Wall clock time and date at job start Sat Apr 11 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47369 * 2 1 4 4 H 1.08997 * 115.56034 * 29.30717 * 3 2 1 5 5 C 1.53004 * 117.49762 * 243.62455 * 3 2 1 6 6 C 1.52997 * 59.99885 * 252.50897 * 5 3 2 7 7 H 1.09006 * 117.52151 * 107.48446 * 6 5 3 8 8 N 1.46502 * 117.50143 * 252.50961 * 6 5 3 9 9 C 1.34770 * 120.00442 * 223.62463 * 8 6 5 10 10 O 1.21286 * 119.99994 * 359.97438 * 9 8 6 11 11 C 1.50704 * 120.00319 * 180.02562 * 9 8 6 12 12 H 1.09005 * 109.46826 * 299.99917 * 11 9 8 13 13 C 1.52995 * 109.47260 * 59.99316 * 11 9 8 14 14 C 1.52997 * 109.47235 * 185.27219 * 13 11 9 15 15 C 1.50700 * 109.47143 * 182.83947 * 14 13 11 16 16 H 1.08000 * 119.99894 * 5.81960 * 15 14 13 17 17 C 1.37873 * 119.99959 * 185.81901 * 15 14 13 18 18 N 1.31516 * 120.00177 * 188.04057 * 17 15 14 19 19 Si 1.86802 * 120.00135 * 8.04192 * 17 15 14 20 20 H 1.48501 * 109.47023 * 94.89220 * 19 17 15 21 21 H 1.48494 * 109.47173 * 214.89077 * 19 17 15 22 22 H 1.48498 * 109.47169 * 334.89602 * 19 17 15 23 23 N 1.46501 * 109.47356 * 179.97438 * 11 9 8 24 24 C 1.34775 * 120.00015 * 144.94743 * 23 11 9 25 25 O 1.21511 * 119.99949 * 354.47004 * 24 23 11 26 26 O 1.34638 * 119.99984 * 174.75298 * 24 23 11 27 27 C 1.45190 * 116.99906 * 182.29581 * 26 24 23 28 28 C 1.53000 * 109.47725 * 59.58441 * 27 26 24 29 29 C 1.53005 * 109.46955 * 179.58562 * 27 26 24 30 30 C 1.53003 * 109.47114 * 299.58124 * 27 26 24 31 31 H 1.08996 * 109.47545 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46856 * 300.00297 * 1 2 3 33 33 H 1.08999 * 109.47098 * 59.99847 * 1 2 3 34 34 H 1.09004 * 109.47140 * 240.00140 * 2 1 3 35 35 H 1.08999 * 109.47098 * 120.00153 * 2 1 3 36 36 H 1.08993 * 117.50001 * 145.02197 * 5 3 2 37 37 H 1.08995 * 117.49980 * 359.97438 * 5 3 2 38 38 H 0.97005 * 119.99243 * 43.62227 * 8 6 5 39 39 H 1.09000 * 109.47215 * 305.27779 * 13 11 9 40 40 H 1.09008 * 109.46639 * 65.27259 * 13 11 9 41 41 H 1.08999 * 109.47297 * 302.83674 * 14 13 11 42 42 H 1.09001 * 109.47000 * 62.84192 * 14 13 11 43 43 H 0.96999 * 120.00222 * 180.02562 * 18 17 15 44 44 H 0.97000 * 119.99959 * 324.94880 * 23 11 9 45 45 H 1.09002 * 109.46470 * 64.29711 * 28 27 26 46 46 H 1.08996 * 109.47287 * 184.29604 * 28 27 26 47 47 H 1.09000 * 109.46956 * 304.30151 * 28 27 26 48 48 H 1.09004 * 109.47143 * 60.00224 * 29 27 26 49 49 H 1.09001 * 109.47007 * 179.97438 * 29 27 26 50 50 H 1.08993 * 109.47247 * 299.99861 * 29 27 26 51 51 H 1.08997 * 109.46671 * 60.00529 * 30 27 26 52 52 H 1.09001 * 109.47234 * 180.02562 * 30 27 26 53 53 H 1.08996 * 109.47367 * 300.00256 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1717 0.4813 5 6 2.8440 1.9075 -1.2159 6 6 3.5501 1.6578 0.1182 7 1 4.1803 0.7718 0.1964 8 7 4.0098 2.8283 0.8698 9 6 5.2313 2.8266 1.4392 10 8 5.9500 1.8557 1.3297 11 6 5.7038 4.0305 2.2128 12 1 5.7205 4.9005 1.5564 13 6 4.7516 4.2917 3.3815 14 6 5.1545 5.5877 4.0878 15 6 4.2603 5.8086 5.2805 16 1 3.5454 5.0515 5.5671 17 6 4.3548 6.9773 6.0059 18 7 3.6918 7.1064 7.1343 19 14 5.4247 8.3775 5.3859 20 1 4.5897 9.3357 4.6178 21 1 6.0442 9.0759 6.5407 22 1 6.4904 7.8340 4.5061 23 7 7.0522 3.7812 2.7284 24 6 7.9413 4.7911 2.8063 25 8 7.6598 5.8843 2.3567 26 8 9.1435 4.5872 3.3771 27 6 10.0308 5.7325 3.4723 28 6 9.3573 6.8325 4.2953 29 6 11.3349 5.3121 4.1532 30 6 10.3354 6.2598 2.0687 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.7213 2.9426 -1.5344 37 1 3.0098 1.1857 -2.0156 38 1 3.4348 3.6047 0.9576 39 1 3.7324 4.3841 3.0061 40 1 4.8053 3.4618 4.0863 41 1 6.1903 5.5141 4.4190 42 1 5.0524 6.4247 3.3971 43 1 3.7580 7.9287 7.6445 44 1 7.3052 2.8893 3.0138 45 1 9.2096 6.4828 5.3171 46 1 9.9903 7.7197 4.3029 47 1 8.3922 7.0784 3.8523 48 1 11.8148 4.5285 3.5668 49 1 12.0012 6.1718 4.2243 50 1 11.1180 4.9364 5.1531 51 1 9.4063 6.5593 1.5836 52 1 11.0018 7.1193 2.1401 53 1 10.8152 5.4762 1.4823 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496546450.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:07 Heat of formation + Delta-G solvation = -136.233950 kcal Electronic energy + Delta-G solvation = -31141.633832 eV Core-core repulsion = 27012.764026 eV Total energy + Delta-G solvation = -4128.869806 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.02712 -41.05978 -39.07406 -38.26625 -36.58653 -35.39875 -34.85036 -34.72589 -33.02879 -32.22112 -29.60572 -28.37047 -28.27937 -26.04639 -24.72760 -23.91773 -22.77748 -22.19295 -21.67429 -21.32557 -20.98976 -19.53435 -18.98515 -18.17559 -17.67694 -17.39756 -17.17265 -16.43876 -16.31727 -15.98065 -15.63491 -15.43973 -15.32125 -15.27353 -15.06196 -14.77636 -14.62104 -14.26774 -13.81272 -13.60082 -13.53440 -13.35893 -13.31172 -13.02945 -12.93734 -12.90796 -12.81901 -12.80779 -12.49488 -12.30543 -12.13974 -12.13774 -12.07811 -11.92002 -11.89182 -11.72795 -11.45475 -11.34497 -11.12935 -11.02976 -10.87815 -10.71460 -10.19119 -9.71955 -8.31965 -6.33153 1.02737 1.30657 1.34032 1.35067 1.51981 1.74220 2.07913 2.34744 2.91157 3.04414 3.13456 3.46315 3.73439 3.76625 3.80608 3.85995 3.95623 3.98451 4.01039 4.05493 4.30699 4.43113 4.51040 4.54758 4.58273 4.61403 4.66042 4.76583 4.78020 4.82042 4.84180 4.86998 4.89030 4.97969 5.02866 5.06460 5.18640 5.19024 5.23710 5.29706 5.30880 5.38485 5.39832 5.43764 5.50028 5.52721 5.58691 5.65066 6.25710 6.34426 6.36352 6.74350 7.02125 7.31671 7.34193 8.83974 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009035 B = 0.003514 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.244692 B = 7965.856469 C =10400.855733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.148 4.148 4 H 0.112 0.888 5 C -0.172 4.172 6 C 0.059 3.941 7 H 0.123 0.877 8 N -0.684 5.684 9 C 0.527 3.473 10 O -0.563 6.563 11 C 0.150 3.850 12 H 0.124 0.876 13 C -0.103 4.103 14 C 0.010 3.990 15 C -0.527 4.527 16 H 0.040 0.960 17 C 0.015 3.985 18 N -0.945 5.945 19 Si 0.930 3.070 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.245 1.245 23 N -0.689 5.689 24 C 0.654 3.346 25 O -0.581 6.581 26 O -0.370 6.370 27 C 0.125 3.875 28 C -0.190 4.190 29 C -0.133 4.133 30 C -0.176 4.176 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.416 0.584 39 H 0.091 0.909 40 H 0.058 0.942 41 H 0.003 0.997 42 H 0.017 0.983 43 H 0.265 0.735 44 H 0.415 0.585 45 H 0.051 0.949 46 H 0.093 0.907 47 H 0.058 0.942 48 H 0.076 0.924 49 H 0.105 0.895 50 H 0.063 0.937 51 H 0.063 0.937 52 H 0.092 0.908 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.492 -9.199 -16.817 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.167 4.167 4 H 0.130 0.870 5 C -0.210 4.210 6 C -0.046 4.046 7 H 0.141 0.859 8 N -0.334 5.334 9 C 0.312 3.688 10 O -0.442 6.442 11 C 0.043 3.957 12 H 0.141 0.859 13 C -0.142 4.142 14 C -0.028 4.028 15 C -0.565 4.565 16 H 0.058 0.942 17 C -0.182 4.182 18 N -0.586 5.586 19 Si 0.755 3.245 20 H -0.195 1.195 21 H -0.212 1.212 22 H -0.168 1.168 23 N -0.348 5.348 24 C 0.408 3.592 25 O -0.472 6.472 26 O -0.285 6.285 27 C 0.089 3.911 28 C -0.247 4.247 29 C -0.190 4.190 30 C -0.233 4.233 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.253 0.747 39 H 0.109 0.891 40 H 0.076 0.924 41 H 0.021 0.979 42 H 0.035 0.965 43 H 0.074 0.926 44 H 0.252 0.748 45 H 0.070 0.930 46 H 0.112 0.888 47 H 0.077 0.923 48 H 0.095 0.905 49 H 0.123 0.877 50 H 0.082 0.918 51 H 0.081 0.919 52 H 0.111 0.889 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.921 -9.197 -16.945 20.169 hybrid contribution -0.153 0.890 0.663 1.121 sum 5.768 -8.307 -16.282 19.167 Atomic orbital electron populations 1.21733 0.94683 1.02109 1.02030 1.21135 0.96602 0.93071 1.02347 1.22983 0.92241 0.99521 1.01982 0.86986 1.23699 1.01971 1.03754 0.91556 1.21805 0.95163 0.90528 0.97138 0.85921 1.45220 1.16243 1.19143 1.52817 1.20462 0.81786 0.88081 0.78434 1.90662 1.55725 1.36179 1.61657 1.20875 0.81417 0.97045 0.96410 0.85885 1.21815 0.98194 0.98875 0.95310 1.19317 0.95203 0.94095 0.94166 1.21432 1.20244 1.02953 1.11883 0.94179 1.25803 0.96736 1.01259 0.94434 1.70064 1.45282 1.27917 1.15300 0.85962 0.80493 0.79626 0.78450 1.19527 1.21250 1.16804 1.44189 1.11142 1.11577 1.67916 1.18009 0.80321 0.83737 0.77144 1.90888 1.79111 1.24354 1.52801 1.86287 1.25173 1.42438 1.74573 1.22431 0.88594 0.82826 0.97245 1.22606 1.02780 0.99560 0.99774 1.21880 0.92629 1.03834 1.00677 1.22460 1.03392 1.02515 0.94972 0.92028 0.93039 0.92094 0.90775 0.92102 0.87628 0.86782 0.74658 0.89082 0.92362 0.97897 0.96450 0.92609 0.74843 0.92995 0.88807 0.92327 0.90507 0.87672 0.91771 0.91853 0.88919 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.87 71.98 0.71 -1.13 16 2 C -0.09 -1.29 6.21 30.59 0.19 -1.10 16 3 C -0.15 -2.25 5.66 -10.79 -0.06 -2.31 16 4 H 0.11 1.69 8.07 -2.39 -0.02 1.67 16 5 C -0.17 -2.42 10.10 30.59 0.31 -2.12 16 6 C 0.06 1.15 6.15 44.99 0.28 1.43 16 7 H 0.12 2.78 7.40 -2.38 -0.02 2.76 16 8 N -0.68 -15.16 5.42 -442.53 -2.40 -17.56 16 9 C 0.53 15.09 7.22 87.66 0.63 15.72 16 10 O -0.56 -18.92 15.56 -3.05 -0.05 -18.97 16 11 C 0.15 4.76 2.65 44.24 0.12 4.88 16 12 H 0.12 3.90 7.22 -2.38 -0.02 3.89 16 13 C -0.10 -3.78 4.77 30.59 0.15 -3.63 16 14 C 0.01 0.46 3.22 29.85 0.10 0.56 16 15 C -0.53 -30.20 9.64 25.60 0.25 -29.96 16 16 H 0.04 2.48 7.99 -2.91 -0.02 2.45 16 17 C 0.02 0.89 5.47 84.65 0.46 1.36 16 18 N -0.94 -59.52 13.96 21.45 0.30 -59.22 16 19 Si 0.93 45.98 27.44 68.60 1.88 47.87 16 20 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 22 H -0.24 -11.86 5.75 99.48 0.57 -11.28 16 23 N -0.69 -23.25 4.59 -573.72 -2.64 -25.88 16 24 C 0.65 23.94 6.49 129.79 0.84 24.79 16 25 O -0.58 -23.34 10.65 19.81 0.21 -23.13 16 26 O -0.37 -12.33 9.94 -55.47 -0.55 -12.88 16 27 C 0.13 3.48 1.13 -10.79 -0.01 3.47 16 28 C -0.19 -6.03 8.42 71.98 0.61 -5.42 16 29 C -0.13 -2.62 8.85 71.98 0.64 -1.98 16 30 C -0.18 -4.38 8.38 71.98 0.60 -3.78 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.88 7.88 -2.38 -0.02 0.86 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 1.35 8.03 -2.39 -0.02 1.33 16 38 H 0.42 7.66 8.19 -92.70 -0.76 6.90 16 39 H 0.09 2.94 7.42 -2.39 -0.02 2.92 16 40 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 41 H 0.00 0.14 6.16 -2.39 -0.01 0.12 16 42 H 0.02 0.82 6.98 -2.39 -0.02 0.80 16 43 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 44 H 0.41 13.16 8.19 -92.71 -0.76 12.40 16 45 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.06 2.32 4.89 -2.39 -0.01 2.31 16 48 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 51 H 0.06 1.95 5.82 -2.39 -0.01 1.94 16 52 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 53 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -74.32 420.17 1.82 -72.51 By element: Atomic # 1 Polarization: 37.24 SS G_CDS: -0.75 Total: 36.50 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 5.81 Total: 0.77 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -4.74 Total: -102.66 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -0.39 Total: -54.98 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.87 kcal Total: -74.32 1.82 -72.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496546450.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.726 kcal (2) G-P(sol) polarization free energy of solvation -74.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds