Wall clock time and date at job start Sat Apr 11 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46637 * 2 1 4 4 C 1.52996 * 109.47017 * 240.00647 * 2 1 3 5 5 O 1.45197 * 109.47522 * 120.00062 * 2 1 3 6 6 C 1.34645 * 116.99780 * 59.02382 * 5 2 1 7 7 O 1.21514 * 119.99710 * 4.26081 * 6 5 2 8 8 N 1.34770 * 120.00056 * 184.25987 * 6 5 2 9 9 C 1.46498 * 120.00156 * 174.86180 * 8 6 5 10 10 C 1.50699 * 115.54847 * 59.68329 * 9 8 6 11 11 O 1.21279 * 119.99799 * 215.77515 * 10 9 8 12 12 N 1.34776 * 119.99921 * 35.77010 * 10 9 8 13 13 C 1.46504 * 119.99854 * 185.01434 * 12 10 9 14 14 C 1.52999 * 109.47116 * 184.63372 * 13 12 10 15 15 C 1.52998 * 109.47007 * 303.17712 * 14 13 12 16 16 C 1.52999 * 109.46895 * 63.18124 * 14 13 12 17 17 C 1.52996 * 109.47020 * 183.17864 * 14 13 12 18 18 C 1.50699 * 109.47347 * 179.97438 * 17 14 13 19 19 H 1.08006 * 119.99576 * 0.02562 * 18 17 14 20 20 C 1.37876 * 120.00523 * 179.97438 * 18 17 14 21 21 N 1.31516 * 119.99765 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00307 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47314 * 90.00160 * 22 20 18 24 24 H 1.48499 * 109.47405 * 210.00553 * 22 20 18 25 25 H 1.48510 * 109.47051 * 330.00220 * 22 20 18 26 26 C 1.53006 * 117.49689 * 274.01378 * 9 8 6 27 27 C 1.52998 * 117.49826 * 205.35208 * 9 8 6 28 28 H 1.08997 * 109.46887 * 299.99456 * 1 2 3 29 29 H 1.08996 * 109.47671 * 60.00061 * 1 2 3 30 30 H 1.09004 * 109.46660 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46588 * 180.02562 * 3 2 1 32 32 H 1.08992 * 109.47534 * 300.00388 * 3 2 1 33 33 H 1.08997 * 109.47038 * 60.00636 * 3 2 1 34 34 H 1.09005 * 109.47140 * 306.49444 * 4 2 1 35 35 H 1.08998 * 109.47634 * 66.49804 * 4 2 1 36 36 H 1.09003 * 109.47358 * 186.50001 * 4 2 1 37 37 H 0.97007 * 119.99654 * 355.14380 * 8 6 5 38 38 H 0.96999 * 120.00445 * 5.01910 * 12 10 9 39 39 H 1.09004 * 109.46786 * 304.63485 * 13 12 10 40 40 H 1.08996 * 109.46975 * 64.63228 * 13 12 10 41 41 H 1.09006 * 109.46923 * 65.00127 * 15 14 13 42 42 H 1.08997 * 109.46865 * 184.99177 * 15 14 13 43 43 H 1.08998 * 109.47470 * 304.99792 * 15 14 13 44 44 H 1.08995 * 109.47610 * 60.00343 * 16 14 13 45 45 H 1.09010 * 109.46857 * 180.02562 * 16 14 13 46 46 H 1.08998 * 109.47243 * 299.99660 * 16 14 13 47 47 H 1.09005 * 109.47326 * 300.00175 * 17 14 13 48 48 H 1.09005 * 109.46959 * 60.00118 * 17 14 13 49 49 H 0.96996 * 120.00184 * 179.97438 * 21 20 18 50 50 H 1.08994 * 117.49633 * 359.97438 * 26 9 8 51 51 H 1.09003 * 117.49435 * 145.01767 * 26 9 8 52 52 H 1.09003 * 117.50140 * 214.97606 * 27 9 8 53 53 H 1.09003 * 117.50012 * 0.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6357 -1.9663 1.3485 7 8 0.9853 -2.5222 0.4857 8 7 1.9784 -2.6329 2.4686 9 6 1.4732 -3.9887 2.6977 10 6 1.8486 -5.0074 1.6526 11 8 1.0637 -5.8799 1.3467 12 7 3.0566 -4.9489 1.0577 13 6 3.3805 -5.8698 -0.0347 14 6 4.8394 -5.6733 -0.4517 15 6 5.0646 -4.2123 -0.8464 16 6 5.7571 -6.0328 0.7186 17 6 5.1553 -6.5782 -1.6442 18 6 6.5921 -6.3842 -2.0554 19 1 7.2175 -5.6856 -1.5194 20 6 7.1085 -7.0993 -3.1150 21 7 6.3471 -7.9504 -3.7674 22 14 8.8896 -6.8593 -3.6242 23 1 9.7498 -7.8155 -2.8819 24 1 9.0245 -7.1018 -5.0831 25 1 9.3107 -5.4697 -3.3124 26 6 0.1012 -4.1288 3.3602 27 6 1.3697 -4.4686 4.1468 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.5848 -1.7097 -1.3094 35 1 1.7748 -0.1445 -2.1354 36 1 3.1238 -0.8230 -1.1931 37 1 2.5564 -2.2132 3.1250 38 1 3.7115 -4.2971 1.3528 39 1 3.2335 -6.8967 0.3002 40 1 2.7293 -5.6681 -0.8851 41 1 4.9258 -3.5746 0.0267 42 1 6.0787 -4.0911 -1.2272 43 1 4.3499 -3.9305 -1.6196 44 1 5.5968 -7.0736 0.9997 45 1 6.7966 -5.8923 0.4216 46 1 5.5321 -5.3881 1.5681 47 1 4.9948 -7.6191 -1.3630 48 1 4.5014 -6.3221 -2.4779 49 1 6.7102 -8.4532 -4.5131 50 1 -0.4253 -3.2122 3.6259 51 1 -0.5298 -4.9581 3.0402 52 1 1.5726 -5.5212 4.3442 53 1 1.6771 -3.7752 4.9298 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497113385.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:05 Heat of formation + Delta-G solvation = -130.883286 kcal Electronic energy + Delta-G solvation = -31949.919162 eV Core-core repulsion = 27821.281378 eV Total energy + Delta-G solvation = -4128.637784 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.06723 -41.07956 -39.22497 -38.33272 -37.26430 -35.38405 -35.19705 -34.02612 -33.43880 -29.22443 -28.37597 -28.28280 -28.11722 -28.01484 -25.69204 -24.54879 -23.73756 -23.29142 -21.20690 -20.97053 -19.86654 -19.26879 -18.79071 -18.39736 -17.39538 -17.23693 -16.85549 -16.58203 -16.45257 -16.07423 -15.65246 -15.56688 -15.25163 -15.04732 -14.81953 -14.61350 -14.44506 -14.13824 -13.98618 -13.81807 -13.34134 -13.27095 -12.90586 -12.89171 -12.83281 -12.75370 -12.65694 -12.64525 -12.52900 -12.39408 -12.37791 -12.26301 -12.13105 -12.01766 -11.99936 -11.59863 -11.39272 -11.26244 -11.12735 -11.01350 -10.90743 -10.52976 -10.20510 -10.11725 -8.15097 -6.23642 0.91768 1.41610 1.42578 1.42944 1.52941 1.69813 2.09362 2.43800 2.73577 3.00695 3.19144 3.59162 3.62614 3.75482 3.78794 3.80402 3.91651 3.94848 4.01426 4.15459 4.35231 4.55529 4.60720 4.60959 4.64580 4.65782 4.70596 4.76838 4.78443 4.85650 4.88668 4.89296 4.89762 5.03510 5.05743 5.07166 5.12388 5.21059 5.28152 5.31467 5.35094 5.41968 5.43594 5.47944 5.53518 5.55847 5.75036 5.86987 6.27089 6.32206 6.50214 6.90870 7.15566 7.33749 7.44212 8.97678 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011167 B = 0.003273 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.888336 B = 8551.794472 C =10200.410599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.130 3.870 3 C -0.134 4.134 4 C -0.181 4.181 5 O -0.360 6.360 6 C 0.645 3.355 7 O -0.582 6.582 8 N -0.661 5.661 9 C 0.061 3.939 10 C 0.545 3.455 11 O -0.581 6.581 12 N -0.700 5.700 13 C 0.144 3.856 14 C -0.063 4.063 15 C -0.116 4.116 16 C -0.118 4.118 17 C 0.042 3.958 18 C -0.514 4.514 19 H 0.074 0.926 20 C -0.005 4.005 21 N -0.939 5.939 22 Si 0.960 3.040 23 H -0.274 1.274 24 H -0.290 1.290 25 H -0.259 1.259 26 C -0.148 4.148 27 C -0.104 4.104 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.428 0.572 38 H 0.408 0.592 39 H 0.051 0.949 40 H 0.032 0.968 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.030 0.970 44 H 0.039 0.961 45 H 0.059 0.941 46 H 0.067 0.933 47 H -0.013 1.013 48 H -0.019 1.019 49 H 0.260 0.740 50 H 0.124 0.876 51 H 0.095 0.905 52 H 0.116 0.884 53 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.584 20.547 18.811 29.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.094 3.906 3 C -0.191 4.191 4 C -0.239 4.239 5 O -0.274 6.274 6 C 0.399 3.601 7 O -0.470 6.470 8 N -0.324 5.324 9 C -0.029 4.029 10 C 0.331 3.669 11 O -0.460 6.460 12 N -0.351 5.351 13 C 0.020 3.980 14 C -0.064 4.064 15 C -0.173 4.173 16 C -0.176 4.176 17 C 0.005 3.995 18 C -0.552 4.552 19 H 0.092 0.908 20 C -0.202 4.202 21 N -0.580 5.580 22 Si 0.786 3.214 23 H -0.200 1.200 24 H -0.216 1.216 25 H -0.183 1.183 26 C -0.187 4.187 27 C -0.141 4.141 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.268 0.732 38 H 0.245 0.755 39 H 0.070 0.930 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.005 0.995 48 H -0.001 1.001 49 H 0.069 0.931 50 H 0.142 0.858 51 H 0.113 0.887 52 H 0.134 0.866 53 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.434 19.647 17.935 28.225 hybrid contribution 1.042 -0.317 -1.039 1.505 sum -8.392 19.330 16.896 27.010 Atomic orbital electron populations 1.22446 0.93885 1.03334 1.03850 1.22353 0.94519 0.92651 0.81062 1.21874 1.02498 0.90220 1.04497 1.22484 1.01460 1.01959 0.97976 1.86298 1.70720 1.23051 1.47362 1.18332 0.78180 0.81004 0.82624 1.91011 1.43771 1.69445 1.42794 1.43667 1.53857 1.13310 1.21583 1.20369 1.04994 0.81039 0.96515 1.20027 0.81071 0.84366 0.81481 1.90676 1.51677 1.38813 1.64861 1.45772 1.15814 1.37749 1.35717 1.21213 0.96071 0.92617 0.88138 1.20704 0.91765 0.97010 0.96901 1.21636 1.01802 0.94047 0.99849 1.21669 0.99644 1.00382 0.95870 1.18941 0.95868 0.93081 0.91647 1.21563 0.96724 1.22744 1.14167 0.90802 1.25972 1.02241 0.95156 0.96818 1.70133 1.38035 1.27586 1.22261 0.85511 0.79806 0.79127 0.77004 1.19968 1.21571 1.18253 1.23468 0.90232 1.04747 1.00260 1.23660 0.97789 1.04555 0.88136 0.91002 0.89435 0.92634 0.91227 0.88340 0.90377 0.92731 0.89486 0.92438 0.73186 0.75505 0.93016 0.94959 0.92086 0.92058 0.95104 0.94145 0.92239 0.91443 0.99468 1.00063 0.93139 0.85776 0.88653 0.86604 0.82723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.35 8.36 71.98 0.60 -2.75 16 2 C 0.13 2.52 1.13 -10.79 -0.01 2.50 16 3 C -0.13 -1.63 8.85 71.98 0.64 -0.99 16 4 C -0.18 -4.25 8.28 71.98 0.60 -3.65 16 5 O -0.36 -7.62 9.94 -55.55 -0.55 -8.18 16 6 C 0.64 15.93 7.91 129.79 1.03 16.95 16 7 O -0.58 -19.29 11.18 19.80 0.22 -19.07 16 8 N -0.66 -11.78 5.17 -553.76 -2.86 -14.64 16 9 C 0.06 1.31 2.32 2.86 0.01 1.31 16 10 C 0.54 17.67 6.37 87.66 0.56 18.22 16 11 O -0.58 -24.09 16.24 -3.03 -0.05 -24.14 16 12 N -0.70 -22.18 4.92 -463.06 -2.28 -24.46 16 13 C 0.14 5.71 4.59 86.38 0.40 6.10 16 14 C -0.06 -2.55 0.54 -52.18 -0.03 -2.57 16 15 C -0.12 -4.24 8.02 71.98 0.58 -3.66 16 16 C -0.12 -4.12 8.08 71.98 0.58 -3.53 16 17 C 0.04 2.23 4.04 29.85 0.12 2.35 16 18 C -0.51 -28.04 7.59 25.60 0.19 -27.85 16 19 H 0.07 3.75 5.69 -2.91 -0.02 3.73 16 20 C -0.01 -0.29 5.46 84.65 0.46 0.18 16 21 N -0.94 -58.05 13.29 21.45 0.28 -57.76 16 22 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 25 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 26 C -0.15 -2.70 9.97 30.62 0.31 -2.40 16 27 C -0.10 -1.26 10.16 30.62 0.31 -0.95 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.43 5.96 -2.38 -0.01 1.42 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 1.69 6.01 -2.38 -0.01 1.68 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.43 4.28 8.94 -92.70 -0.83 3.45 16 38 H 0.41 10.74 6.00 -92.71 -0.56 10.19 16 39 H 0.05 2.19 8.11 -2.39 -0.02 2.17 16 40 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.06 1.77 6.75 -2.38 -0.02 1.76 16 42 H 0.06 2.35 6.47 -2.39 -0.02 2.34 16 43 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.06 2.17 6.62 -2.38 -0.02 2.15 16 46 H 0.07 1.81 7.16 -2.39 -0.02 1.79 16 47 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 48 H -0.02 -1.13 8.14 -2.38 -0.02 -1.15 16 49 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 50 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 51 H 0.09 2.20 7.67 -2.39 -0.02 2.18 16 52 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 53 H 0.16 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -78.98 419.07 2.65 -76.33 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: -0.47 Total: 26.69 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 6.33 Total: -0.72 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -4.85 Total: -96.86 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -0.38 Total: -51.38 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -78.98 2.65 -76.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497113385.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.557 kcal (2) G-P(sol) polarization free energy of solvation -78.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds