Wall clock time and date at job start Sat Apr 11 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47369 * 2 1 4 4 H 1.08997 * 115.56034 * 29.30717 * 3 2 1 5 5 C 1.53004 * 117.49762 * 243.62455 * 3 2 1 6 6 C 1.52997 * 59.99885 * 252.50897 * 5 3 2 7 7 H 1.09006 * 117.52151 * 107.48446 * 6 5 3 8 8 N 1.46502 * 117.50143 * 252.50961 * 6 5 3 9 9 C 1.34770 * 120.00442 * 223.62463 * 8 6 5 10 10 O 1.21286 * 119.99994 * 359.97438 * 9 8 6 11 11 C 1.50704 * 120.00319 * 180.02562 * 9 8 6 12 12 H 1.09005 * 109.46826 * 299.99917 * 11 9 8 13 13 C 1.52995 * 109.47260 * 59.99316 * 11 9 8 14 14 C 1.52997 * 109.47235 * 185.27219 * 13 11 9 15 15 C 1.50700 * 109.47143 * 182.83947 * 14 13 11 16 16 H 1.08000 * 119.99894 * 5.81960 * 15 14 13 17 17 C 1.37873 * 119.99959 * 185.81901 * 15 14 13 18 18 N 1.31516 * 120.00177 * 188.04057 * 17 15 14 19 19 Si 1.86802 * 120.00135 * 8.04192 * 17 15 14 20 20 H 1.48501 * 109.47023 * 94.89220 * 19 17 15 21 21 H 1.48494 * 109.47173 * 214.89077 * 19 17 15 22 22 H 1.48498 * 109.47169 * 334.89602 * 19 17 15 23 23 N 1.46501 * 109.47356 * 179.97438 * 11 9 8 24 24 C 1.34775 * 120.00015 * 144.94743 * 23 11 9 25 25 O 1.21511 * 119.99949 * 354.47004 * 24 23 11 26 26 O 1.34638 * 119.99984 * 174.75298 * 24 23 11 27 27 C 1.45190 * 116.99906 * 182.29581 * 26 24 23 28 28 C 1.53000 * 109.47725 * 59.58441 * 27 26 24 29 29 C 1.53005 * 109.46955 * 179.58562 * 27 26 24 30 30 C 1.53003 * 109.47114 * 299.58124 * 27 26 24 31 31 H 1.08996 * 109.47545 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46856 * 300.00297 * 1 2 3 33 33 H 1.08999 * 109.47098 * 59.99847 * 1 2 3 34 34 H 1.09004 * 109.47140 * 240.00140 * 2 1 3 35 35 H 1.08999 * 109.47098 * 120.00153 * 2 1 3 36 36 H 1.08993 * 117.50001 * 145.02197 * 5 3 2 37 37 H 1.08995 * 117.49980 * 359.97438 * 5 3 2 38 38 H 0.97005 * 119.99243 * 43.62227 * 8 6 5 39 39 H 1.09000 * 109.47215 * 305.27779 * 13 11 9 40 40 H 1.09008 * 109.46639 * 65.27259 * 13 11 9 41 41 H 1.08999 * 109.47297 * 302.83674 * 14 13 11 42 42 H 1.09001 * 109.47000 * 62.84192 * 14 13 11 43 43 H 0.96999 * 120.00222 * 180.02562 * 18 17 15 44 44 H 0.97000 * 119.99959 * 324.94880 * 23 11 9 45 45 H 1.09002 * 109.46470 * 64.29711 * 28 27 26 46 46 H 1.08996 * 109.47287 * 184.29604 * 28 27 26 47 47 H 1.09000 * 109.46956 * 304.30151 * 28 27 26 48 48 H 1.09004 * 109.47143 * 60.00224 * 29 27 26 49 49 H 1.09001 * 109.47007 * 179.97438 * 29 27 26 50 50 H 1.08993 * 109.47247 * 299.99861 * 29 27 26 51 51 H 1.08997 * 109.46671 * 60.00529 * 30 27 26 52 52 H 1.09001 * 109.47234 * 180.02562 * 30 27 26 53 53 H 1.08996 * 109.47367 * 300.00256 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1717 0.4813 5 6 2.8440 1.9075 -1.2159 6 6 3.5501 1.6578 0.1182 7 1 4.1803 0.7718 0.1964 8 7 4.0098 2.8283 0.8698 9 6 5.2313 2.8266 1.4392 10 8 5.9500 1.8557 1.3297 11 6 5.7038 4.0305 2.2128 12 1 5.7205 4.9005 1.5564 13 6 4.7516 4.2917 3.3815 14 6 5.1545 5.5877 4.0878 15 6 4.2603 5.8086 5.2805 16 1 3.5454 5.0515 5.5671 17 6 4.3548 6.9773 6.0059 18 7 3.6918 7.1064 7.1343 19 14 5.4247 8.3775 5.3859 20 1 4.5897 9.3357 4.6178 21 1 6.0442 9.0759 6.5407 22 1 6.4904 7.8340 4.5061 23 7 7.0522 3.7812 2.7284 24 6 7.9413 4.7911 2.8063 25 8 7.6598 5.8843 2.3567 26 8 9.1435 4.5872 3.3771 27 6 10.0308 5.7325 3.4723 28 6 9.3573 6.8325 4.2953 29 6 11.3349 5.3121 4.1532 30 6 10.3354 6.2598 2.0687 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.7213 2.9426 -1.5344 37 1 3.0098 1.1857 -2.0156 38 1 3.4348 3.6047 0.9576 39 1 3.7324 4.3841 3.0061 40 1 4.8053 3.4618 4.0863 41 1 6.1903 5.5141 4.4190 42 1 5.0524 6.4247 3.3971 43 1 3.7580 7.9287 7.6445 44 1 7.3052 2.8893 3.0138 45 1 9.2096 6.4828 5.3171 46 1 9.9903 7.7197 4.3029 47 1 8.3922 7.0784 3.8523 48 1 11.8148 4.5285 3.5668 49 1 12.0012 6.1718 4.2243 50 1 11.1180 4.9364 5.1531 51 1 9.4063 6.5593 1.5836 52 1 11.0018 7.1193 2.1401 53 1 10.8152 5.4762 1.4823 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496546450.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:08 Heat of formation + Delta-G solvation = -113.770038 kcal Electronic energy + Delta-G solvation = -31140.659724 eV Core-core repulsion = 27012.764026 eV Total energy + Delta-G solvation = -4127.895698 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.71809 -39.91799 -38.13746 -37.06639 -35.07523 -34.07782 -33.77486 -32.97365 -31.71520 -30.98921 -27.99399 -27.33056 -27.18922 -24.34857 -24.04305 -22.82057 -21.57545 -20.96595 -20.47483 -20.11381 -19.81473 -18.23916 -17.08771 -16.88638 -16.39538 -16.25630 -15.83838 -15.24950 -14.89752 -14.61784 -14.57435 -14.34231 -14.20363 -14.17824 -13.62219 -13.42668 -13.00802 -12.86559 -12.75601 -12.64350 -12.42195 -12.33940 -12.17096 -11.95703 -11.81248 -11.73393 -11.51907 -11.38296 -11.32283 -11.28412 -11.18540 -11.09146 -10.90672 -10.43889 -10.22274 -10.17632 -10.07357 -9.77324 -9.67908 -9.60583 -9.25776 -8.85933 -8.74094 -8.45316 -6.04693 -4.02061 2.26436 2.51197 2.98941 3.27454 3.34023 3.42671 3.54316 3.65400 4.37573 4.43994 4.49267 4.56503 4.64074 4.72649 4.84723 4.88168 4.93358 5.03603 5.10698 5.22862 5.30055 5.36612 5.44240 5.45523 5.52464 5.56264 5.63578 5.69275 5.74570 5.76212 5.76320 5.83772 5.88152 5.88999 6.01712 6.02979 6.09048 6.09278 6.29921 6.36892 6.39551 6.52850 6.68844 6.74530 6.79548 7.30746 7.36792 7.40769 7.71657 7.79691 8.11107 8.51371 8.70841 9.00046 9.59353 11.08072 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009035 B = 0.003514 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.244692 B = 7965.856469 C =10400.855733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.158 4.158 4 H 0.110 0.890 5 C -0.189 4.189 6 C 0.085 3.915 7 H 0.137 0.863 8 N -0.698 5.698 9 C 0.520 3.480 10 O -0.539 6.539 11 C 0.142 3.858 12 H 0.122 0.878 13 C -0.112 4.112 14 C 0.000 4.000 15 C -0.524 4.524 16 H 0.070 0.930 17 C 0.070 3.930 18 N -0.902 5.902 19 Si 0.867 3.133 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.249 1.249 23 N -0.689 5.689 24 C 0.660 3.340 25 O -0.562 6.562 26 O -0.364 6.364 27 C 0.138 3.862 28 C -0.190 4.190 29 C -0.139 4.139 30 C -0.182 4.182 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.407 0.593 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.015 0.985 42 H 0.018 0.982 43 H 0.262 0.738 44 H 0.411 0.589 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.095 0.905 48 H 0.064 0.936 49 H 0.078 0.922 50 H 0.067 0.933 51 H 0.090 0.910 52 H 0.067 0.933 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.526 -9.283 -14.864 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.177 4.177 4 H 0.128 0.872 5 C -0.228 4.228 6 C -0.021 4.021 7 H 0.154 0.846 8 N -0.348 5.348 9 C 0.307 3.693 10 O -0.415 6.415 11 C 0.034 3.966 12 H 0.139 0.861 13 C -0.151 4.151 14 C -0.038 4.038 15 C -0.562 4.562 16 H 0.088 0.912 17 C -0.131 4.131 18 N -0.540 5.540 19 Si 0.694 3.306 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.173 1.173 23 N -0.349 5.349 24 C 0.413 3.587 25 O -0.450 6.450 26 O -0.279 6.279 27 C 0.101 3.899 28 C -0.248 4.248 29 C -0.196 4.196 30 C -0.240 4.240 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.243 0.757 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.033 0.967 42 H 0.037 0.963 43 H 0.072 0.928 44 H 0.247 0.753 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.114 0.886 48 H 0.083 0.917 49 H 0.096 0.904 50 H 0.086 0.914 51 H 0.109 0.891 52 H 0.085 0.915 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.983 -9.267 -14.972 18.299 hybrid contribution 0.204 0.967 0.028 0.988 sum 5.186 -8.301 -14.944 17.864 Atomic orbital electron populations 1.21746 0.95291 1.01616 1.02052 1.21108 0.96117 0.93638 1.02211 1.22934 0.93782 0.98894 1.02118 0.87193 1.23629 1.04119 1.02900 0.92164 1.21701 0.94027 0.91335 0.95047 0.84568 1.45311 1.17334 1.18374 1.53790 1.20865 0.81044 0.89148 0.78265 1.90670 1.54775 1.35677 1.60420 1.21042 0.82244 0.95960 0.97349 0.86051 1.21991 0.96435 1.01877 0.94803 1.19493 0.97053 0.91584 0.95631 1.21086 1.20581 1.03903 1.10585 0.91172 1.24979 0.95233 0.98583 0.94325 1.69940 1.43242 1.26969 1.13870 0.86960 0.82059 0.82702 0.78881 1.20539 1.21618 1.17310 1.44121 1.11036 1.11539 1.68156 1.17805 0.79801 0.83842 0.77219 1.90900 1.78593 1.23600 1.51939 1.86267 1.25509 1.41181 1.74972 1.22022 0.87936 0.83649 0.96316 1.22627 1.03893 0.97678 1.00555 1.21848 0.94271 1.02299 1.01219 1.22525 1.04175 1.01245 0.96010 0.92711 0.92454 0.92659 0.91736 0.91325 0.88428 0.88098 0.75721 0.91075 0.91526 0.96651 0.96335 0.92826 0.75326 0.91904 0.91475 0.88621 0.91703 0.90356 0.91374 0.89127 0.91454 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.87 37.15 0.37 -0.69 16 2 C -0.09 -0.72 6.21 -26.73 -0.17 -0.88 16 3 C -0.16 -1.34 5.66 -90.62 -0.51 -1.86 16 4 H 0.11 0.94 8.07 -51.93 -0.42 0.52 16 5 C -0.19 -1.56 10.10 -26.73 -0.27 -1.83 16 6 C 0.08 0.88 6.15 -67.93 -0.42 0.47 16 7 H 0.14 1.58 7.40 -51.93 -0.38 1.20 16 8 N -0.70 -8.14 5.42 -53.80 -0.29 -8.44 16 9 C 0.52 7.62 7.22 -10.99 -0.08 7.54 16 10 O -0.54 -9.14 15.56 5.55 0.09 -9.05 16 11 C 0.14 2.27 2.65 -69.08 -0.18 2.09 16 12 H 0.12 1.96 7.22 -51.93 -0.37 1.59 16 13 C -0.11 -2.06 4.77 -26.73 -0.13 -2.19 16 14 C 0.00 0.00 3.22 -27.88 -0.09 -0.09 16 15 C -0.52 -14.70 9.64 -34.44 -0.33 -15.04 16 16 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 17 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 18 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 19 Si 0.87 21.97 27.44 -169.99 -4.66 17.30 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.25 -6.18 5.75 56.52 0.32 -5.85 16 23 N -0.69 -11.62 4.59 -59.86 -0.28 -11.89 16 24 C 0.66 12.07 6.49 54.05 0.35 12.42 16 25 O -0.56 -11.24 10.65 -19.28 -0.21 -11.45 16 26 O -0.36 -6.15 9.94 -40.32 -0.40 -6.55 16 27 C 0.14 2.01 1.13 -90.62 -0.10 1.91 16 28 C -0.19 -3.11 8.42 37.16 0.31 -2.79 16 29 C -0.14 -1.55 8.85 37.16 0.33 -1.22 16 30 C -0.18 -2.43 8.38 37.16 0.31 -2.12 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.45 7.88 -51.93 -0.41 0.04 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 0.74 8.03 -51.93 -0.42 0.32 16 38 H 0.41 4.08 8.19 -40.82 -0.33 3.75 16 39 H 0.07 1.18 7.42 -51.93 -0.39 0.79 16 40 H 0.07 1.27 8.14 -51.92 -0.42 0.84 16 41 H 0.02 0.38 6.16 -51.93 -0.32 0.06 16 42 H 0.02 0.44 6.98 -51.93 -0.36 0.08 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.41 6.48 8.19 -40.82 -0.33 6.15 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.10 1.91 4.89 -51.93 -0.25 1.66 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.09 1.43 5.82 -51.93 -0.30 1.13 16 52 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 53 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 420.17 15.07 6.33 6.33 Total: -1.00 -33.71 420.17 -8.78 -42.49 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -9.42 Total: 10.63 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -0.71 Total: -2.33 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.21 Total: -47.37 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.52 Total: -27.05 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.66 Total: 17.30 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.71 -8.78 -42.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496546450.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.281 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds