Wall clock time and date at job start Sat Apr 11 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47269 * 2 1 4 4 H 1.09003 * 109.99756 * 306.64944 * 3 2 1 5 5 C 1.54324 * 109.88146 * 67.74067 * 3 2 1 6 6 H 1.09006 * 110.86873 * 23.17528 * 5 3 2 7 7 C 1.50695 * 110.72149 * 259.97345 * 5 3 2 8 8 O 1.21285 * 119.99824 * 5.02547 * 7 5 3 9 9 N 1.34777 * 119.99960 * 185.02263 * 7 5 3 10 10 C 1.46498 * 120.00337 * 0.02562 * 9 7 5 11 11 C 1.46500 * 120.00042 * 179.97438 * 9 7 5 12 12 C 1.50707 * 109.47130 * 89.99981 * 11 9 7 13 13 H 1.08004 * 119.99446 * 0.02562 * 12 11 9 14 14 C 1.37874 * 119.99994 * 179.97438 * 12 11 9 15 15 N 1.31520 * 119.99832 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00030 * 0.02562 * 14 12 11 17 17 H 1.48505 * 109.47194 * 90.00185 * 16 14 12 18 18 H 1.48501 * 109.46962 * 209.99583 * 16 14 12 19 19 H 1.48492 * 109.47101 * 329.99841 * 16 14 12 20 20 C 1.55150 * 102.94128 * 141.60925 * 5 3 2 21 21 C 1.54909 * 101.58348 * 324.49833 * 20 5 3 22 22 N 1.47013 * 109.88100 * 185.55000 * 3 2 1 23 23 C 1.34775 * 125.65125 * 61.90730 * 22 3 2 24 24 O 1.21508 * 119.99733 * 354.63017 * 23 22 3 25 25 O 1.34637 * 120.00211 * 174.62392 * 23 22 3 26 26 C 1.45202 * 117.00081 * 179.97438 * 25 23 22 27 27 C 1.53002 * 109.46720 * 60.00363 * 26 25 23 28 28 C 1.52998 * 109.47352 * 180.02562 * 26 25 23 29 29 C 1.52995 * 109.47312 * 300.00480 * 26 25 23 30 30 H 1.09007 * 109.46923 * 304.45946 * 1 2 3 31 31 H 1.09001 * 109.47282 * 64.45956 * 1 2 3 32 32 H 1.08997 * 109.47302 * 184.46135 * 1 2 3 33 33 H 1.09003 * 109.46949 * 239.99836 * 2 1 3 34 34 H 1.08997 * 109.46684 * 120.00235 * 2 1 3 35 35 H 1.08997 * 109.47074 * 89.99212 * 10 9 7 36 36 H 1.08992 * 109.47243 * 210.00102 * 10 9 7 37 37 H 1.09001 * 109.46614 * 329.99628 * 10 9 7 38 38 H 1.08996 * 109.47677 * 210.00534 * 11 9 7 39 39 H 1.09002 * 109.47191 * 330.00628 * 11 9 7 40 40 H 0.96996 * 119.99971 * 180.02562 * 15 14 12 41 41 H 1.08999 * 111.00796 * 206.42523 * 20 5 3 42 42 H 1.08999 * 111.00854 * 82.57369 * 20 5 3 43 43 H 1.09001 * 110.37044 * 278.17142 * 21 20 5 44 44 H 1.08998 * 110.36808 * 155.84704 * 21 20 5 45 45 H 1.09002 * 109.47046 * 59.99976 * 27 26 25 46 46 H 1.09004 * 109.46835 * 180.02562 * 27 26 25 47 47 H 1.08998 * 109.47356 * 299.99543 * 27 26 25 48 48 H 1.09007 * 109.46950 * 60.00417 * 28 26 25 49 49 H 1.09004 * 109.47220 * 180.02562 * 28 26 25 50 50 H 1.09002 * 109.47301 * 300.00568 * 28 26 25 51 51 H 1.09006 * 109.47232 * 59.99811 * 29 26 25 52 52 H 1.09004 * 109.47329 * 179.97438 * 29 26 25 53 53 H 1.09000 * 109.47479 * 299.99625 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5879 1.9978 -0.8218 5 6 1.6967 2.1205 1.3431 6 1 1.5528 1.3775 2.1276 7 6 0.4738 2.9900 1.2042 8 8 -0.1440 3.0053 0.1606 9 7 0.0666 3.7507 2.2396 10 6 0.8131 3.7327 3.5000 11 6 -1.1219 4.5964 2.1044 12 6 -2.3426 3.8180 2.5231 13 1 -2.2429 2.7958 2.8569 14 6 -3.5865 4.4113 2.4809 15 7 -4.6517 3.7322 2.8468 16 14 -3.7588 6.1797 1.9041 17 1 -3.9725 6.2025 0.4347 18 1 -4.9191 6.8109 2.5828 19 1 -2.5220 6.9314 2.2362 20 6 2.9543 2.9834 1.6282 21 6 4.0832 2.0825 1.0682 22 7 3.5041 1.4551 -0.1337 23 6 4.2011 0.9776 -1.1837 24 8 3.6248 0.3967 -2.0819 25 8 5.5361 1.1443 -1.2375 26 6 6.2217 0.6037 -2.3976 27 6 5.6739 1.2610 -3.6660 28 6 7.7208 0.8874 -2.2822 29 6 5.9930 -0.9075 -2.4668 30 1 -0.3633 0.5815 0.8474 31 1 -0.3634 0.4431 -0.9272 32 1 -0.3634 -1.0245 0.0799 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.5858 4.5011 3.4756 36 1 0.1323 3.9280 4.3284 37 1 1.2769 2.7553 3.6336 38 1 -1.0163 5.4759 2.7395 39 1 -1.2291 4.9091 1.0657 40 1 -5.5268 4.1494 2.8168 41 1 3.0806 3.1483 2.6982 42 1 2.9080 3.9309 1.0913 43 1 4.3584 1.3212 1.7982 44 1 4.9516 2.6845 0.8009 45 1 5.8369 2.3377 -3.6166 46 1 6.1884 0.8548 -4.5369 47 1 4.6061 1.0585 -3.7480 48 1 8.1107 0.4187 -1.3786 49 1 8.2354 0.4818 -3.1533 50 1 7.8841 1.9639 -2.2326 51 1 4.9251 -1.1100 -2.5489 52 1 6.5074 -1.3133 -3.3380 53 1 6.3833 -1.3759 -1.5633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496571081.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:18 Heat of formation + Delta-G solvation = -135.423533 kcal Electronic energy + Delta-G solvation = -31970.572551 eV Core-core repulsion = 27841.737887 eV Total energy + Delta-G solvation = -4128.834664 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.13281 -41.17578 -39.29573 -37.50495 -36.68864 -35.24857 -34.74670 -34.19953 -32.86964 -30.37166 -29.09095 -28.35480 -28.26282 -27.38610 -26.26371 -24.27376 -23.64499 -22.90240 -21.65460 -20.30680 -19.99537 -19.12249 -18.90909 -18.15852 -17.45890 -17.24322 -17.11834 -16.45265 -16.20240 -15.93820 -15.59590 -15.55984 -15.27086 -14.83586 -14.73495 -14.44789 -14.24598 -14.09092 -13.88618 -13.63905 -13.58055 -13.38997 -13.29718 -13.06712 -13.03074 -12.92064 -12.84024 -12.75915 -12.73737 -12.51881 -12.47209 -12.40319 -12.28119 -12.11276 -12.00526 -11.84817 -11.72346 -11.61397 -11.36149 -11.01004 -10.81902 -10.59554 -9.78803 -9.35522 -8.32511 -6.36808 0.98505 1.32721 1.37180 1.44775 1.74295 1.79017 2.30840 2.32101 2.85681 3.02375 3.33630 3.43528 3.65123 3.77543 3.81746 3.94994 3.96803 4.13528 4.17298 4.21808 4.31545 4.47408 4.50569 4.51935 4.62564 4.66046 4.71228 4.72643 4.74137 4.77843 4.84743 4.85940 4.88285 4.90249 4.91546 4.98507 5.00307 5.09214 5.09947 5.14524 5.16288 5.23982 5.29812 5.35734 5.39790 5.47796 5.48546 5.64825 6.25400 6.42893 6.64844 6.71559 7.23341 7.26475 7.43001 8.84292 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021347 B = 0.002652 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.329398 B =10554.071745 C =10802.969060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 C 0.175 3.825 4 H 0.056 0.944 5 C -0.106 4.106 6 H 0.134 0.866 7 C 0.510 3.490 8 O -0.585 6.585 9 N -0.601 5.601 10 C 0.071 3.929 11 C 0.223 3.777 12 C -0.531 4.531 13 H 0.031 0.969 14 C 0.010 3.990 15 N -0.946 5.946 16 Si 0.945 3.055 17 H -0.281 1.281 18 H -0.276 1.276 19 H -0.235 1.235 20 C -0.116 4.116 21 C 0.104 3.896 22 N -0.603 5.603 23 C 0.663 3.337 24 O -0.591 6.591 25 O -0.361 6.361 26 C 0.124 3.876 27 C -0.181 4.181 28 C -0.133 4.133 29 C -0.179 4.179 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.016 0.984 40 H 0.267 0.733 41 H 0.137 0.863 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.059 0.941 46 H 0.091 0.909 47 H 0.055 0.945 48 H 0.073 0.927 49 H 0.101 0.899 50 H 0.069 0.931 51 H 0.057 0.943 52 H 0.090 0.910 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.548 -4.147 -2.451 29.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C 0.072 3.928 4 H 0.074 0.926 5 C -0.128 4.128 6 H 0.152 0.848 7 C 0.298 3.702 8 O -0.466 6.466 9 N -0.332 5.332 10 C -0.071 4.071 11 C 0.101 3.899 12 C -0.569 4.569 13 H 0.049 0.951 14 C -0.188 4.188 15 N -0.586 5.586 16 Si 0.768 3.232 17 H -0.207 1.207 18 H -0.202 1.202 19 H -0.158 1.158 20 C -0.154 4.154 21 C -0.017 4.017 22 N -0.344 5.344 23 C 0.419 3.581 24 O -0.482 6.482 25 O -0.275 6.275 26 C 0.088 3.912 27 C -0.239 4.239 28 C -0.189 4.189 29 C -0.236 4.236 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.076 0.924 41 H 0.155 0.845 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.078 0.922 46 H 0.110 0.890 47 H 0.074 0.926 48 H 0.092 0.908 49 H 0.120 0.880 50 H 0.088 0.912 51 H 0.076 0.924 52 H 0.109 0.891 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 29.020 -4.319 -3.317 29.527 hybrid contribution -1.496 0.423 -0.583 1.660 sum 27.524 -3.896 -3.900 28.071 Atomic orbital electron populations 1.21583 0.95531 1.01308 1.00975 1.21787 0.95449 0.95372 1.03173 1.21205 0.77570 0.96910 0.97155 0.92569 1.22315 0.93708 0.98545 0.98246 0.84810 1.20696 0.85943 0.80332 0.83211 1.90673 1.58536 1.66941 1.30440 1.47840 1.27861 1.43426 1.14067 1.22163 0.96571 1.03946 0.84390 1.19337 0.83172 0.90815 0.96599 1.21552 0.92076 0.99418 1.43885 0.95112 1.25831 0.95207 1.02960 0.94784 1.70051 0.99379 1.39409 1.49762 0.85759 0.79470 0.79602 0.78364 1.20669 1.20172 1.15812 1.23035 0.89992 0.97277 1.05070 1.22631 0.96819 0.96652 0.85569 1.47281 1.06447 1.62075 1.18575 1.17622 0.81228 0.78046 0.81246 1.90891 1.70979 1.47005 1.39296 1.86301 1.18119 1.75223 1.47900 1.22431 0.92983 0.93676 0.82088 1.22486 1.02763 1.00969 0.97652 1.21865 0.89139 1.03462 1.04481 1.22460 1.03517 0.94006 1.03598 0.94278 0.94758 0.91419 0.91566 0.89789 0.89501 0.91676 0.88826 0.92962 0.96625 0.92399 0.84512 0.90908 0.88122 0.88417 0.92186 0.88996 0.92596 0.90784 0.88020 0.91235 0.92387 0.89144 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 9.04 71.98 0.65 -4.04 16 2 C -0.12 -3.54 5.41 30.60 0.17 -3.37 16 3 C 0.17 5.24 2.36 45.34 0.11 5.34 16 4 H 0.06 2.20 6.88 -2.39 -0.02 2.18 16 5 C -0.11 -2.76 1.33 -10.36 -0.01 -2.78 16 6 H 0.13 2.89 7.15 -2.38 -0.02 2.88 16 7 C 0.51 19.47 6.09 87.66 0.53 20.01 16 8 O -0.59 -28.70 14.00 -3.05 -0.04 -28.75 16 9 N -0.60 -22.62 2.86 -851.14 -2.43 -25.05 16 10 C 0.07 1.72 8.90 127.77 1.14 2.86 16 11 C 0.22 10.53 4.23 85.64 0.36 10.89 16 12 C -0.53 -30.66 9.94 25.60 0.25 -30.40 16 13 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 14 C 0.01 0.59 5.47 84.65 0.46 1.05 16 15 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 16 Si 0.94 44.33 27.47 68.60 1.88 46.21 16 17 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 19 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 20 C -0.12 -1.93 5.48 31.98 0.18 -1.76 16 21 C 0.10 1.64 6.95 86.85 0.60 2.25 16 22 N -0.60 -15.18 3.06 -918.24 -2.81 -17.99 16 23 C 0.66 18.55 7.75 129.79 1.01 19.56 16 24 O -0.59 -19.87 10.67 19.81 0.21 -19.66 16 25 O -0.36 -8.22 9.38 -55.47 -0.52 -8.74 16 26 C 0.12 2.26 1.13 -10.80 -0.01 2.25 16 27 C -0.18 -3.56 8.37 71.98 0.60 -2.95 16 28 C -0.13 -1.42 8.85 71.98 0.64 -0.78 16 29 C -0.18 -3.21 8.37 71.98 0.60 -2.61 16 30 H 0.04 1.49 6.29 -2.38 -0.01 1.48 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 2.15 6.55 -2.39 -0.02 2.13 16 34 H 0.08 2.04 8.01 -2.39 -0.02 2.02 16 35 H 0.09 1.47 7.67 -2.39 -0.02 1.45 16 36 H 0.06 1.75 8.07 -2.39 -0.02 1.73 16 37 H 0.09 1.66 5.94 -2.39 -0.01 1.64 16 38 H 0.05 2.24 7.13 -2.39 -0.02 2.22 16 39 H 0.02 0.81 6.85 -2.39 -0.02 0.79 16 40 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 41 H 0.14 1.23 6.40 -2.39 -0.02 1.21 16 42 H 0.07 1.42 8.04 -2.39 -0.02 1.40 16 43 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.10 1.31 7.98 -2.39 -0.02 1.29 16 45 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.06 1.50 5.88 -2.39 -0.01 1.49 16 48 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 49 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.06 1.44 5.88 -2.38 -0.01 1.42 16 52 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 53 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -82.83 404.33 4.69 -78.14 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.83 Total: 19.72 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 7.27 Total: 15.52 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -4.94 Total: -102.45 kcal Atomic # 8 Polarization: -56.79 SS G_CDS: -0.35 Total: -57.14 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -82.83 4.69 -78.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496571081.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.283 kcal (2) G-P(sol) polarization free energy of solvation -82.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds