Wall clock time and date at job start Sat Apr 11 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47114 * 2 1 4 4 H 1.09004 * 109.87070 * 54.13579 * 3 2 1 5 5 C 1.54325 * 109.88537 * 293.12016 * 3 2 1 6 6 H 1.08994 * 110.71985 * 100.02191 * 5 3 2 7 7 C 1.50703 * 110.86692 * 336.82069 * 5 3 2 8 8 O 1.21292 * 120.00379 * 301.14537 * 7 5 3 9 9 N 1.34776 * 119.99804 * 121.15481 * 7 5 3 10 10 C 1.37101 * 120.00187 * 184.57405 * 9 7 5 11 11 H 1.08006 * 119.99654 * 13.82483 * 10 9 7 12 12 C 1.38945 * 120.00137 * 193.82314 * 10 9 7 13 13 N 1.31411 * 120.00246 * 12.17814 * 12 10 9 14 14 Si 1.86799 * 119.99988 * 192.17350 * 12 10 9 15 15 H 1.48503 * 109.46948 * 90.00201 * 14 12 10 16 16 H 1.48498 * 109.47167 * 210.00250 * 14 12 10 17 17 H 1.48499 * 109.47266 * 330.00354 * 14 12 10 18 18 C 1.46499 * 119.99888 * 4.56461 * 9 7 5 19 19 C 1.53002 * 109.46973 * 83.10888 * 18 9 7 20 20 C 1.55154 * 102.94085 * 218.38934 * 5 3 2 21 21 C 1.54912 * 101.62040 * 35.48069 * 20 5 3 22 22 N 1.47025 * 109.88430 * 175.30782 * 3 2 1 23 23 C 1.34780 * 125.64853 * 298.39444 * 22 3 2 24 24 O 1.21513 * 119.99661 * 4.96138 * 23 22 3 25 25 O 1.34630 * 119.99669 * 184.95507 * 23 22 3 26 26 C 1.45207 * 116.99620 * 180.02562 * 25 23 22 27 27 C 1.53001 * 109.47328 * 59.99782 * 26 25 23 28 28 C 1.53002 * 109.47162 * 180.02562 * 26 25 23 29 29 C 1.53001 * 109.47102 * 299.99810 * 26 25 23 30 30 H 1.09003 * 109.46501 * 305.44477 * 1 2 3 31 31 H 1.08997 * 109.47173 * 65.44487 * 1 2 3 32 32 H 1.08993 * 109.46670 * 185.44628 * 1 2 3 33 33 H 1.09005 * 109.47320 * 240.00673 * 2 1 3 34 34 H 1.09002 * 109.47709 * 120.00372 * 2 1 3 35 35 H 0.96992 * 120.00213 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.46970 * 203.10218 * 18 9 7 37 37 H 1.08999 * 109.47643 * 323.10510 * 18 9 7 38 38 H 1.08999 * 109.47268 * 183.76445 * 19 18 9 39 39 H 1.08998 * 109.46660 * 303.76223 * 19 18 9 40 40 H 1.09000 * 109.47310 * 63.76323 * 19 18 9 41 41 H 1.09002 * 111.00509 * 153.57299 * 20 5 3 42 42 H 1.09001 * 111.00349 * 277.38742 * 20 5 3 43 43 H 1.08998 * 110.36504 * 81.84805 * 21 20 5 44 44 H 1.08998 * 110.36646 * 204.17364 * 21 20 5 45 45 H 1.09002 * 109.46571 * 60.00182 * 27 26 25 46 46 H 1.08996 * 109.47273 * 179.97438 * 27 26 25 47 47 H 1.08997 * 109.47308 * 300.00266 * 27 26 25 48 48 H 1.08994 * 109.47191 * 59.99699 * 28 26 25 49 49 H 1.08996 * 109.47289 * 180.02562 * 28 26 25 50 50 H 1.09005 * 109.46761 * 299.99560 * 28 26 25 51 51 H 1.09006 * 109.46794 * 59.99889 * 29 26 25 52 52 H 1.09002 * 109.47427 * 180.02562 * 29 26 25 53 53 H 1.08994 * 109.47322 * 300.00345 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5973 1.9921 0.8308 5 6 1.6777 2.1274 -1.3347 6 1 0.7947 2.7557 -1.2185 7 6 1.4635 1.1056 -2.4215 8 8 2.3564 0.3406 -2.7193 9 7 0.2798 1.0420 -3.0628 10 6 0.0521 0.0535 -3.9851 11 1 0.7160 -0.7966 -4.0407 12 6 -1.0329 0.1452 -4.8482 13 7 -1.6977 1.2742 -4.9504 14 14 -1.5466 -1.3362 -5.8635 15 1 -2.5372 -2.1387 -5.1020 16 1 -2.1562 -0.8762 -7.1371 17 1 -0.3547 -2.1715 -6.1585 18 6 -0.7635 2.0291 -2.7742 19 6 -0.5076 3.2959 -3.5931 20 6 2.9312 2.9918 -1.6331 21 6 4.0685 2.0890 -1.0935 22 7 3.5059 1.4547 0.1131 23 6 4.2179 0.9668 1.1483 24 8 3.6536 0.3829 2.0522 25 8 5.5543 1.1264 1.1806 26 6 6.2565 0.5748 2.3256 27 6 6.0212 -0.9357 2.3890 28 6 7.7547 0.8527 2.1875 29 6 5.7335 1.2267 3.6072 30 1 -0.3632 0.5960 0.8373 31 1 -0.3633 0.4271 -0.9347 32 1 -0.3632 -1.0230 0.0975 33 1 1.8934 -0.5137 -0.8901 34 1 1.8935 -0.5139 0.8899 35 1 -2.4548 1.3383 -5.5532 36 1 -1.7372 1.6163 -3.0383 37 1 -0.7486 2.2738 -1.7121 38 1 -1.2446 4.0544 -3.3290 39 1 0.4930 3.6713 -3.3784 40 1 -0.5888 3.0647 -4.6552 41 1 3.0424 3.1620 -2.7040 42 1 2.8921 3.9368 -1.0913 43 1 4.3340 1.3317 -1.8311 44 1 4.9401 2.6904 -0.8353 45 1 6.3938 -1.4000 1.4760 46 1 6.5487 -1.3498 3.2483 47 1 4.9538 -1.1333 2.4877 48 1 7.9220 1.9288 2.1425 49 1 8.2819 0.4382 3.0467 50 1 8.1277 0.3885 1.2744 51 1 4.6661 1.0291 3.7058 52 1 6.2609 0.8129 4.4667 53 1 5.9011 2.3027 3.5620 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496866060.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:42 Heat of formation + Delta-G solvation = -110.340449 kcal Electronic energy + Delta-G solvation = -32990.032818 eV Core-core repulsion = 28862.285838 eV Total energy + Delta-G solvation = -4127.746980 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.15376 -41.15647 -39.06062 -37.50668 -36.73858 -35.23177 -34.27449 -33.71681 -32.47205 -31.10474 -29.07359 -28.34968 -28.26689 -27.19326 -25.50887 -23.96475 -23.62097 -23.13627 -22.07823 -20.30820 -19.83646 -18.92310 -18.67060 -18.22822 -17.52211 -17.23028 -16.61333 -16.59679 -16.08729 -15.91075 -15.56185 -15.20719 -14.91715 -14.55499 -14.46677 -14.43470 -14.22006 -13.91489 -13.73833 -13.45621 -13.34078 -13.29215 -13.09707 -12.90600 -12.87874 -12.85090 -12.84020 -12.66735 -12.53628 -12.47821 -12.40157 -12.28351 -12.20074 -12.04692 -11.94795 -11.85689 -11.54445 -11.54171 -11.34987 -10.97707 -10.72394 -10.04213 -9.72701 -9.52526 -8.17437 -5.80634 1.09128 1.38172 1.44033 1.53248 1.77656 2.07630 2.30308 2.89360 3.08610 3.15081 3.50155 3.66300 3.78124 3.81594 3.85701 3.97023 4.12147 4.18020 4.25968 4.34346 4.44442 4.50047 4.53033 4.62357 4.63619 4.69884 4.74090 4.75094 4.77531 4.85521 4.88419 4.89431 4.95993 4.98886 5.01537 5.10177 5.12046 5.16966 5.21385 5.26658 5.30163 5.34396 5.37548 5.45195 5.48899 5.52629 5.67692 6.02166 6.19051 6.49228 6.65050 7.28768 7.29655 7.62060 8.18098 8.74501 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.003141 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.686994 B = 8911.043165 C = 9206.862714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.182 3.818 4 H 0.098 0.902 5 C -0.112 4.112 6 H 0.124 0.876 7 C 0.461 3.539 8 O -0.625 6.625 9 N -0.448 5.448 10 C -0.328 4.328 11 H 0.066 0.934 12 C 0.001 3.999 13 N -0.877 5.877 14 Si 0.977 3.023 15 H -0.273 1.273 16 H -0.275 1.275 17 H -0.284 1.284 18 C 0.117 3.883 19 C -0.139 4.139 20 C -0.105 4.105 21 C 0.110 3.890 22 N -0.596 5.596 23 C 0.664 3.336 24 O -0.588 6.588 25 O -0.368 6.368 26 C 0.121 3.879 27 C -0.180 4.180 28 C -0.133 4.133 29 C -0.175 4.175 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.269 0.731 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.034 0.966 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.052 0.948 44 H 0.099 0.901 45 H 0.052 0.948 46 H 0.095 0.905 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.105 0.895 50 H 0.063 0.937 51 H 0.060 0.940 52 H 0.093 0.907 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.840 6.592 13.253 17.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.080 3.920 4 H 0.116 0.884 5 C -0.134 4.134 6 H 0.142 0.858 7 C 0.251 3.749 8 O -0.513 6.513 9 N -0.166 5.166 10 C -0.456 4.456 11 H 0.084 0.916 12 C -0.200 4.200 13 N -0.517 5.517 14 Si 0.802 3.198 15 H -0.198 1.198 16 H -0.200 1.200 17 H -0.210 1.210 18 C -0.005 4.005 19 C -0.197 4.197 20 C -0.143 4.143 21 C -0.012 4.012 22 N -0.336 5.336 23 C 0.420 3.580 24 O -0.480 6.480 25 O -0.283 6.283 26 C 0.085 3.915 27 C -0.238 4.238 28 C -0.190 4.190 29 C -0.233 4.233 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.135 0.865 43 H 0.070 0.930 44 H 0.117 0.883 45 H 0.071 0.929 46 H 0.114 0.886 47 H 0.076 0.924 48 H 0.092 0.908 49 H 0.124 0.876 50 H 0.082 0.918 51 H 0.079 0.921 52 H 0.111 0.889 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.020 6.074 13.352 17.764 hybrid contribution -0.496 -1.236 -0.973 1.649 sum 9.524 4.838 12.379 16.351 Atomic orbital electron populations 1.21807 0.94075 1.02037 1.02722 1.21987 0.97287 0.96934 1.01863 1.21407 0.77588 0.96285 0.96745 0.88401 1.22456 1.01749 0.96758 0.92459 0.85831 1.20140 0.81963 0.86969 0.85849 1.90472 1.43588 1.47008 1.70237 1.43949 1.11813 1.25989 1.34836 1.19528 1.11702 1.00777 1.13582 0.91560 1.25737 0.96871 0.99662 0.97757 1.70097 1.20843 1.23652 1.37104 0.85173 0.78005 0.78651 0.77925 1.19817 1.19993 1.20950 1.21639 0.93600 0.89213 0.96093 1.22037 0.99034 0.96029 1.02563 1.22690 0.91141 0.97925 1.02527 1.22361 0.97554 0.95766 0.85528 1.47286 1.06934 1.61113 1.18246 1.17566 0.81124 0.77888 0.81414 1.90845 1.71634 1.46700 1.38807 1.86319 1.18058 1.75020 1.48875 1.22468 0.92750 0.93260 0.83006 1.22474 1.03515 0.94630 1.03140 1.21870 0.89407 1.03602 1.04141 1.22443 1.03060 1.01111 0.96649 0.90714 0.92297 0.93280 0.93112 0.92113 0.92039 0.89169 0.92156 0.91833 0.94700 0.92341 0.90075 0.86466 0.92962 0.88321 0.92900 0.88600 0.92383 0.90846 0.87624 0.91805 0.92098 0.88865 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 9.56 71.98 0.69 -4.55 16 2 C -0.14 -5.55 5.04 30.60 0.15 -5.40 16 3 C 0.18 6.16 2.80 45.34 0.13 6.28 16 4 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16 5 C -0.11 -3.79 2.21 -10.35 -0.02 -3.82 16 6 H 0.12 3.63 5.38 -2.39 -0.01 3.62 16 7 C 0.46 20.84 4.08 87.66 0.36 21.20 16 8 O -0.63 -33.43 13.30 -3.07 -0.04 -33.47 16 9 N -0.45 -21.35 1.86 -635.53 -1.18 -22.53 16 10 C -0.33 -17.78 9.44 84.04 0.79 -16.98 16 11 H 0.07 3.97 7.31 -2.91 -0.02 3.95 16 12 C 0.00 0.05 5.16 84.93 0.44 0.49 16 13 N -0.88 -42.70 8.07 21.66 0.17 -42.52 16 14 Si 0.98 41.85 29.57 68.60 2.03 43.88 16 15 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 18 C 0.12 4.76 4.05 86.38 0.35 5.11 16 19 C -0.14 -5.20 9.55 71.98 0.69 -4.52 16 20 C -0.10 -2.94 6.53 31.99 0.21 -2.73 16 21 C 0.11 3.42 6.47 86.85 0.56 3.98 16 22 N -0.60 -20.19 3.07 -918.09 -2.82 -23.01 16 23 C 0.66 22.85 7.74 129.79 1.01 23.85 16 24 O -0.59 -21.89 10.67 19.80 0.21 -21.68 16 25 O -0.37 -10.98 9.39 -55.39 -0.52 -11.50 16 26 C 0.12 2.79 1.13 -10.79 -0.01 2.77 16 27 C -0.18 -4.34 8.37 71.98 0.60 -3.74 16 28 C -0.13 -2.07 8.85 71.98 0.64 -1.43 16 29 C -0.18 -3.66 8.37 71.98 0.60 -3.06 16 30 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.06 2.27 4.00 -2.39 -0.01 2.26 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 33 H 0.05 2.42 5.50 -2.38 -0.01 2.41 16 34 H 0.06 2.45 6.56 -2.39 -0.02 2.43 16 35 H 0.27 12.46 8.31 -92.71 -0.77 11.69 16 36 H 0.09 4.11 5.74 -2.39 -0.01 4.09 16 37 H 0.06 2.06 5.41 -2.39 -0.01 2.05 16 38 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.03 1.20 7.72 -2.39 -0.02 1.18 16 40 H 0.06 2.61 6.26 -2.39 -0.01 2.60 16 41 H 0.08 2.42 8.03 -2.39 -0.02 2.40 16 42 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.05 1.99 7.06 -2.39 -0.02 1.97 16 44 H 0.10 2.50 7.99 -2.39 -0.02 2.49 16 45 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.06 1.78 5.88 -2.39 -0.01 1.77 16 48 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 49 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 51 H 0.06 1.65 5.88 -2.38 -0.01 1.63 16 52 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 53 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -66.19 391.34 5.94 -60.25 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: 0.90 Total: 33.12 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 7.18 Total: 17.46 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -3.82 Total: -88.06 kcal Atomic # 8 Polarization: -66.30 SS G_CDS: -0.35 Total: -66.64 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -66.19 5.94 -60.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496866060.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.092 kcal (2) G-P(sol) polarization free energy of solvation -66.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds