Wall clock time and date at job start Sat Apr 11 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.46950 * 2 1 4 4 H 1.08994 * 110.00243 * 55.30508 * 3 2 1 5 5 C 1.54324 * 109.88090 * 294.20870 * 3 2 1 6 6 H 1.08997 * 110.72367 * 336.93282 * 5 3 2 7 7 C 1.50705 * 110.71744 * 100.02992 * 5 3 2 8 8 O 1.21280 * 120.00176 * 357.55726 * 7 5 3 9 9 N 1.34779 * 119.99820 * 177.56009 * 7 5 3 10 10 C 1.46499 * 119.99765 * 179.72307 * 9 7 5 11 11 C 1.52998 * 109.46851 * 180.27336 * 10 9 7 12 12 C 1.50704 * 109.46816 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00375 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99782 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00054 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00145 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46844 * 89.99999 * 16 14 12 18 18 H 1.48496 * 109.47145 * 210.00373 * 16 14 12 19 19 H 1.48501 * 109.46916 * 330.00693 * 16 14 12 20 20 C 1.55157 * 103.10457 * 218.47830 * 5 3 2 21 21 C 1.54915 * 101.58076 * 35.41576 * 20 5 3 22 22 N 1.47327 * 110.06308 * 176.47784 * 3 2 1 23 23 C 1.34771 * 125.61793 * 298.25211 * 22 3 2 24 24 O 1.21515 * 119.99658 * 354.69683 * 23 22 3 25 25 O 1.34635 * 120.00179 * 174.70682 * 23 22 3 26 26 C 1.45197 * 116.99826 * 179.97438 * 25 23 22 27 27 C 1.52999 * 109.47066 * 60.00188 * 26 25 23 28 28 C 1.53007 * 109.46965 * 179.97438 * 26 25 23 29 29 C 1.52994 * 109.47520 * 300.00051 * 26 25 23 30 30 H 1.09007 * 109.47313 * 305.18760 * 1 2 3 31 31 H 1.09001 * 109.47265 * 65.19074 * 1 2 3 32 32 H 1.08998 * 109.47384 * 185.18637 * 1 2 3 33 33 H 1.08996 * 109.46972 * 239.99832 * 2 1 3 34 34 H 1.09004 * 109.46829 * 119.99556 * 2 1 3 35 35 H 0.97000 * 119.99945 * 359.97438 * 9 7 5 36 36 H 1.08997 * 109.47212 * 300.27434 * 10 9 7 37 37 H 1.09009 * 109.47099 * 60.27623 * 10 9 7 38 38 H 1.08997 * 109.47292 * 300.00048 * 11 10 9 39 39 H 1.08998 * 109.47550 * 60.00243 * 11 10 9 40 40 H 0.96993 * 120.00365 * 179.97438 * 15 14 12 41 41 H 1.09000 * 111.00837 * 153.48539 * 20 5 3 42 42 H 1.08998 * 111.00706 * 277.34574 * 20 5 3 43 43 H 1.08999 * 110.36376 * 81.82746 * 21 20 5 44 44 H 1.09000 * 110.36944 * 204.04489 * 21 20 5 45 45 H 1.09002 * 109.47342 * 59.99550 * 27 26 25 46 46 H 1.09000 * 109.47349 * 179.97438 * 27 26 25 47 47 H 1.08996 * 109.47032 * 299.99852 * 27 26 25 48 48 H 1.08995 * 109.46934 * 60.00253 * 28 26 25 49 49 H 1.08998 * 109.46964 * 180.02562 * 28 26 25 50 50 H 1.09002 * 109.46975 * 300.00163 * 28 26 25 51 51 H 1.08996 * 109.46976 * 59.99904 * 29 26 25 52 52 H 1.09001 * 109.47554 * 180.02562 * 29 26 25 53 53 H 1.09003 * 109.47212 * 299.99856 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6145 1.9883 0.8421 5 6 1.6537 2.1356 -1.3236 6 1 1.4834 1.3995 -2.1091 7 6 0.4360 3.0033 -1.1356 8 8 -0.1204 3.0424 -0.0586 9 7 -0.0349 3.7358 -2.1643 10 6 -1.2223 4.5746 -1.9831 11 6 -1.5466 5.2897 -3.2963 12 6 -2.7676 6.1531 -3.1097 13 1 -3.2631 6.1879 -2.1507 14 6 -3.2529 6.8978 -4.1638 15 7 -4.3188 7.6508 -4.0012 16 14 -2.3965 6.8371 -5.8228 17 1 -2.9851 5.7490 -6.6442 18 1 -2.5754 8.1360 -6.5200 19 1 -0.9480 6.5780 -5.6228 20 6 2.9006 3.0017 -1.6440 21 6 4.0482 2.0966 -1.1305 22 7 3.5106 1.4586 0.0850 23 6 4.2433 0.9685 1.1045 24 8 3.6914 0.5471 2.1017 25 8 5.5867 0.9461 1.0182 26 6 6.3112 0.4048 2.1541 27 6 5.8896 -1.0481 2.3826 28 6 7.8144 0.4610 1.8740 29 6 5.9933 1.2304 3.4023 30 1 -0.3634 0.5922 0.8399 31 1 -0.3634 0.4312 -0.9328 32 1 -0.3634 -1.0234 0.0929 33 1 1.8932 -0.5138 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 0.4102 3.7048 -3.0256 36 1 -2.0669 3.9506 -1.6911 37 1 -1.0300 5.3133 -1.2049 38 1 -0.7020 5.9138 -3.5883 39 1 -1.7388 4.5512 -4.0745 40 1 -4.6600 8.1750 -4.7426 41 1 2.9904 3.1758 -2.7163 42 1 2.8724 3.9445 -1.0977 43 1 4.2985 1.3419 -1.8761 44 1 4.9257 2.6966 -0.8896 45 1 6.1161 -1.6364 1.4933 46 1 6.4338 -1.4546 3.2350 47 1 4.8188 -1.0886 2.5819 48 1 8.1151 1.4959 1.7110 49 1 8.3582 0.0543 2.7265 50 1 8.0405 -0.1275 0.9848 51 1 4.9225 1.1899 3.6016 52 1 6.5375 0.8243 4.2549 53 1 6.2937 2.2655 3.2395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496636931.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:31 Heat of formation + Delta-G solvation = -154.878583 kcal Electronic energy + Delta-G solvation = -30946.604758 eV Core-core repulsion = 26816.926460 eV Total energy + Delta-G solvation = -4129.678298 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.11018 -41.15502 -39.33630 -37.53667 -36.62556 -35.25181 -34.82831 -34.23629 -33.05129 -31.69060 -29.16329 -28.36796 -28.27707 -27.22033 -25.62365 -23.81883 -23.11903 -22.65560 -22.01603 -20.83797 -20.29390 -19.18346 -18.94378 -18.20162 -17.51080 -17.28496 -16.76538 -16.54728 -16.26771 -16.10444 -15.89675 -15.59621 -15.30472 -14.93072 -14.89971 -14.70025 -14.43028 -14.37873 -13.94318 -13.70400 -13.35751 -13.31984 -13.29716 -13.06513 -13.01529 -12.92352 -12.85619 -12.78692 -12.60675 -12.48947 -12.30399 -12.22015 -12.14000 -12.10297 -11.84922 -11.73352 -11.62791 -11.49177 -11.37516 -11.06878 -10.77454 -10.76902 -10.02662 -9.79962 -8.28030 -6.35599 0.97337 1.41275 1.44422 1.55527 1.63604 1.72792 2.24616 2.39090 2.84534 3.07220 3.29978 3.42629 3.69972 3.76057 3.80589 3.95209 3.97128 4.14866 4.17394 4.23344 4.32193 4.40661 4.45168 4.50666 4.52561 4.61494 4.64995 4.71840 4.72423 4.76633 4.78111 4.84393 4.88877 4.92651 4.93834 5.03755 5.09032 5.12412 5.15411 5.17663 5.24548 5.28225 5.34631 5.38837 5.44058 5.45891 5.48129 5.67157 6.24000 6.40031 6.63315 6.73560 7.24788 7.28763 7.31403 8.88817 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022936 B = 0.002122 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.506112 B =13192.228699 C =13669.523678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.170 3.830 4 H 0.059 0.941 5 C -0.108 4.108 6 H 0.149 0.851 7 C 0.517 3.483 8 O -0.581 6.581 9 N -0.709 5.709 10 C 0.146 3.854 11 C -0.012 4.012 12 C -0.540 4.540 13 H 0.025 0.975 14 C 0.000 4.000 15 N -0.953 5.953 16 Si 0.961 3.039 17 H -0.265 1.265 18 H -0.290 1.290 19 H -0.231 1.231 20 C -0.117 4.117 21 C 0.104 3.896 22 N -0.605 5.605 23 C 0.662 3.338 24 O -0.592 6.592 25 O -0.362 6.362 26 C 0.124 3.876 27 C -0.178 4.178 28 C -0.133 4.133 29 C -0.181 4.181 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.416 0.584 36 H 0.042 0.958 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.038 0.962 40 H 0.267 0.733 41 H 0.137 0.863 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.064 0.936 46 H 0.089 0.911 47 H 0.058 0.942 48 H 0.068 0.932 49 H 0.101 0.899 50 H 0.072 0.928 51 H 0.056 0.944 52 H 0.091 0.909 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.138 -18.751 3.377 34.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.067 3.933 4 H 0.077 0.923 5 C -0.130 4.130 6 H 0.166 0.834 7 C 0.304 3.696 8 O -0.461 6.461 9 N -0.361 5.361 10 C 0.022 3.978 11 C -0.050 4.050 12 C -0.578 4.578 13 H 0.043 0.957 14 C -0.197 4.197 15 N -0.593 5.593 16 Si 0.783 3.217 17 H -0.190 1.190 18 H -0.216 1.216 19 H -0.154 1.154 20 C -0.155 4.155 21 C -0.017 4.017 22 N -0.345 5.345 23 C 0.418 3.582 24 O -0.483 6.483 25 O -0.276 6.276 26 C 0.088 3.912 27 C -0.235 4.235 28 C -0.190 4.190 29 C -0.238 4.238 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.253 0.747 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.155 0.845 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.109 0.891 45 H 0.083 0.917 46 H 0.108 0.892 47 H 0.077 0.923 48 H 0.088 0.912 49 H 0.120 0.880 50 H 0.091 0.909 51 H 0.075 0.925 52 H 0.110 0.890 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 28.603 -18.769 4.475 34.503 hybrid contribution -0.727 0.565 -0.255 0.955 sum 27.876 -18.204 4.220 33.560 Atomic orbital electron populations 1.21627 0.94732 1.01769 1.01566 1.21780 0.96316 0.94912 1.02957 1.21367 0.77157 0.97154 0.97586 0.92262 1.22394 0.93204 0.98574 0.98813 0.83379 1.20703 0.85408 0.79965 0.83556 1.90714 1.61080 1.66667 1.27597 1.45951 1.30192 1.45308 1.14655 1.20998 0.86111 0.92194 0.98532 1.19647 0.95872 0.95554 0.93896 1.21283 1.12158 1.26628 0.97734 0.95656 1.26149 0.95412 0.94040 1.04060 1.70088 1.25201 1.29982 1.33994 0.85509 0.80982 0.77652 0.77540 1.19001 1.21591 1.15374 1.22929 0.90350 0.97138 1.05123 1.22586 0.97199 0.96393 0.85535 1.47378 1.06328 1.61044 1.19799 1.17648 0.81221 0.77413 0.81931 1.90901 1.72830 1.53311 1.31254 1.86307 1.16699 1.78173 1.46444 1.22424 0.92352 0.93391 0.83013 1.22458 1.03247 0.94506 1.03335 1.21867 0.89135 1.03828 1.04182 1.22477 1.03348 1.00162 0.97828 0.94488 0.92793 0.91326 0.89482 0.92493 0.74663 0.93962 0.94143 0.94215 0.94366 0.92420 0.84530 0.91250 0.88076 0.89087 0.91656 0.89182 0.92306 0.91246 0.88048 0.90865 0.92514 0.89046 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.81 71.98 0.63 -2.71 16 2 C -0.12 -2.71 5.40 30.59 0.17 -2.54 16 3 C 0.17 4.07 2.34 45.28 0.11 4.18 16 4 H 0.06 1.96 6.84 -2.39 -0.02 1.94 16 5 C -0.11 -1.99 2.23 -10.35 -0.02 -2.02 16 6 H 0.15 1.78 7.79 -2.39 -0.02 1.76 16 7 C 0.52 14.60 6.29 87.66 0.55 15.15 16 8 O -0.58 -22.32 14.47 -3.03 -0.04 -22.36 16 9 N -0.71 -19.60 5.53 -463.05 -2.56 -22.16 16 10 C 0.15 5.64 5.61 86.38 0.48 6.13 16 11 C -0.01 -0.51 4.16 29.85 0.12 -0.38 16 12 C -0.54 -30.26 9.66 25.60 0.25 -30.01 16 13 H 0.03 1.61 7.99 -2.91 -0.02 1.58 16 14 C 0.00 0.01 5.47 84.66 0.46 0.47 16 15 N -0.95 -59.01 13.96 21.45 0.30 -58.72 16 16 Si 0.96 41.03 27.47 68.60 1.88 42.91 16 17 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 18 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.23 -8.51 6.54 99.48 0.65 -7.86 16 20 C -0.12 -1.49 6.51 31.99 0.21 -1.29 16 21 C 0.10 1.35 6.90 86.86 0.60 1.95 16 22 N -0.60 -13.04 3.08 -917.49 -2.82 -15.86 16 23 C 0.66 16.77 7.66 129.79 0.99 17.76 16 24 O -0.59 -18.38 11.10 19.79 0.22 -18.17 16 25 O -0.36 -7.53 9.47 -55.45 -0.52 -8.06 16 26 C 0.12 2.06 1.13 -10.79 -0.01 2.05 16 27 C -0.18 -2.91 8.37 71.98 0.60 -2.31 16 28 C -0.13 -1.27 8.85 71.98 0.64 -0.63 16 29 C -0.18 -3.23 8.37 71.98 0.60 -2.63 16 30 H 0.04 1.10 7.84 -2.38 -0.02 1.08 16 31 H 0.05 1.27 7.07 -2.39 -0.02 1.25 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.49 8.06 -2.39 -0.02 1.47 16 34 H 0.06 1.51 6.96 -2.39 -0.02 1.49 16 35 H 0.42 8.15 8.47 -92.71 -0.79 7.37 16 36 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.04 1.56 7.20 -2.39 -0.02 1.54 16 39 H 0.04 1.48 7.57 -2.39 -0.02 1.46 16 40 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.07 1.16 8.04 -2.39 -0.02 1.14 16 43 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.09 1.09 8.10 -2.39 -0.02 1.07 16 45 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.06 1.35 5.88 -2.39 -0.01 1.33 16 48 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.06 1.41 5.88 -2.39 -0.01 1.40 16 52 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 53 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -79.02 413.30 2.88 -76.14 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.04 Total: 23.10 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 6.39 Total: 3.18 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -5.09 Total: -96.74 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -0.35 Total: -48.59 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 1.88 Total: 42.91 kcal Total: -79.02 2.88 -76.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496636931.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.742 kcal (2) G-P(sol) polarization free energy of solvation -79.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds