Wall clock time and date at job start Sat Apr 11 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47302 * 2 1 4 4 C 1.53004 * 109.46988 * 240.00030 * 2 1 3 5 5 O 1.45194 * 109.47396 * 120.00026 * 2 1 3 6 6 C 1.34636 * 117.00490 * 59.99749 * 5 2 1 7 7 O 1.21523 * 119.99330 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00772 * 179.97438 * 6 5 2 9 9 C 1.47425 * 125.64431 * 359.96482 * 8 6 5 10 10 C 1.54912 * 104.83100 * 204.15911 * 9 8 6 11 11 C 1.55402 * 101.66398 * 323.07654 * 10 9 8 12 12 C 1.47026 * 125.65163 * 179.97438 * 8 6 5 13 13 H 1.09003 * 109.87586 * 59.33807 * 12 8 6 14 14 C 1.50696 * 109.88069 * 298.33066 * 12 8 6 15 15 O 1.21277 * 120.00489 * 341.70983 * 14 12 8 16 16 N 1.34780 * 119.99828 * 161.71638 * 14 12 8 17 17 C 1.46498 * 120.00160 * 180.26953 * 16 14 12 18 18 C 1.53001 * 109.47114 * 179.72600 * 17 16 14 19 19 C 1.53004 * 109.46714 * 299.99761 * 18 17 16 20 20 C 1.52991 * 109.47268 * 59.99995 * 18 17 16 21 21 C 1.50703 * 109.46830 * 180.02562 * 18 17 16 22 22 H 1.08001 * 120.00088 * 357.00278 * 21 18 17 23 23 C 1.37882 * 119.99683 * 177.00678 * 21 18 17 24 24 N 1.31513 * 119.99838 * 5.53938 * 23 21 18 25 25 Si 1.86801 * 119.99929 * 185.54184 * 23 21 18 26 26 H 1.48505 * 109.47170 * 84.99604 * 25 23 21 27 27 H 1.48494 * 109.47185 * 204.99940 * 25 23 21 28 28 H 1.48507 * 109.47060 * 324.99904 * 25 23 21 29 29 H 1.09002 * 109.46918 * 300.00306 * 1 2 3 30 30 H 1.09002 * 109.47433 * 60.00018 * 1 2 3 31 31 H 1.08999 * 109.47358 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47156 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46862 * 300.00332 * 3 2 1 34 34 H 1.08999 * 109.46900 * 59.99837 * 3 2 1 35 35 H 1.08999 * 109.46782 * 299.99999 * 4 2 1 36 36 H 1.09002 * 109.47073 * 59.99732 * 4 2 1 37 37 H 1.09001 * 109.46773 * 179.97438 * 4 2 1 38 38 H 1.08995 * 110.36861 * 322.99463 * 9 8 6 39 39 H 1.08994 * 110.36929 * 85.32235 * 9 8 6 40 40 H 1.09000 * 111.00290 * 81.06392 * 10 9 8 41 41 H 1.08994 * 111.00956 * 204.87634 * 10 9 8 42 42 H 1.08995 * 110.69513 * 277.04151 * 11 10 9 43 43 H 1.09010 * 110.85263 * 153.69906 * 11 10 9 44 44 H 0.97000 * 119.99730 * 0.02562 * 16 14 12 45 45 H 1.08996 * 109.47301 * 299.72811 * 17 16 14 46 46 H 1.09000 * 109.47234 * 59.72412 * 17 16 14 47 47 H 1.08997 * 109.47080 * 53.93861 * 19 18 17 48 48 H 1.09008 * 109.46594 * 173.93604 * 19 18 17 49 49 H 1.08997 * 109.47682 * 293.93039 * 19 18 17 50 50 H 1.09005 * 109.47350 * 59.99994 * 20 18 17 51 51 H 1.08998 * 109.47301 * 179.97438 * 20 18 17 52 52 H 1.09003 * 109.47561 * 300.00103 * 20 18 17 53 53 H 0.96999 * 119.99616 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0682 -2.6657 2.4166 9 6 2.9190 -2.1406 3.5000 10 6 3.6012 -3.3907 4.1097 11 6 2.4616 -4.4437 4.0240 12 6 1.7486 -4.0711 2.7072 13 1 2.1076 -4.7076 1.8984 14 6 0.2591 -4.2357 2.8660 15 8 -0.4385 -3.2673 3.0813 16 7 -0.2978 -5.4592 2.7691 17 6 -1.7465 -5.6185 2.9176 18 6 -2.1163 -7.0946 2.7582 19 6 -1.6893 -7.5803 1.3716 20 6 -1.4001 -7.9184 3.8302 21 6 -3.6066 -7.2583 2.9104 22 1 -4.2221 -6.4037 3.1497 23 6 -4.1843 -8.4992 2.7444 24 7 -3.4263 -9.5582 2.5614 25 14 -6.0436 -8.6760 2.7793 26 1 -6.5929 -8.3970 1.4280 27 1 -6.4018 -10.0594 3.1832 28 1 -6.6143 -7.7122 3.7543 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7208 -1.2495 38 1 3.6677 -1.4583 3.0976 39 1 2.3099 -1.6370 4.2505 40 1 4.4597 -3.6976 3.5124 41 1 3.8921 -3.2114 5.1447 42 1 1.7825 -4.3461 4.8709 43 1 2.8694 -5.4532 3.9698 44 1 0.2602 -6.2338 2.5974 45 1 -2.0507 -5.2723 3.9054 46 1 -2.2568 -5.0316 2.1539 47 1 -0.6320 -7.3632 1.2202 48 1 -1.8538 -8.6553 1.2967 49 1 -2.2780 -7.0688 0.6101 50 1 -1.7042 -7.5722 4.8180 51 1 -1.6639 -8.9699 3.7169 52 1 -0.3221 -7.7999 3.7197 53 1 -3.8328 -10.4311 2.4442 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495878546.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:19 Heat of formation + Delta-G solvation = -140.333718 kcal Electronic energy + Delta-G solvation = -31852.666826 eV Core-core repulsion = 27723.619240 eV Total energy + Delta-G solvation = -4129.047585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.09802 -40.96184 -39.19082 -37.94475 -37.53981 -35.15241 -35.01081 -32.93131 -32.42055 -30.64647 -28.41352 -28.30810 -27.58574 -27.48693 -26.78801 -25.41670 -23.12500 -22.60923 -21.35109 -20.68002 -20.32627 -19.19145 -18.65479 -17.84712 -17.69150 -17.07958 -16.80464 -16.47773 -16.36279 -16.17942 -15.69148 -15.34030 -14.98273 -14.83177 -14.65326 -14.52077 -14.15012 -14.09340 -14.02211 -13.53797 -13.36221 -13.29656 -13.13998 -13.07181 -12.92566 -12.88270 -12.81617 -12.68846 -12.62673 -12.46494 -12.29903 -12.25944 -12.18755 -12.15473 -11.80324 -11.50672 -11.42202 -11.30434 -11.13736 -10.95706 -10.73235 -10.41170 -9.98530 -9.82799 -8.05280 -6.19651 0.92531 1.40435 1.42940 1.50643 1.62497 1.73673 2.28842 2.47237 2.90939 3.18492 3.46414 3.53471 3.72922 3.75959 3.80959 3.91663 4.04302 4.16332 4.40170 4.45257 4.46439 4.49405 4.56973 4.66692 4.68838 4.70046 4.72169 4.79905 4.82610 4.85679 4.87312 4.95295 5.03173 5.05661 5.08812 5.09664 5.17290 5.19300 5.24897 5.29140 5.33661 5.33954 5.43083 5.56090 5.65385 5.65802 6.10963 6.20078 6.33314 6.41171 6.62878 6.83345 7.22027 7.29821 7.47360 8.94369 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014856 B = 0.002848 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.252389 B = 9830.050862 C =11026.060007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.124 3.876 3 C -0.131 4.131 4 C -0.177 4.177 5 O -0.362 6.362 6 C 0.664 3.336 7 O -0.592 6.592 8 N -0.591 5.591 9 C 0.095 3.905 10 C -0.112 4.112 11 C -0.116 4.116 12 C 0.136 3.864 13 H 0.112 0.888 14 C 0.496 3.504 15 O -0.586 6.586 16 N -0.705 5.705 17 C 0.153 3.847 18 C 0.054 3.946 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.534 4.534 22 H 0.040 0.960 23 C 0.031 3.969 24 N -0.897 5.897 25 Si 0.943 3.057 26 H -0.280 1.280 27 H -0.279 1.279 28 H -0.277 1.277 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.117 0.883 42 H 0.074 0.926 43 H 0.129 0.871 44 H 0.410 0.590 45 H 0.038 0.962 46 H 0.023 0.977 47 H 0.037 0.963 48 H 0.064 0.936 49 H 0.010 0.990 50 H 0.020 0.980 51 H 0.063 0.937 52 H 0.041 0.959 53 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.117 15.443 -0.549 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.088 3.912 3 C -0.188 4.188 4 C -0.234 4.234 5 O -0.277 6.277 6 C 0.420 3.580 7 O -0.483 6.483 8 N -0.331 5.331 9 C -0.026 4.026 10 C -0.150 4.150 11 C -0.154 4.154 12 C 0.030 3.970 13 H 0.129 0.871 14 C 0.282 3.718 15 O -0.466 6.466 16 N -0.357 5.357 17 C 0.029 3.971 18 C 0.053 3.947 19 C -0.176 4.176 20 C -0.176 4.176 21 C -0.573 4.573 22 H 0.058 0.942 23 C -0.169 4.169 24 N -0.535 5.535 25 Si 0.770 3.230 26 H -0.206 1.206 27 H -0.204 1.204 28 H -0.202 1.202 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.120 0.880 41 H 0.135 0.865 42 H 0.093 0.907 43 H 0.147 0.853 44 H 0.247 0.753 45 H 0.057 0.943 46 H 0.042 0.958 47 H 0.056 0.944 48 H 0.082 0.918 49 H 0.029 0.971 50 H 0.039 0.961 51 H 0.082 0.918 52 H 0.060 0.940 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 20.354 15.888 -0.800 25.833 hybrid contribution -1.855 -0.574 -0.303 1.966 sum 18.499 15.314 -1.103 24.040 Atomic orbital electron populations 1.22462 0.95247 1.02896 1.03166 1.22444 0.93710 0.93263 0.81753 1.21860 1.02769 0.89869 1.04260 1.22450 1.01964 1.01866 0.97110 1.86270 1.71467 1.22428 1.47525 1.17682 0.78010 0.80916 0.81425 1.90922 1.41671 1.71114 1.44559 1.46964 1.52796 1.11680 1.21686 1.22649 0.93109 0.98576 0.88259 1.22870 0.96842 0.91393 1.03894 1.22805 0.97543 1.02900 0.92129 1.21707 0.90167 0.82609 1.02542 0.87053 1.21542 0.91755 0.82777 0.75721 1.90639 1.64988 1.40319 1.50615 1.46046 1.08999 1.09061 1.71594 1.21194 0.79156 0.98611 0.98173 1.18334 0.94475 0.88376 0.93494 1.21652 0.96772 1.02420 0.96733 1.21664 0.96712 1.02450 0.96791 1.21252 0.92930 0.94158 1.48915 0.94157 1.25425 1.01302 0.95538 0.94633 1.69913 1.35417 0.98815 1.49337 0.85803 0.81806 0.77227 0.78150 1.20644 1.20436 1.20167 0.92844 0.88801 0.93371 0.90310 0.87853 0.91504 0.92673 0.89044 0.91018 0.88336 0.91971 0.87991 0.86453 0.90721 0.85317 0.75295 0.94331 0.95819 0.94435 0.91758 0.97054 0.96110 0.91773 0.93968 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.87 8.37 71.98 0.60 -4.26 16 2 C 0.12 2.89 1.13 -10.79 -0.01 2.88 16 3 C -0.13 -1.89 8.85 71.98 0.64 -1.25 16 4 C -0.18 -3.85 8.37 71.98 0.60 -3.25 16 5 O -0.36 -10.16 9.42 -55.45 -0.52 -10.69 16 6 C 0.66 21.99 7.32 129.79 0.95 22.94 16 7 O -0.59 -23.64 11.69 19.77 0.23 -23.41 16 8 N -0.59 -16.24 2.75 -922.39 -2.54 -18.78 16 9 C 0.10 1.71 6.93 86.86 0.60 2.31 16 10 C -0.11 -1.17 7.09 32.07 0.23 -0.94 16 11 C -0.12 -1.82 6.49 31.87 0.21 -1.62 16 12 C 0.14 3.53 3.25 44.59 0.14 3.68 16 13 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 14 C 0.50 18.33 6.28 87.66 0.55 18.88 16 15 O -0.59 -27.26 16.12 -3.02 -0.05 -27.31 16 16 N -0.71 -25.97 4.90 -463.07 -2.27 -28.24 16 17 C 0.15 6.97 4.50 86.38 0.39 7.36 16 18 C 0.05 2.58 0.50 -52.93 -0.03 2.55 16 19 C -0.12 -5.50 8.03 71.98 0.58 -4.93 16 20 C -0.12 -5.24 8.11 71.98 0.58 -4.66 16 21 C -0.53 -29.31 8.01 25.60 0.20 -29.10 16 22 H 0.04 2.28 7.75 -2.91 -0.02 2.26 16 23 C 0.03 1.68 5.13 84.66 0.43 2.12 16 24 N -0.90 -48.42 9.45 21.45 0.20 -48.21 16 25 Si 0.94 43.63 29.54 68.60 2.03 45.66 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 28 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 1.73 5.88 -2.39 -0.01 1.72 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 1.61 5.88 -2.39 -0.01 1.60 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 38 H 0.10 1.44 8.04 -2.39 -0.02 1.42 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 1.39 7.84 -2.39 -0.02 1.37 16 43 H 0.13 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.41 12.74 6.16 -92.71 -0.57 12.17 16 45 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.04 1.47 6.71 -2.39 -0.02 1.45 16 48 H 0.06 3.23 6.25 -2.38 -0.01 3.22 16 49 H 0.01 0.51 8.14 -2.39 -0.02 0.50 16 50 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 51 H 0.06 3.15 6.10 -2.39 -0.01 3.14 16 52 H 0.04 1.52 6.86 -2.39 -0.02 1.50 16 53 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 Total: -1.00 -75.84 409.62 4.07 -71.77 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.32 Total: 26.48 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 6.67 Total: 12.71 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -4.61 Total: -95.23 kcal Atomic # 8 Polarization: -61.06 SS G_CDS: -0.34 Total: -61.40 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -75.84 4.07 -71.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495878546.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.565 kcal (2) G-P(sol) polarization free energy of solvation -75.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds