Wall clock time and date at job start Sat Apr 11 2020 06:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47424 * 2 1 4 4 C 1.52998 * 109.47589 * 239.99495 * 2 1 3 5 5 O 1.45208 * 109.46779 * 119.99589 * 2 1 3 6 6 C 1.34636 * 116.99983 * 60.00283 * 5 2 1 7 7 O 1.21514 * 120.00109 * 359.97438 * 6 5 2 8 8 N 1.34778 * 120.00135 * 179.97438 * 6 5 2 9 9 C 1.46919 * 120.63255 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 126.34238 * 9 8 6 11 11 C 1.53346 * 109.14901 * 54.57640 * 10 9 8 12 12 C 1.53004 * 109.41904 * 178.67276 * 11 10 9 13 13 N 1.46500 * 109.47150 * 295.13157 * 12 11 10 14 14 C 1.34778 * 119.99850 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00118 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00026 * 179.97438 * 14 13 12 17 17 C 1.52991 * 109.47333 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.47561 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99308 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00208 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99906 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99787 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47133 * 60.00384 * 22 20 18 24 24 H 1.48503 * 109.46942 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47234 * 300.00275 * 22 20 18 26 26 C 1.53034 * 109.61010 * 298.71225 * 11 10 9 27 27 C 1.46933 * 120.62741 * 0.02562 * 8 6 5 28 28 H 1.08997 * 109.47283 * 300.00457 * 1 2 3 29 29 H 1.08999 * 109.46530 * 60.00281 * 1 2 3 30 30 H 1.09002 * 109.47087 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47427 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46544 * 299.99998 * 3 2 1 33 33 H 1.09005 * 109.46960 * 59.99503 * 3 2 1 34 34 H 1.09002 * 109.47165 * 300.00269 * 4 2 1 35 35 H 1.08999 * 109.46767 * 59.99764 * 4 2 1 36 36 H 1.08997 * 109.47507 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.58751 * 246.20189 * 9 8 6 38 38 H 1.08996 * 109.58750 * 6.48373 * 9 8 6 39 39 H 1.08997 * 109.49914 * 174.65962 * 10 9 8 40 40 H 1.09002 * 109.49585 * 294.75599 * 10 9 8 41 41 H 1.09001 * 109.42242 * 58.75065 * 11 10 9 42 42 H 1.09001 * 109.46592 * 55.13132 * 12 11 10 43 43 H 1.08997 * 109.47133 * 175.12697 * 12 11 10 44 44 H 0.96999 * 119.99704 * 359.97438 * 13 12 11 45 45 H 1.09001 * 109.47320 * 300.00978 * 16 14 13 46 46 H 1.09007 * 109.47136 * 60.00244 * 16 14 13 47 47 H 1.09002 * 109.47210 * 300.00139 * 17 16 14 48 48 H 1.09006 * 109.47506 * 60.00143 * 17 16 14 49 49 H 0.97004 * 119.99330 * 179.97438 * 21 20 18 50 50 H 1.08994 * 109.50232 * 301.42239 * 26 11 10 51 51 H 1.09007 * 109.52628 * 181.33900 * 26 11 10 52 52 H 1.08994 * 109.58580 * 353.38021 * 27 8 6 53 53 H 1.09006 * 109.57831 * 113.65514 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1857 6 6 1.6522 -1.9723 1.3385 7 8 0.9509 -2.5095 0.5042 8 7 2.0679 -2.6656 2.4169 9 6 1.6810 -4.0714 2.5978 10 6 2.9450 -4.9103 2.8107 11 6 3.7491 -4.3216 3.9762 12 6 4.9966 -5.1745 4.2156 13 7 4.5958 -6.5136 4.6543 14 6 5.5337 -7.4427 4.9258 15 8 6.7095 -7.1700 4.8074 16 6 5.1215 -8.8199 5.3776 17 6 6.3688 -9.6728 5.6169 18 6 5.9566 -11.0504 6.0681 19 1 4.9094 -11.2933 6.1732 20 6 6.9160 -12.0008 6.3458 21 7 8.1911 -11.7050 6.2173 22 14 6.4049 -13.7085 6.9043 23 1 5.5656 -14.3418 5.8557 24 1 7.6157 -14.5363 7.1368 25 1 5.6273 -13.6048 8.1651 26 6 4.1681 -2.8889 3.6391 27 6 2.9158 -2.0296 3.4345 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6768 -1.7490 -1.2491 35 1 1.6768 -0.2076 -2.1391 36 1 3.1301 -0.7209 -1.2493 37 1 1.0311 -4.1624 3.4682 38 1 1.1545 -4.4226 1.7104 39 1 2.6650 -5.9384 3.0401 40 1 3.5511 -4.8913 1.9049 41 1 3.1337 -4.3178 4.8758 42 1 5.5675 -5.2510 3.2902 43 1 5.6126 -4.7093 4.9851 44 1 3.6554 -6.7316 4.7493 45 1 4.5510 -8.7431 6.3032 46 1 4.5048 -9.2852 4.6085 47 1 6.9395 -9.7497 4.6914 48 1 6.9851 -9.2075 6.3862 49 1 8.8661 -12.3737 6.4130 50 1 4.7628 -2.8890 2.7257 51 1 4.7597 -2.4800 4.4584 52 1 3.2062 -1.0344 3.0981 53 1 2.3654 -1.9523 4.3722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496003854.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:39 Heat of formation + Delta-G solvation = -166.897348 kcal Electronic energy + Delta-G solvation = -29840.844735 eV Core-core repulsion = 25710.645264 eV Total energy + Delta-G solvation = -4130.199471 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.94799 -40.77873 -39.68339 -37.83291 -36.24710 -35.52815 -35.00855 -33.61906 -32.79861 -32.09700 -28.95168 -28.36013 -28.28428 -27.31242 -24.98748 -24.46193 -23.29776 -22.61598 -21.41266 -21.03209 -20.17386 -19.00406 -18.71696 -17.70138 -17.39094 -17.28447 -16.94412 -16.64898 -16.39389 -16.24626 -15.60586 -15.51813 -15.40798 -14.87031 -14.86775 -14.62143 -14.35510 -14.26825 -14.10758 -14.01854 -13.57009 -13.28668 -13.21204 -13.12920 -13.03748 -12.87139 -12.85217 -12.75396 -12.50780 -12.47461 -12.31666 -12.19410 -11.97458 -11.88535 -11.66026 -11.61268 -11.46475 -11.37976 -11.30679 -11.03535 -10.68756 -10.54866 -10.01691 -9.77406 -8.16597 -6.30768 1.14489 1.43073 1.47556 1.55252 1.75261 1.76157 2.30089 2.46977 2.83769 3.16309 3.63510 3.70258 3.76070 3.80798 3.81678 3.95874 4.05875 4.12404 4.26440 4.32887 4.47026 4.52601 4.53249 4.56894 4.61105 4.61948 4.69214 4.71920 4.77131 4.82209 4.84016 4.85466 4.88151 4.88867 4.96340 5.05534 5.12089 5.13347 5.16074 5.28306 5.33051 5.38539 5.47044 5.49749 5.54083 5.57554 5.65392 5.87192 6.19162 6.31051 6.66498 6.87898 7.27502 7.38859 7.41048 8.95773 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.030899 B = 0.001598 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.953630 B =17517.075173 C =17837.390593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.125 3.875 3 C -0.135 4.135 4 C -0.180 4.180 5 O -0.365 6.365 6 C 0.645 3.355 7 O -0.597 6.597 8 N -0.595 5.595 9 C 0.129 3.871 10 C -0.127 4.127 11 C -0.085 4.085 12 C 0.125 3.875 13 N -0.716 5.716 14 C 0.509 3.491 15 O -0.593 6.593 16 C -0.120 4.120 17 C 0.041 3.959 18 C -0.544 4.544 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.938 5.938 22 Si 0.974 3.026 23 H -0.263 1.263 24 H -0.288 1.288 25 H -0.262 1.262 26 C -0.124 4.124 27 C 0.115 3.885 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.105 0.895 42 H 0.045 0.955 43 H 0.059 0.941 44 H 0.416 0.584 45 H 0.106 0.894 46 H 0.104 0.896 47 H -0.020 1.020 48 H -0.018 1.018 49 H 0.262 0.738 50 H 0.057 0.943 51 H 0.097 0.903 52 H 0.094 0.906 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.816 29.236 -9.805 36.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.089 3.911 3 C -0.192 4.192 4 C -0.237 4.237 5 O -0.280 6.280 6 C 0.401 3.599 7 O -0.489 6.489 8 N -0.335 5.335 9 C 0.008 3.992 10 C -0.165 4.165 11 C -0.104 4.104 12 C 0.001 3.999 13 N -0.370 5.370 14 C 0.298 3.702 15 O -0.473 6.473 16 C -0.160 4.160 17 C 0.003 3.997 18 C -0.582 4.582 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.578 5.578 22 Si 0.798 3.202 23 H -0.188 1.188 24 H -0.214 1.214 25 H -0.186 1.186 26 C -0.163 4.163 27 C -0.007 4.007 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.123 0.877 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.254 0.746 45 H 0.124 0.876 46 H 0.122 0.878 47 H -0.001 1.001 48 H 0.000 1.000 49 H 0.071 0.929 50 H 0.076 0.924 51 H 0.116 0.884 52 H 0.113 0.887 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.045 29.302 -10.182 36.401 hybrid contribution 0.201 -1.178 0.019 1.195 sum -18.845 28.124 -10.163 35.347 Atomic orbital electron populations 1.22454 0.93904 1.03590 1.03559 1.22380 0.94608 0.92667 0.81476 1.21874 1.02343 0.90673 1.04343 1.22468 1.01432 1.02178 0.97635 1.86296 1.71487 1.23112 1.47108 1.18227 0.78741 0.80972 0.82005 1.90882 1.42833 1.71012 1.44156 1.47171 1.52653 1.12434 1.21265 1.21697 0.96785 0.77266 1.03485 1.22048 0.96141 1.00007 0.98323 1.21380 0.95018 0.94271 0.99711 1.21375 0.97459 0.82049 0.99026 1.45887 1.10030 1.12103 1.68939 1.21320 0.85436 0.87789 0.75674 1.90658 1.20643 1.81872 1.54127 1.21632 1.00469 0.90457 1.03397 1.18696 0.92650 0.93807 0.94558 1.21710 0.93860 0.97303 1.45347 0.90517 1.26143 0.94768 1.03939 0.95610 1.70181 1.01310 1.36239 1.50045 0.85370 0.77552 0.77954 0.79330 1.18758 1.21419 1.18630 1.21887 0.97509 0.93896 1.02961 1.21865 0.90543 0.96681 0.91573 0.91795 0.89330 0.92046 0.91372 0.88193 0.90967 0.92137 0.89265 0.92310 0.88598 0.90081 0.88881 0.92932 0.87714 0.93642 0.92272 0.74585 0.87601 0.87803 1.00137 0.99961 0.92917 0.92373 0.88437 0.88742 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 8.37 71.98 0.60 -1.90 16 2 C 0.12 1.80 1.13 -10.79 -0.01 1.79 16 3 C -0.14 -1.13 8.85 71.98 0.64 -0.49 16 4 C -0.18 -2.78 8.37 71.98 0.60 -2.17 16 5 O -0.37 -6.57 8.53 -55.46 -0.47 -7.04 16 6 C 0.65 13.35 7.74 129.79 1.00 14.35 16 7 O -0.60 -15.38 11.29 19.80 0.22 -15.15 16 8 N -0.59 -9.37 2.97 -949.14 -2.82 -12.19 16 9 C 0.13 1.76 6.42 86.36 0.55 2.32 16 10 C -0.13 -1.73 5.27 30.78 0.16 -1.57 16 11 C -0.09 -1.08 2.19 -10.66 -0.02 -1.11 16 12 C 0.12 2.68 5.07 86.38 0.44 3.11 16 13 N -0.72 -17.51 5.27 -463.06 -2.44 -19.95 16 14 C 0.51 19.19 7.83 87.66 0.69 19.88 16 15 O -0.59 -29.08 15.98 -3.03 -0.05 -29.13 16 16 C -0.12 -4.71 5.64 29.84 0.17 -4.54 16 17 C 0.04 2.26 4.26 29.85 0.13 2.39 16 18 C -0.54 -30.98 9.11 25.60 0.23 -30.75 16 19 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 20 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 21 N -0.94 -59.78 13.29 21.45 0.28 -59.49 16 22 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 24 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 26 C -0.12 -1.42 5.37 30.69 0.16 -1.25 16 27 C 0.12 1.23 6.45 86.38 0.56 1.79 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 1.22 5.88 -2.39 -0.01 1.21 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 32 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.06 1.29 5.88 -2.39 -0.01 1.28 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 1.41 7.00 -2.39 -0.02 1.40 16 39 H 0.09 1.09 7.16 -2.39 -0.02 1.08 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.42 6.91 7.65 -92.71 -0.71 6.20 16 45 H 0.11 3.59 8.14 -2.39 -0.02 3.58 16 46 H 0.10 3.56 8.14 -2.38 -0.02 3.55 16 47 H -0.02 -1.26 8.10 -2.39 -0.02 -1.28 16 48 H -0.02 -1.14 8.10 -2.38 -0.02 -1.16 16 49 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 50 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 52 H 0.09 1.02 6.93 -2.39 -0.02 1.00 16 53 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -83.17 416.88 3.29 -79.88 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.17 Total: 14.88 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 6.36 Total: 1.89 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -4.98 Total: -91.63 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -0.30 Total: -51.33 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -83.17 3.29 -79.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496003854.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.013 kcal (2) G-P(sol) polarization free energy of solvation -83.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds