Wall clock time and date at job start Sat Apr 11 2020 06:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.47170 * 135.99662 * 359.62527 * 8 6 5 10 10 C 1.53200 * 87.75287 * 153.41267 * 9 8 6 11 11 C 1.47160 * 136.00437 * 179.97438 * 8 6 5 12 12 C 1.52597 * 114.30962 * 272.26342 * 10 9 8 13 13 N 1.47201 * 109.00651 * 174.49351 * 12 10 9 14 14 C 1.46907 * 110.99977 * 179.78389 * 13 12 10 15 15 C 1.53001 * 109.46647 * 170.00610 * 14 13 12 16 16 C 1.52999 * 109.46746 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47220 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99924 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99786 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00456 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99830 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46937 * 59.99979 * 21 19 17 23 23 H 1.48497 * 109.47336 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47226 * 300.00790 * 21 19 17 25 25 C 1.46991 * 110.66389 * 56.07370 * 13 12 10 26 26 C 1.53071 * 109.55618 * 299.57534 * 25 13 12 27 27 O 1.42453 * 114.12300 * 139.66584 * 10 9 8 28 28 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 31 31 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 32 32 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 34 34 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 35 35 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 37 37 H 1.08994 * 113.48853 * 268.10498 * 9 8 6 38 38 H 1.08994 * 113.48665 * 38.62097 * 9 8 6 39 39 H 1.08998 * 113.48924 * 321.38236 * 11 8 6 40 40 H 1.09005 * 113.49175 * 91.82578 * 11 8 6 41 41 H 1.09002 * 109.54942 * 294.36031 * 12 10 9 42 42 H 1.09007 * 109.54755 * 54.54400 * 12 10 9 43 43 H 1.09000 * 109.46883 * 290.00506 * 14 13 12 44 44 H 1.08994 * 109.46588 * 50.00627 * 14 13 12 45 45 H 1.09000 * 109.47395 * 299.99583 * 15 14 13 46 46 H 1.09000 * 109.47209 * 60.00429 * 15 14 13 47 47 H 1.08998 * 109.47190 * 299.99817 * 16 15 14 48 48 H 1.08997 * 109.47409 * 59.99744 * 16 15 14 49 49 H 0.97001 * 119.99966 * 180.02562 * 20 19 17 50 50 H 1.08999 * 109.46177 * 59.60895 * 25 13 12 51 51 H 1.09004 * 109.45270 * 179.55413 * 25 13 12 52 52 H 1.08999 * 109.51015 * 178.68445 * 26 25 13 53 53 H 1.08996 * 109.51394 * 298.84044 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 2.8994 -1.9229 -3.8665 10 6 2.1156 -2.0124 -5.1798 11 6 1.8950 -0.5156 -4.9578 12 6 0.8415 -2.8480 -5.0952 13 7 0.1168 -2.7477 -6.3725 14 6 -1.1184 -3.5424 -6.3408 15 6 -1.9632 -3.2210 -7.5752 16 6 -3.2499 -4.0481 -7.5419 17 6 -4.0825 -3.7312 -8.7574 18 1 -3.7290 -3.0121 -9.4815 19 6 -5.2949 -4.3601 -8.9456 20 7 -5.7252 -5.2362 -8.0641 21 14 -6.3266 -3.9679 -10.4527 22 1 -5.5570 -4.2981 -11.6790 23 1 -7.5755 -4.7706 -10.4203 24 1 -6.6676 -2.5225 -10.4566 25 6 0.9780 -3.1572 -7.4911 26 6 2.2038 -2.2426 -7.5555 27 8 2.9169 -2.3225 -6.3160 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 -1.7490 1.2492 35 1 3.1301 -0.7209 1.2493 36 1 1.6767 -0.2075 2.1392 37 1 3.9525 -1.6782 -4.0050 38 1 2.7475 -2.7787 -3.2089 39 1 0.8928 -0.1800 -5.2243 40 1 2.6774 0.1086 -5.3897 41 1 1.1003 -3.8893 -4.9033 42 1 0.2128 -2.4736 -4.2872 43 1 -0.8679 -4.6032 -6.3380 44 1 -1.6832 -3.3000 -5.4407 45 1 -2.2137 -2.1602 -7.5780 46 1 -1.3983 -3.4634 -8.4753 47 1 -2.9999 -5.1091 -7.5389 48 1 -3.8147 -3.8055 -6.6418 49 1 -6.5780 -5.6789 -8.1968 50 1 1.3011 -4.1875 -7.3423 51 1 0.4203 -3.0830 -8.4247 52 1 2.8534 -2.5615 -8.3706 53 1 1.8828 -1.2150 -7.7254 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495907490.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:31 Heat of formation + Delta-G solvation = -103.000263 kcal Electronic energy + Delta-G solvation = -30833.278957 eV Core-core repulsion = 26705.850271 eV Total energy + Delta-G solvation = -4127.428685 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.38522 -41.31258 -39.10877 -37.74271 -37.15399 -35.52185 -35.06273 -33.28307 -31.85182 -29.74221 -28.60858 -28.38475 -28.30837 -27.34518 -26.38083 -24.72640 -23.67516 -22.71308 -21.54792 -20.74149 -19.95034 -19.00769 -18.51207 -17.99257 -17.77901 -17.30836 -16.91602 -16.52714 -16.47804 -16.29907 -15.91447 -15.60453 -15.43006 -15.24638 -14.90019 -14.79527 -14.55245 -14.23385 -14.13205 -13.75821 -13.51467 -13.35620 -13.24610 -13.09429 -13.08633 -12.91939 -12.88496 -12.79823 -12.65374 -12.51172 -12.47263 -12.34505 -12.23645 -11.98412 -11.61934 -11.43035 -11.40260 -11.35427 -11.19257 -11.09047 -10.76356 -10.55122 -9.96862 -9.41287 -8.20713 -6.31776 0.80685 1.39561 1.42777 1.50606 1.65278 2.39893 2.44461 2.61947 2.81879 3.12487 3.27888 3.45221 3.72821 3.77908 3.80748 3.92749 3.97987 4.04547 4.11156 4.25387 4.28342 4.40431 4.42429 4.48513 4.52598 4.55856 4.59604 4.60383 4.65083 4.68344 4.68828 4.74921 4.79803 4.83221 4.84698 4.86952 4.96245 5.01465 5.05414 5.12042 5.23778 5.26400 5.31319 5.42956 5.50444 5.71881 5.84492 5.90246 5.97275 6.07097 6.25156 6.49745 6.84975 7.15002 7.37491 8.91049 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012698 B = 0.002301 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.596635 B =12166.711208 C =13621.042851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.124 3.876 3 C -0.178 4.178 4 C -0.134 4.134 5 O -0.363 6.363 6 C 0.680 3.320 7 O -0.592 6.592 8 N -0.636 5.636 9 C 0.130 3.870 10 C 0.091 3.909 11 C 0.112 3.888 12 C 0.056 3.944 13 N -0.541 5.541 14 C 0.069 3.931 15 C -0.087 4.087 16 C 0.026 3.974 17 C -0.542 4.542 18 H 0.061 0.939 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.265 1.265 23 H -0.283 1.283 24 H -0.268 1.268 25 C 0.010 3.990 26 C 0.067 3.933 27 O -0.358 6.358 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.030 0.970 44 H 0.062 0.938 45 H 0.050 0.950 46 H 0.057 0.943 47 H -0.009 1.009 48 H -0.012 1.012 49 H 0.263 0.737 50 H 0.042 0.958 51 H 0.090 0.910 52 H 0.129 0.871 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.807 8.649 14.464 29.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.088 3.912 3 C -0.235 4.235 4 C -0.191 4.191 5 O -0.278 6.278 6 C 0.437 3.563 7 O -0.483 6.483 8 N -0.380 5.380 9 C 0.008 3.992 10 C 0.049 3.951 11 C -0.009 4.009 12 C -0.073 4.073 13 N -0.265 5.265 14 C -0.058 4.058 15 C -0.125 4.125 16 C -0.012 4.012 17 C -0.580 4.580 18 H 0.079 0.921 19 C -0.200 4.200 20 N -0.575 5.575 21 Si 0.789 3.211 22 H -0.189 1.189 23 H -0.209 1.209 24 H -0.193 1.193 25 C -0.118 4.118 26 C -0.009 4.009 27 O -0.275 6.275 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.140 0.860 38 H 0.119 0.881 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.049 0.951 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.010 0.990 48 H 0.006 0.994 49 H 0.072 0.928 50 H 0.061 0.939 51 H 0.109 0.891 52 H 0.147 0.853 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.445 9.388 14.724 29.234 hybrid contribution -1.305 -0.735 -0.587 1.608 sum 22.141 8.653 14.137 27.658 Atomic orbital electron populations 1.22498 0.94398 1.02811 1.04237 1.22476 0.94322 0.92907 0.81519 1.22461 1.01784 0.95026 1.04258 1.21878 1.02591 1.01121 0.93488 1.86313 1.71328 1.56738 1.13409 1.17289 0.78423 0.80214 0.80386 1.90916 1.42699 1.27831 1.86830 1.47816 1.53486 1.32778 1.03890 1.23141 0.96752 0.88064 0.91289 1.22425 0.91347 0.93257 0.88064 1.23602 1.03711 0.97831 0.75784 1.22216 0.93593 0.98882 0.92569 1.62276 1.05366 1.55676 1.03222 1.22012 0.90128 0.94494 0.99183 1.21372 0.95262 0.99513 0.96329 1.18965 0.92713 0.94189 0.95328 1.21654 1.04328 1.23881 1.08128 0.92125 1.25999 0.99230 0.94852 0.99883 1.70092 1.21430 1.28514 1.37425 0.85503 0.77713 0.78477 0.79381 1.18929 1.20877 1.19303 1.22920 0.95071 0.98202 0.95613 1.22892 0.92489 0.99555 0.85961 1.87950 1.35510 1.89968 1.14121 0.92415 0.92260 0.88860 0.88910 0.91562 0.92325 0.91372 0.90811 0.87828 0.86017 0.88073 0.90753 0.87112 0.92799 0.90531 0.95149 0.91932 0.93096 0.92474 0.99036 0.99351 0.92783 0.93948 0.89135 0.85318 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.62 8.37 71.98 0.60 -3.02 16 2 C 0.12 2.28 1.13 -10.79 -0.01 2.26 16 3 C -0.18 -3.11 8.37 71.98 0.60 -2.51 16 4 C -0.13 -1.52 8.85 71.98 0.64 -0.89 16 5 O -0.36 -8.37 9.91 -55.38 -0.55 -8.92 16 6 C 0.68 18.25 8.26 129.79 1.07 19.32 16 7 O -0.59 -19.17 12.66 19.80 0.25 -18.92 16 8 N -0.64 -14.32 3.47 -989.23 -3.43 -17.75 16 9 C 0.13 2.11 8.09 83.40 0.67 2.79 16 10 C 0.09 1.77 1.35 -10.88 -0.01 1.76 16 11 C 0.11 2.36 7.79 83.31 0.65 3.01 16 12 C 0.06 1.33 4.78 86.11 0.41 1.75 16 13 N -0.54 -15.11 4.74 -895.81 -4.25 -19.35 16 14 C 0.07 2.38 4.96 86.30 0.43 2.81 16 15 C -0.09 -3.58 5.09 30.59 0.16 -3.42 16 16 C 0.03 1.37 4.97 29.85 0.15 1.52 16 17 C -0.54 -31.16 9.11 25.60 0.23 -30.92 16 18 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 19 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 20 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 21 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 22 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 C 0.01 0.23 5.41 86.31 0.47 0.70 16 26 C 0.07 1.19 6.95 72.01 0.50 1.69 16 27 O -0.36 -6.75 10.60 -148.98 -1.58 -8.33 16 28 H 0.06 1.54 5.88 -2.39 -0.01 1.52 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.40 5.88 -2.39 -0.01 1.39 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.10 1.45 8.12 -2.39 -0.02 1.43 16 39 H 0.07 1.89 8.11 -2.39 -0.02 1.87 16 40 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 41 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.08 2.03 7.92 -2.38 -0.02 2.01 16 43 H 0.03 1.05 8.12 -2.39 -0.02 1.03 16 44 H 0.06 2.24 8.07 -2.39 -0.02 2.22 16 45 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.06 2.23 6.48 -2.39 -0.02 2.22 16 47 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 48 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 49 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 50 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.09 2.26 6.31 -2.38 -0.02 2.24 16 52 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 53 H 0.07 1.18 8.05 -2.39 -0.02 1.16 16 Total: -1.00 -71.79 415.59 0.64 -71.15 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.86 Total: 15.56 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 7.02 Total: -2.82 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -7.39 Total: -94.34 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -1.88 Total: -36.17 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -71.79 0.64 -71.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495907490.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.850 kcal (2) G-P(sol) polarization free energy of solvation -71.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds