Wall clock time and date at job start Sat Apr 11 2020 06:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.37092 * 119.99321 * 2 1 4 4 H 1.08001 * 119.99703 * 202.67061 * 3 2 1 5 5 C 1.38950 * 120.00366 * 22.67970 * 3 2 1 6 6 N 1.31409 * 120.00208 * 11.44555 * 5 3 2 7 7 Si 1.86803 * 119.99742 * 191.45388 * 5 3 2 8 8 H 1.48496 * 109.47384 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47340 * 119.99650 * 7 5 3 10 10 H 1.48500 * 109.47065 * 239.99219 * 7 5 3 11 11 C 1.34768 * 120.00158 * 180.27084 * 2 1 3 12 12 O 1.21292 * 120.00217 * 179.72969 * 11 2 1 13 13 C 1.50705 * 120.00178 * 359.73079 * 11 2 1 14 14 C 1.52999 * 109.47184 * 179.97438 * 13 11 2 15 15 H 1.08998 * 109.46758 * 304.99528 * 14 13 11 16 16 C 1.53001 * 109.47242 * 64.99921 * 14 13 11 17 17 C 1.52999 * 109.47242 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.47015 * 299.99982 * 17 16 14 19 19 C 1.53001 * 109.47101 * 59.99932 * 18 17 16 20 20 C 1.52999 * 109.47242 * 299.99929 * 19 18 17 21 21 H 1.08996 * 109.47352 * 179.97438 * 20 19 18 22 22 N 1.46504 * 109.47311 * 300.00339 * 20 19 18 23 23 C 1.34774 * 119.99779 * 275.00199 * 22 20 19 24 24 O 1.21519 * 120.00084 * 359.97438 * 23 22 20 25 25 O 1.34631 * 120.00114 * 179.97438 * 23 22 20 26 26 C 1.45201 * 117.00262 * 179.97438 * 25 23 22 27 27 C 1.52998 * 109.47101 * 59.99576 * 26 25 23 28 28 C 1.53000 * 109.47444 * 179.97438 * 26 25 23 29 29 C 1.53002 * 109.46795 * 299.99847 * 26 25 23 30 30 H 1.08996 * 109.47059 * 271.94950 * 1 2 3 31 31 H 1.08994 * 109.46939 * 31.95864 * 1 2 3 32 32 H 1.09004 * 109.46612 * 151.95158 * 1 2 3 33 33 H 0.97004 * 120.00062 * 180.02562 * 6 5 3 34 34 H 1.09004 * 109.47028 * 299.99685 * 13 11 2 35 35 H 1.09002 * 109.47026 * 59.99337 * 13 11 2 36 36 H 1.08999 * 109.46794 * 299.99937 * 16 14 13 37 37 H 1.09000 * 109.47422 * 59.99575 * 16 14 13 38 38 H 1.08998 * 109.46758 * 59.99608 * 17 16 14 39 39 H 1.08996 * 109.47352 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.46877 * 179.97438 * 18 17 16 41 41 H 1.09000 * 109.46693 * 299.99840 * 18 17 16 42 42 H 1.09005 * 109.47204 * 59.99647 * 19 18 17 43 43 H 1.08999 * 109.46794 * 179.97438 * 19 18 17 44 44 H 0.97001 * 119.99892 * 94.99278 * 22 20 19 45 45 H 1.08998 * 109.47101 * 60.00367 * 27 26 25 46 46 H 1.09001 * 109.47269 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.47166 * 299.99992 * 27 26 25 48 48 H 1.09003 * 109.47209 * 59.99371 * 28 26 25 49 49 H 1.09001 * 109.47199 * 180.02562 * 28 26 25 50 50 H 1.09002 * 109.46582 * 300.00111 * 28 26 25 51 51 H 1.08993 * 109.47207 * 59.99860 * 29 26 25 52 52 H 1.08999 * 109.47214 * 180.02562 * 29 26 25 53 53 H 1.09002 * 109.47024 * 299.99485 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1678 1.2235 -0.3605 5 6 1.5362 2.3441 0.4640 6 7 0.3926 2.2683 1.1068 7 14 2.3361 4.0071 0.1737 8 1 3.6090 3.8214 -0.5681 9 1 1.4204 4.8649 -0.6206 10 1 2.6148 4.6570 1.4795 11 6 2.1390 -1.1671 -0.0055 12 8 3.3519 -1.1671 -0.0105 13 6 1.3855 -2.4723 -0.0056 14 6 2.3798 -3.6351 -0.0130 15 1 3.0601 -3.5260 -0.8576 16 6 3.1804 -3.6300 1.2908 17 6 4.1743 -4.7932 1.2836 18 6 3.4124 -6.1142 1.1582 19 6 2.6118 -6.1193 -0.1456 20 6 1.6179 -4.9561 -0.1385 21 1 1.0479 -4.9595 -1.0674 22 7 0.7035 -5.1020 0.9968 23 6 -0.3966 -5.8720 0.8812 24 8 -0.6303 -6.4447 -0.1648 25 8 -1.2368 -6.0065 1.9246 26 6 -2.4017 -6.8507 1.7283 27 6 -1.9500 -8.2700 1.3785 28 6 -3.2312 -6.8823 3.0136 29 6 -3.2513 -6.2899 0.5861 30 1 -0.3633 0.0350 1.0270 31 1 -0.3633 0.8719 -0.5439 32 1 -0.3633 -0.9070 -0.4833 33 1 -0.0364 3.0760 1.4304 34 1 0.7625 -2.5322 0.8869 35 1 0.7552 -2.5279 -0.8931 36 1 3.7228 -2.6888 1.3803 37 1 2.5001 -3.7390 2.1354 38 1 4.8546 -4.6846 0.4390 39 1 4.7443 -4.7898 2.2126 40 1 4.1205 -6.9428 1.1526 41 1 2.7321 -6.2227 2.0028 42 1 3.2922 -6.0106 -0.9903 43 1 2.0694 -7.0605 -0.2352 44 1 0.8899 -4.6446 1.8316 45 1 -1.3447 -8.6696 2.1922 46 1 -2.8245 -8.9037 1.2307 47 1 -1.3589 -8.2479 0.4629 48 1 -3.5530 -5.8712 3.2633 49 1 -4.1055 -7.5164 2.8664 50 1 -2.6256 -7.2820 3.8270 51 1 -2.6602 -6.2678 -0.3294 52 1 -4.1261 -6.9233 0.4390 53 1 -3.5732 -5.2788 0.8353 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496008073.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:42 Heat of formation + Delta-G solvation = -148.930167 kcal Electronic energy + Delta-G solvation = -31958.131009 eV Core-core repulsion = 27828.710654 eV Total energy + Delta-G solvation = -4129.420355 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.96544 -40.86291 -39.63967 -37.74750 -36.61712 -35.27645 -34.34255 -33.78641 -33.19822 -30.81498 -28.82452 -28.29783 -28.24251 -27.68541 -25.96186 -24.24203 -23.15541 -22.77739 -21.11595 -20.40908 -20.00686 -19.26412 -18.85056 -17.82826 -17.42299 -17.16260 -16.62451 -16.35107 -16.22575 -16.00471 -15.85860 -15.47695 -15.37626 -14.96229 -14.78900 -14.45100 -14.22451 -13.97877 -13.48929 -13.34279 -13.32458 -13.22658 -13.11770 -12.99946 -12.91216 -12.87303 -12.81384 -12.79953 -12.66541 -12.55877 -12.40974 -12.21673 -12.20560 -12.10081 -11.87495 -11.40825 -11.32582 -11.29055 -11.02469 -10.99854 -10.94541 -10.19095 -10.02168 -9.64557 -8.30850 -5.95821 1.26238 1.35759 1.40543 1.54123 1.86127 2.08106 2.28351 3.06417 3.11684 3.23745 3.69531 3.76720 3.81728 3.83345 3.86638 4.01045 4.09944 4.20416 4.33000 4.40600 4.46444 4.52265 4.56452 4.64869 4.65853 4.67213 4.71615 4.81018 4.81577 4.82363 4.89045 4.91178 4.93313 5.02066 5.05720 5.16003 5.17930 5.25094 5.29601 5.31427 5.34639 5.37834 5.38817 5.45927 5.47515 5.57638 5.62248 5.66582 6.12581 6.48268 6.51230 7.20531 7.42603 7.52606 8.08960 8.71062 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012553 B = 0.003104 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.033318 B = 9017.112848 C =10643.239226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.469 5.469 3 C -0.340 4.340 4 H 0.072 0.928 5 C -0.005 4.005 6 N -0.899 5.899 7 Si 0.987 3.013 8 H -0.274 1.274 9 H -0.268 1.268 10 H -0.276 1.276 11 C 0.442 3.558 12 O -0.618 6.618 13 C -0.113 4.113 14 C -0.062 4.062 15 H 0.082 0.918 16 C -0.116 4.116 17 C -0.112 4.112 18 C -0.109 4.109 19 C -0.125 4.125 20 C 0.178 3.822 21 H 0.084 0.916 22 N -0.694 5.694 23 C 0.649 3.351 24 O -0.590 6.590 25 O -0.373 6.373 26 C 0.125 3.875 27 C -0.177 4.177 28 C -0.137 4.137 29 C -0.181 4.181 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.271 0.729 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.409 0.591 45 H 0.061 0.939 46 H 0.089 0.911 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.102 0.898 50 H 0.069 0.931 51 H 0.064 0.936 52 H 0.090 0.910 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.493 -20.232 2.708 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.188 5.188 3 C -0.468 4.468 4 H 0.090 0.910 5 C -0.206 4.206 6 N -0.538 5.538 7 Si 0.811 3.189 8 H -0.198 1.198 9 H -0.193 1.193 10 H -0.202 1.202 11 C 0.232 3.768 12 O -0.506 6.506 13 C -0.153 4.153 14 C -0.082 4.082 15 H 0.101 0.899 16 C -0.154 4.154 17 C -0.149 4.149 18 C -0.147 4.147 19 C -0.163 4.163 20 C 0.074 3.926 21 H 0.102 0.898 22 N -0.354 5.354 23 C 0.403 3.597 24 O -0.481 6.481 25 O -0.288 6.288 26 C 0.088 3.912 27 C -0.234 4.234 28 C -0.194 4.194 29 C -0.238 4.238 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.246 0.754 45 H 0.080 0.920 46 H 0.108 0.892 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.121 0.879 50 H 0.088 0.912 51 H 0.083 0.917 52 H 0.109 0.891 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.265 -20.389 2.308 21.455 hybrid contribution 0.304 1.545 0.204 1.588 sum -5.961 -18.845 2.513 19.924 Atomic orbital electron populations 1.21373 0.79781 0.99707 1.00905 1.43880 1.06523 1.04959 1.63476 1.19637 0.99260 0.85974 1.41941 0.91014 1.26055 0.97037 1.02779 0.94736 1.70079 1.18049 1.30174 1.35545 0.84969 0.78295 0.77501 0.78142 1.19821 1.19273 1.20182 1.20973 0.88068 0.86066 0.81709 1.90447 1.15631 1.87821 1.56660 1.21544 0.98591 0.91404 1.03789 1.21040 0.95816 0.91041 1.00262 0.89933 1.21607 0.98252 0.99544 0.95972 1.21485 0.97520 0.93868 1.02039 1.21459 0.98719 0.97249 0.97234 1.21893 0.97631 0.97428 0.99348 1.20924 0.89133 0.94347 0.88149 0.89810 1.44917 1.22233 1.50170 1.18033 1.18193 0.80406 0.79127 0.82021 1.90873 1.76210 1.51288 1.29715 1.86324 1.35786 1.66917 1.39774 1.22384 0.81768 0.89075 0.97934 1.22448 1.03331 0.94812 1.02804 1.21889 0.99453 1.03746 0.94303 1.22479 1.00738 1.01720 0.98840 0.93726 0.93187 0.91938 0.91901 0.89450 0.89182 0.92649 0.92295 0.92203 0.91494 0.90660 0.92116 0.89912 0.91708 0.75431 0.91980 0.89195 0.91718 0.91648 0.87923 0.91198 0.91746 0.89111 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.63 8.52 127.77 1.09 6.72 16 2 N -0.47 -24.21 3.02 -658.89 -1.99 -26.20 16 3 C -0.34 -19.41 9.29 84.04 0.78 -18.63 16 4 H 0.07 4.37 7.40 -2.91 -0.02 4.35 16 5 C 0.00 -0.26 5.11 84.93 0.43 0.17 16 6 N -0.90 -48.09 10.63 21.66 0.23 -47.86 16 7 Si 0.99 42.93 29.57 68.60 2.03 44.96 16 8 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 9 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 10 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 11 C 0.44 20.91 7.34 87.66 0.64 21.55 16 12 O -0.62 -33.08 13.66 -3.07 -0.04 -33.12 16 13 C -0.11 -3.88 3.47 29.85 0.10 -3.78 16 14 C -0.06 -1.83 1.63 -10.79 -0.02 -1.84 16 15 H 0.08 2.65 7.96 -2.39 -0.02 2.63 16 16 C -0.12 -3.43 4.77 30.59 0.15 -3.28 16 17 C -0.11 -2.63 5.92 30.60 0.18 -2.45 16 18 C -0.11 -2.16 5.77 30.60 0.18 -1.98 16 19 C -0.12 -2.65 5.60 30.59 0.17 -2.48 16 20 C 0.18 4.36 2.23 44.99 0.10 4.46 16 21 H 0.08 2.21 7.58 -2.39 -0.02 2.19 16 22 N -0.69 -16.66 3.62 -570.12 -2.06 -18.73 16 23 C 0.65 17.12 8.02 129.79 1.04 18.17 16 24 O -0.59 -17.57 11.54 19.78 0.23 -17.34 16 25 O -0.37 -9.08 9.94 -55.40 -0.55 -9.63 16 26 C 0.12 2.41 1.13 -10.79 -0.01 2.40 16 27 C -0.18 -3.17 8.37 71.98 0.60 -2.57 16 28 C -0.14 -1.86 8.85 71.98 0.64 -1.22 16 29 C -0.18 -3.56 8.37 71.98 0.60 -2.96 16 30 H 0.04 2.08 7.55 -2.39 -0.02 2.06 16 31 H 0.05 2.38 7.06 -2.39 -0.02 2.36 16 32 H 0.06 2.28 6.36 -2.39 -0.02 2.26 16 33 H 0.27 13.60 8.31 -92.70 -0.77 12.83 16 34 H 0.09 2.82 7.58 -2.38 -0.02 2.81 16 35 H 0.09 2.85 7.40 -2.39 -0.02 2.83 16 36 H 0.05 2.14 5.95 -2.39 -0.01 2.13 16 37 H 0.06 1.58 6.50 -2.39 -0.02 1.56 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.06 1.20 7.60 -2.39 -0.02 1.18 16 42 H 0.08 1.64 8.14 -2.38 -0.02 1.63 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.41 9.31 6.78 -92.71 -0.63 8.69 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.06 1.51 5.88 -2.39 -0.01 1.49 16 48 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.06 1.61 5.88 -2.39 -0.01 1.60 16 52 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 53 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -67.59 401.18 4.79 -62.80 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.27 Total: 32.85 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 6.68 Total: 12.28 kcal Atomic # 7 Polarization: -88.97 SS G_CDS: -3.82 Total: -92.79 kcal Atomic # 8 Polarization: -59.73 SS G_CDS: -0.36 Total: -60.10 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -67.59 4.79 -62.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496008073.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.131 kcal (2) G-P(sol) polarization free energy of solvation -67.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds