Wall clock time and date at job start Sat Apr 11 2020 06:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46807 * 2 1 4 4 C 1.52996 * 109.47554 * 239.99640 * 2 1 3 5 5 O 1.45199 * 109.46964 * 119.99113 * 2 1 3 6 6 C 1.34642 * 116.99927 * 60.00506 * 5 2 1 7 7 O 1.21513 * 119.99610 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00346 * 179.97438 * 6 5 2 9 9 C 1.46546 * 119.73968 * 0.02562 * 8 6 5 10 10 C 1.53147 * 108.24062 * 236.45036 * 9 8 6 11 11 C 1.53053 * 109.22544 * 301.57030 * 10 9 8 12 12 H 1.09003 * 113.81174 * 275.74901 * 11 10 9 13 13 C 1.54105 * 111.37340 * 142.59580 * 11 10 9 14 14 N 1.47696 * 87.55178 * 273.84049 * 13 11 10 15 15 C 1.46897 * 110.99655 * 220.17864 * 14 13 11 16 16 C 1.52999 * 109.47515 * 264.85464 * 15 14 13 17 17 O 1.42899 * 109.46889 * 65.00249 * 16 15 14 18 18 C 1.42905 * 113.99778 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.46972 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99963 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99865 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00309 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 120.00236 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47160 * 89.99730 * 23 21 19 25 25 H 1.48503 * 109.47061 * 209.99752 * 23 21 19 26 26 H 1.48500 * 109.46598 * 329.99398 * 23 21 19 27 27 C 1.46877 * 86.86528 * 331.49331 * 14 13 11 28 28 H 1.08998 * 111.43969 * 276.27314 * 27 14 13 29 29 C 1.45693 * 119.74997 * 180.02562 * 8 6 5 30 30 H 1.09004 * 109.47537 * 300.00259 * 1 2 3 31 31 H 1.09000 * 109.47493 * 60.01016 * 1 2 3 32 32 H 1.09000 * 109.46768 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47010 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.46683 * 299.99296 * 3 2 1 35 35 H 1.08992 * 109.47388 * 59.99228 * 3 2 1 36 36 H 1.09001 * 109.46670 * 300.00010 * 4 2 1 37 37 H 1.08992 * 109.47190 * 59.99553 * 4 2 1 38 38 H 1.08994 * 109.47174 * 179.97438 * 4 2 1 39 39 H 1.09002 * 109.70628 * 116.77360 * 9 8 6 40 40 H 1.08992 * 109.74813 * 356.16224 * 9 8 6 41 41 H 1.09006 * 109.51188 * 181.64455 * 10 9 8 42 42 H 1.09004 * 109.55046 * 61.52311 * 10 9 8 43 43 H 1.08998 * 113.54152 * 159.16975 * 13 11 10 44 44 H 1.08998 * 113.53582 * 28.51018 * 13 11 10 45 45 H 1.09002 * 109.46904 * 144.85593 * 15 14 13 46 46 H 1.09002 * 109.47542 * 24.85748 * 15 14 13 47 47 H 1.08997 * 109.46848 * 305.00167 * 16 15 14 48 48 H 1.08997 * 109.47286 * 185.00265 * 16 15 14 49 49 H 1.09004 * 109.47054 * 299.99711 * 18 17 16 50 50 H 1.09000 * 109.47187 * 59.99767 * 18 17 16 51 51 H 0.96992 * 120.00510 * 180.02562 * 22 21 19 52 52 H 1.08999 * 108.78384 * 19.13633 * 29 8 6 53 53 H 1.08998 * 108.78691 * 260.93868 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0139 -0.6843 1.1857 6 6 1.6522 -1.9722 1.3386 7 8 0.9509 -2.5094 0.5042 8 7 2.0679 -2.6655 2.4169 9 6 2.9131 -2.0118 3.4199 10 6 4.2001 -2.8286 3.5682 11 6 3.8445 -4.2590 3.9806 12 1 3.7012 -4.3848 5.0538 13 6 4.7718 -5.2860 3.3022 14 7 3.8475 -5.2652 2.1505 15 6 3.6553 -6.6157 1.6053 16 6 4.6196 -6.8365 0.4381 17 8 5.9646 -6.8114 0.9202 18 6 6.9500 -7.0086 -0.0958 19 6 8.3240 -6.9626 0.5214 20 1 8.4338 -6.7995 1.5834 21 6 9.4409 -7.1297 -0.2695 22 7 10.6401 -7.0891 0.2689 23 14 9.2510 -7.4125 -2.1063 24 1 9.2529 -6.1055 -2.8111 25 1 10.3799 -8.2421 -2.5987 26 1 7.9692 -8.1148 -2.3689 27 6 2.7876 -4.9292 3.1102 28 1 2.3845 -5.8223 3.5875 29 6 1.6737 -4.0589 2.5766 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6765 1.9564 0.8898 36 1 1.6767 -1.7490 -1.2490 37 1 1.6767 -0.2076 -2.1391 38 1 3.1300 -0.7209 -1.2493 39 1 2.3889 -1.9754 4.3749 40 1 3.1552 -1.0001 3.0947 41 1 4.8326 -2.3760 4.3319 42 1 4.7329 -2.8455 2.6174 43 1 4.8064 -6.2470 3.8154 44 1 5.7623 -4.8931 3.0726 45 1 2.6291 -6.7230 1.2540 46 1 3.8519 -7.3531 2.3835 47 1 4.4834 -6.0464 -0.3002 48 1 4.4169 -7.8033 -0.0227 49 1 6.7957 -7.9788 -0.5681 50 1 6.8620 -6.2217 -0.8449 51 1 11.4258 -7.2063 -0.2875 52 1 1.3578 -4.4474 1.6084 53 1 0.8295 -4.1083 3.2643 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496194521.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:24 Heat of formation + Delta-G solvation = -107.156400 kcal Electronic energy + Delta-G solvation = -31560.127009 eV Core-core repulsion = 27432.518100 eV Total energy + Delta-G solvation = -4127.608909 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.36272 -41.43246 -38.81264 -38.30636 -36.80163 -35.01344 -34.85001 -33.52376 -31.99804 -30.14472 -29.29754 -28.35598 -28.27656 -27.18553 -24.59500 -24.21388 -23.95331 -22.70401 -22.55666 -20.62330 -19.46931 -19.11852 -18.79138 -17.73569 -17.61124 -17.24809 -17.20929 -16.69871 -16.24930 -16.15992 -15.93098 -15.77553 -15.43404 -15.03295 -14.79943 -14.69994 -14.56022 -14.41184 -14.01324 -13.79882 -13.39417 -13.36330 -13.22036 -13.08362 -13.01413 -12.89060 -12.84842 -12.82305 -12.63634 -12.44635 -12.42375 -12.24643 -11.97423 -11.88243 -11.80951 -11.51568 -11.36017 -11.34136 -11.20576 -10.99122 -10.95001 -10.37542 -9.81681 -9.64717 -8.40938 -6.48115 1.18280 1.29002 1.31268 1.42187 1.81744 2.25192 2.87617 2.91381 2.96065 3.06810 3.31714 3.71254 3.77425 3.81965 3.96096 3.96779 3.97985 4.07072 4.23043 4.25940 4.39014 4.40313 4.46060 4.49958 4.51772 4.57209 4.62133 4.65344 4.67218 4.71859 4.76901 4.77519 4.83238 4.84334 4.88359 4.89379 4.92831 4.95595 5.06677 5.11246 5.13295 5.29217 5.34376 5.40076 5.43071 5.47318 5.49146 5.60604 5.90873 6.15026 6.34447 6.54941 6.71150 7.16130 7.32632 8.75988 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011309 B = 0.002906 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.304380 B = 9633.491818 C =10778.412756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.125 3.875 3 C -0.135 4.135 4 C -0.181 4.181 5 O -0.367 6.367 6 C 0.646 3.354 7 O -0.597 6.597 8 N -0.582 5.582 9 C 0.117 3.883 10 C -0.111 4.111 11 C -0.093 4.093 12 H 0.122 0.878 13 C 0.010 3.990 14 N -0.481 5.481 15 C 0.030 3.970 16 C 0.060 3.940 17 O -0.395 6.395 18 C 0.182 3.818 19 C -0.540 4.540 20 H 0.033 0.967 21 C 0.016 3.984 22 N -0.939 5.939 23 Si 0.951 3.049 24 H -0.263 1.263 25 H -0.269 1.269 26 H -0.249 1.249 27 C 0.022 3.978 28 H 0.106 0.894 29 C 0.148 3.852 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.042 0.958 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.104 0.896 46 H 0.057 0.943 47 H 0.035 0.965 48 H 0.054 0.946 49 H 0.009 0.991 50 H -0.001 1.001 51 H 0.273 0.727 52 H 0.072 0.928 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.387 14.713 5.728 29.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.089 3.911 3 C -0.192 4.192 4 C -0.238 4.238 5 O -0.281 6.281 6 C 0.401 3.599 7 O -0.488 6.488 8 N -0.321 5.321 9 C -0.004 4.004 10 C -0.149 4.149 11 C -0.112 4.112 12 H 0.140 0.860 13 C -0.119 4.119 14 N -0.204 5.204 15 C -0.098 4.098 16 C -0.017 4.017 17 O -0.315 6.315 18 C 0.106 3.894 19 C -0.578 4.578 20 H 0.051 0.949 21 C -0.183 4.183 22 N -0.579 5.579 23 Si 0.773 3.227 24 H -0.188 1.188 25 H -0.194 1.194 26 H -0.173 1.173 27 C -0.088 4.088 28 H 0.124 0.876 29 C 0.026 3.974 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.061 0.939 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.122 0.878 46 H 0.076 0.924 47 H 0.053 0.947 48 H 0.072 0.928 49 H 0.027 0.973 50 H 0.017 0.983 51 H 0.083 0.917 52 H 0.090 0.910 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -24.241 15.011 4.973 28.943 hybrid contribution 0.574 -1.222 -0.674 1.509 sum -23.667 13.789 4.299 27.727 Atomic orbital electron populations 1.22432 0.93473 1.03646 1.03665 1.22368 0.94873 0.92578 0.81278 1.21873 1.02145 0.90674 1.04487 1.22472 1.01091 1.02238 0.98022 1.86287 1.71582 1.23216 1.47034 1.18174 0.78908 0.80984 0.81810 1.90858 1.43063 1.70927 1.43998 1.46524 1.52715 1.11592 1.21305 1.21725 0.90302 0.96286 0.92105 1.21660 0.97499 0.93894 1.01860 1.22536 0.94274 0.94345 1.00001 0.85986 1.23942 0.97385 0.99259 0.91274 1.68999 1.06371 1.23447 1.21580 1.22687 0.98644 0.91271 0.97215 1.22552 0.82944 0.99245 0.97006 1.87860 1.14667 1.93561 1.35382 1.20253 0.87015 0.94164 0.87967 1.21094 0.90240 1.50682 0.95770 0.94884 1.25773 0.94137 0.93826 1.04535 1.70012 0.98739 1.50639 1.38480 0.85669 0.79279 0.79537 0.78239 1.18753 1.19378 1.17310 1.23080 0.93202 0.99247 0.93277 0.87633 1.20608 0.95870 0.78317 1.02575 0.91468 0.89270 0.92037 0.91826 0.88079 0.90593 0.92277 0.89086 0.93068 0.88133 0.88919 0.88367 0.93918 0.91071 0.92889 0.87788 0.92438 0.94703 0.92750 0.97307 0.98312 0.91742 0.91000 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 8.37 71.98 0.60 -2.55 16 2 C 0.13 2.50 1.13 -10.79 -0.01 2.49 16 3 C -0.13 -1.81 8.85 71.98 0.64 -1.17 16 4 C -0.18 -4.07 8.37 71.98 0.60 -3.47 16 5 O -0.37 -8.89 8.43 -55.51 -0.47 -9.36 16 6 C 0.65 17.57 7.69 129.79 1.00 18.57 16 7 O -0.60 -18.98 11.25 19.80 0.22 -18.75 16 8 N -0.58 -13.17 2.99 -957.49 -2.86 -16.03 16 9 C 0.12 2.03 6.40 86.42 0.55 2.58 16 10 C -0.11 -2.24 5.69 30.66 0.17 -2.07 16 11 C -0.09 -1.81 4.55 -10.59 -0.05 -1.85 16 12 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 13 C 0.01 0.30 6.47 81.56 0.53 0.83 16 14 N -0.48 -14.08 5.90 -935.19 -5.52 -19.60 16 15 C 0.03 0.87 5.24 86.30 0.45 1.32 16 16 C 0.06 2.21 6.28 71.98 0.45 2.66 16 17 O -0.40 -19.07 9.73 -148.98 -1.45 -20.52 16 18 C 0.18 9.61 4.76 71.24 0.34 9.95 16 19 C -0.54 -33.71 9.99 25.60 0.26 -33.45 16 20 H 0.03 2.30 8.06 -2.91 -0.02 2.27 16 21 C 0.02 0.94 5.47 84.65 0.46 1.40 16 22 N -0.94 -59.84 13.96 21.45 0.30 -59.54 16 23 Si 0.95 44.89 27.47 68.60 1.88 46.78 16 24 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 26 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 27 C 0.02 0.44 3.06 39.15 0.12 0.56 16 28 H 0.11 1.66 7.85 -2.39 -0.02 1.64 16 29 C 0.15 3.03 6.24 85.91 0.54 3.57 16 30 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.47 5.88 -2.39 -0.01 1.45 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 1.70 5.88 -2.39 -0.01 1.68 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 1.62 6.82 -2.39 -0.02 1.61 16 41 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.04 1.23 7.68 -2.38 -0.02 1.21 16 43 H 0.07 1.99 7.43 -2.39 -0.02 1.97 16 44 H 0.05 1.96 8.04 -2.39 -0.02 1.94 16 45 H 0.10 2.41 8.08 -2.39 -0.02 2.39 16 46 H 0.06 1.59 7.30 -2.39 -0.02 1.57 16 47 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.01 0.47 7.20 -2.38 -0.02 0.45 16 50 H 0.00 -0.04 7.57 -2.39 -0.02 -0.06 16 51 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 52 H 0.07 1.83 7.04 -2.39 -0.02 1.81 16 53 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -78.59 408.04 -0.43 -79.01 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.81 Total: 18.66 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 6.65 Total: -0.65 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -8.08 Total: -95.17 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -1.69 Total: -48.64 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.78 kcal Total: -78.59 -0.43 -79.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496194521.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.142 kcal (2) G-P(sol) polarization free energy of solvation -78.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds