 H 1.08997 * 109.47032 * 59.99957 * 4 3 2 34 34 H 1.08996 * 109.47206 * 300.00127 * 4 3 2 35 35 H 1.08995 * 109.46257 * 55.02793 * 5 4 3 36 36 H 1.09005 * 109.68105 * 58.70819 * 6 5 4 37 37 H 1.09003 * 109.47310 * 298.51792 * 6 5 4 38 38 H 1.08999 * 109.58478 * 294.72229 * 7 6 5 39 39 H 1.08999 * 109.58399 * 174.44034 * 7 6 5 40 40 H 0.96998 * 119.99786 * 180.02562 * 14 13 11 41 41 H 1.08995 * 109.58992 * 173.39368 * 19 8 7 42 42 H 1.08999 * 109.59224 * 293.68124 * 19 8 7 43 43 H 1.09003 * 109.49640 * 61.43151 * 20 5 4 44 44 H 1.09000 * 109.51983 * 301.35243 * 20 5 4 45 45 H 1.08992 * 109.47145 * 59.99898 * 25 24 23 46 46 H 1.08999 * 109.46828 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47175 * 299.99494 * 25 24 23 48 48 H 1.09009 * 109.46944 * 59.99771 * 26 24 23 49 49 H 1.08986 * 109.47222 * 179.97438 * 26 24 23 50 50 H 1.08999 * 109.46665 * 300.00510 * 26 24 23 51 51 H 1.09001 * 109.47819 * 60.00082 * 27 24 23 52 52 H 1.09002 * 109.46873 * 180.02562 * 27 24 23 53 53 H 1.09002 * 109.47322 * 299.99447 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4424 5 6 3.2179 3.0352 -1.4423 6 6 2.3394 4.1318 -0.8279 7 6 3.1235 5.4475 -0.8006 8 7 3.6015 5.7448 -2.1577 9 6 3.3333 6.9325 -2.7353 10 8 2.6104 7.7335 -2.1725 11 6 3.9116 7.2591 -4.0398 12 1 4.4864 6.5188 -4.5763 13 6 3.7193 8.5317 -4.5921 14 7 3.0241 9.4275 -3.9428 15 14 4.4566 8.9482 -6.2572 16 1 3.4850 8.6091 -7.3277 17 1 4.7671 10.3994 -6.3120 18 1 5.7041 8.1673 -6.4555 19 6 4.3778 4.7228 -2.8730 20 6 3.5817 3.4140 -2.8799 21 6 2.1389 -1.1671 -0.0005 22 8 3.3540 -1.1672 -0.0010 23 8 1.4657 -2.3332 -0.0005 24 6 2.2566 -3.5510 -0.0005 25 6 3.1392 -3.5858 1.2488 26 6 1.3246 -4.7644 0.0001 27 6 3.1393 -3.5858 -1.2497 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8898 0.5139 31 1 3.1499 1.1384 0.5138 32 1 1.6084 2.0283 0.5139 33 1 1.5000 1.8408 -1.9562 34 1 3.0415 0.9509 -1.9563 35 1 4.1288 2.9282 -0.8534 36 1 2.0612 3.8528 0.1884 37 1 1.4398 4.2568 -1.4305 38 1 3.9745 5.3517 -0.1263 39 1 2.4741 6.2528 -0.4573 40 1 2.8906 10.3088 -4.3256 41 1 4.5540 5.0487 -3.8980 42 1 5.3322 4.5697 -2.3691 43 1 2.6703 3.5456 -3.4631 44 1 4.1862 2.6228 -3.3231 45 1 2.5104 -3.5609 2.1387 46 1 3.7332 -4.4997 1.2485 47 1 3.8032 -2.7214 1.2487 48 1 0.6954 -4.7397 -0.8897 49 1 1.9183 -5.6784 -0.0003 50 1 0.6961 -4.7392 0.8903 51 1 3.8033 -2.7214 -1.2498 52 1 3.7326 -4.5002 -1.2499 53 1 2.5105 -3.5610 -2.1398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495552078.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:29 Heat of formation + Delta-G solvation = -150.489333 kcal Electronic energy + Delta-G solvation = -30646.940133 eV Core-core repulsion = 26517.452167 eV Total energy + Delta-G solvation = -4129.487966 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.84746 -40.41259 -38.95255 -37.91291 -36.65073 -35.14695 -34.68651 -34.25736 -32.00298 -30.72109 -28.40328 -28.34143 -28.26225 -27.62095 -26.20392 -24.13895 -23.65231 -22.22391 -21.60244 -20.46168 -20.33246 -18.84116 -18.42296 -17.80269 -17.65602 -17.30145 -16.37265 -16.21647 -15.97644 -15.85637 -15.51517 -15.45457 -15.19567 -14.88940 -14.52324 -14.45194 -14.22804 -14.16202 -13.92458 -13.50463 -13.36500 -13.25989 -13.18017 -13.08817 -13.06092 -12.83586 -12.79951 -12.74430 -12.70441 -12.51458 -12.40433 -12.25523 -12.11584 -11.94336 -11.90290 -11.65964 -11.36455 -11.29878 -11.13278 -11.01668 -10.92706 -9.80476 -9.71517 -9.03175 -8.28329 -6.82621 1.17524 1.39292 1.40728 1.55724 1.77564 2.24083 2.46944 2.87559 2.91728 3.58763 3.77644 3.80324 3.82813 3.84192 3.95411 3.97461 4.09601 4.29014 4.34387 4.40662 4.47904 4.54252 4.58240 4.60949 4.63561 4.66686 4.69647 4.73437 4.78560 4.85771 4.89316 4.90285 4.93384 4.96878 5.00352 5.01285 5.14163 5.15054 5.17519 5.22584 5.30428 5.30673 5.34448 5.41060 5.48187 5.52869 5.58137 5.81606 6.16870 6.32029 6.46558 6.88870 7.30180 7.45424 8.48764 8.68622 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025241 B = 0.001970 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.034925 B =14206.361751 C =14695.916619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.599 5.599 3 C 0.131 3.869 4 C -0.114 4.114 5 C -0.071 4.071 6 C -0.114 4.114 7 C 0.113 3.887 8 N -0.645 5.645 9 C 0.540 3.460 10 O -0.635 6.635 11 C -0.570 4.570 12 H 0.092 0.908 13 C 0.027 3.973 14 N -0.823 5.823 15 Si 0.995 3.005 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.248 1.248 19 C 0.117 3.883 20 C -0.119 4.119 21 C 0.643 3.357 22 O -0.592 6.592 23 O -0.366 6.366 24 C 0.124 3.876 25 C -0.178 4.178 26 C -0.134 4.134 27 C -0.179 4.179 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.047 0.953 40 H 0.273 0.727 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.089 0.911 47 H 0.060 0.940 48 H 0.068 0.932 49 H 0.100 0.900 50 H 0.070 0.930 51 H 0.060 0.940 52 H 0.089 0.911 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.031 -29.216 7.164 30.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.339 5.339 3 C 0.010 3.990 4 C -0.152 4.152 5 C -0.091 4.091 6 C -0.152 4.152 7 C -0.010 4.010 8 N -0.382 5.382 9 C 0.346 3.654 10 O -0.523 6.523 11 C -0.606 4.606 12 H 0.110 0.890 13 C -0.187 4.187 14 N -0.453 5.453 15 Si 0.814 3.186 16 H -0.187 1.187 17 H -0.198 1.198 18 H -0.171 1.171 19 C -0.006 4.006 20 C -0.158 4.158 21 C 0.398 3.602 22 O -0.483 6.483 23 O -0.281 6.281 24 C 0.087 3.913 25 C -0.236 4.236 26 C -0.191 4.191 27 C -0.237 4.237 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.081 0.919 46 H 0.107 0.893 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.119 0.881 50 H 0.089 0.911 51 H 0.079 0.921 52 H 0.108 0.892 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.136 -28.718 7.512 29.849 hybrid contribution 0.258 0.798 -0.646 1.059 sum -2.879 -27.919 6.865 28.895 Atomic orbital electron populations 1.21958 0.76907 1.04551 1.02862 1.46911 1.08411 1.03111 1.75476 1.21667 0.97751 0.82287 0.97284 1.21825 1.00475 0.95921 0.97017 1.21024 0.98635 0.93275 0.96127 1.21980 0.97794 0.93562 1.01863 1.21303 0.97811 0.97266 0.84652 1.48049 1.58022 1.16039 1.16068 1.18642 0.80230 0.79698 0.86790 1.90527 1.43184 1.50793 1.67751 1.21521 1.35824 0.99797 1.03505 0.88978 1.26998 0.93439 0.95391 1.02906 1.70195 1.31669 1.04685 1.38738 0.85066 0.79491 0.78039 0.76010 1.18651 1.19840 1.17102 1.21588 0.93624 0.87618 0.97742 1.21900 1.00193 0.96602 0.97076 1.18267 0.83907 0.81867 0.76167 1.90889 1.13394 1.87215 1.56762 1.86309 1.41309 1.13978 1.86482 1.22394 0.91585 0.80881 0.96398 1.22458 1.00390 1.04218 0.96494 1.21868 0.99387 0.94265 1.03624 1.22462 1.00422 1.04203 0.96573 0.92147 0.90093 0.88915 0.90468 0.87634 0.91653 0.92532 0.90345 0.88646 0.93383 0.92386 0.93413 0.91682 0.90483 0.92333 0.93197 0.89507 0.91921 0.89255 0.92096 0.91316 0.88120 0.91080 0.92100 0.89228 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.05 10.49 127.77 1.34 2.39 16 2 N -0.60 -11.63 2.87 -977.28 -2.81 -14.43 16 3 C 0.13 2.50 5.21 86.38 0.45 2.95 16 4 C -0.11 -2.44 5.01 30.59 0.15 -2.29 16 5 C -0.07 -1.79 2.15 -10.66 -0.02 -1.82 16 6 C -0.11 -3.26 5.16 30.78 0.16 -3.10 16 7 C 0.11 4.43 6.43 86.36 0.56 4.99 16 8 N -0.65 -29.97 2.97 -824.02 -2.45 -32.42 16 9 C 0.54 32.13 7.62 86.36 0.66 32.79 16 10 O -0.63 -43.54 14.45 -4.31 -0.06 -43.60 16 11 C -0.57 -32.71 8.86 24.83 0.22 -32.49 16 12 H 0.09 4.73 5.69 -2.91 -0.02 4.72 16 13 C 0.03 1.55 5.50 85.30 0.47 2.02 16 14 N -0.82 -51.18 11.84 21.84 0.26 -50.92 16 15 Si 0.99 41.42 29.56 68.60 2.03 43.45 16 16 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 17 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 19 C 0.12 4.32 6.31 86.36 0.55 4.87 16 20 C -0.12 -3.47 5.36 30.67 0.16 -3.31 16 21 C 0.64 15.04 7.70 129.79 1.00 16.04 16 22 O -0.59 -16.70 11.46 19.81 0.23 -16.47 16 23 O -0.37 -7.40 8.71 -55.53 -0.48 -7.88 16 24 C 0.12 1.99 1.13 -10.79 -0.01 1.98 16 25 C -0.18 -2.85 8.37 71.98 0.60 -2.24 16 26 C -0.13 -1.29 8.85 71.98 0.64 -0.65 16 27 C -0.18 -3.01 8.37 71.98 0.60 -2.41 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.99 7.37 -2.39 -0.02 0.97 16 30 H 0.09 0.91 7.89 -2.39 -0.02 0.89 16 31 H 0.08 1.66 7.42 -2.39 -0.02 1.65 16 32 H 0.11 1.61 6.29 -2.39 -0.02 1.59 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.10 2.08 6.52 -2.38 -0.02 2.06 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 39 H 0.05 2.19 6.99 -2.39 -0.02 2.18 16 40 H 0.27 15.39 8.29 -92.71 -0.77 14.62 16 41 H 0.08 3.03 5.37 -2.39 -0.01 3.02 16 42 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 46 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.06 1.34 5.88 -2.39 -0.01 1.33 16 48 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 49 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.06 1.40 5.88 -2.39 -0.01 1.38 16 52 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 53 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -81.90 409.59 5.11 -76.78 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.88 Total: 25.78 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 7.52 Total: 19.72 kcal Atomic # 7 Polarization: -92.78 SS G_CDS: -5.00 Total: -97.78 kcal Atomic # 8 Polarization: -67.64 SS G_CDS: -0.32 Total: -67.96 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -81.90 5.11 -76.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495552078.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.705 kcal (2) G-P(sol) polarization free energy of solvation -81.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds