Wall clock time and date at job start Sat Apr 11 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47744 * 2 1 4 4 C 1.53001 * 109.47165 * 239.99826 * 2 1 3 5 5 O 1.45209 * 109.47276 * 119.99943 * 2 1 3 6 6 C 1.34636 * 116.99514 * 59.99799 * 5 2 1 7 7 O 1.21509 * 120.00675 * 359.97438 * 6 5 2 8 8 N 1.34778 * 119.99556 * 180.02562 * 6 5 2 9 9 C 1.46500 * 119.99850 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47150 * 179.97438 * 9 8 6 11 11 C 1.53346 * 109.41904 * 295.13157 * 10 9 8 12 12 C 1.53195 * 109.14901 * 178.67276 * 11 10 9 13 13 N 1.46919 * 108.89273 * 54.57640 * 12 11 10 14 14 C 1.34778 * 120.63255 * 126.34238 * 13 12 11 15 15 O 1.21279 * 120.00169 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00023 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.46931 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.47067 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99699 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99846 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00051 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99888 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46775 * 60.00383 * 22 20 18 24 24 H 1.48500 * 109.47178 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46977 * 300.00371 * 22 20 18 26 26 C 1.46933 * 118.74003 * 306.32349 * 13 12 11 27 27 C 1.53034 * 109.46014 * 175.00023 * 10 9 8 28 28 H 1.09007 * 109.46853 * 300.00619 * 1 2 3 29 29 H 1.09001 * 109.47339 * 59.99878 * 1 2 3 30 30 H 1.08996 * 109.47849 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47499 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46461 * 300.00045 * 3 2 1 33 33 H 1.08997 * 109.47332 * 59.99745 * 3 2 1 34 34 H 1.09008 * 109.46851 * 300.00322 * 4 2 1 35 35 H 1.09003 * 109.47253 * 59.99825 * 4 2 1 36 36 H 1.08999 * 109.47279 * 180.02562 * 4 2 1 37 37 H 0.96999 * 120.00446 * 359.97438 * 8 6 5 38 38 H 1.09001 * 109.47353 * 60.00073 * 9 8 6 39 39 H 1.08997 * 109.47478 * 299.99831 * 9 8 6 40 40 H 1.09001 * 109.45799 * 55.03185 * 10 9 8 41 41 H 1.08997 * 109.68637 * 58.70485 * 11 10 9 42 42 H 1.09002 * 109.47277 * 298.50741 * 11 10 9 43 43 H 1.09002 * 109.58720 * 294.71670 * 12 11 10 44 44 H 1.08996 * 109.58651 * 174.43567 * 12 11 10 45 45 H 1.09001 * 109.47488 * 299.99559 * 16 14 13 46 46 H 1.09001 * 109.47269 * 59.99982 * 16 14 13 47 47 H 1.08996 * 109.47074 * 299.99864 * 17 16 14 48 48 H 1.09001 * 109.47188 * 59.99897 * 17 16 14 49 49 H 0.97008 * 119.99666 * 180.02562 * 21 20 18 50 50 H 1.08994 * 109.58580 * 173.39910 * 26 13 12 51 51 H 1.09006 * 109.57831 * 293.67403 * 26 13 12 52 52 H 1.08994 * 109.50232 * 61.43679 * 27 10 9 53 53 H 1.09007 * 109.52628 * 301.35340 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3383 7 8 0.9507 -2.5095 0.5041 8 7 2.0671 -2.6654 2.4172 9 6 1.6730 -4.0665 2.5837 10 6 2.2732 -4.6146 3.8800 11 6 3.8024 -4.6304 3.7670 12 6 4.3980 -5.1488 5.0798 13 7 3.8007 -6.4547 5.3903 14 6 4.5810 -7.5269 5.6312 15 8 5.7884 -7.4193 5.5923 16 6 3.9532 -8.8595 5.9488 17 6 5.0520 -9.8990 6.1791 18 6 4.4242 -11.2316 6.4974 19 1 3.3490 -11.3275 6.5315 20 6 5.2224 -12.3284 6.7439 21 7 6.5317 -12.2116 6.7018 22 14 4.4442 -13.9803 7.1377 23 1 3.5884 -14.4076 6.0018 24 1 5.5107 -14.9892 7.3613 25 1 3.6150 -13.8572 8.3635 26 6 2.3365 -6.5695 5.4336 27 6 1.7610 -6.0370 4.1176 28 1 -0.3633 0.5140 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6765 -1.7490 -1.2492 35 1 1.6766 -0.2075 -2.1393 36 1 3.1299 -0.7217 -1.2490 37 1 2.6268 -2.2366 3.0834 38 1 2.0394 -4.6499 1.7390 39 1 0.5861 -4.1354 2.6286 40 1 1.9780 -3.9783 4.7143 41 1 4.1669 -3.6212 3.5756 42 1 4.0996 -5.2863 2.9487 43 1 4.1781 -4.4460 5.8835 44 1 5.4774 -5.2566 4.9739 45 1 3.3446 -8.7693 6.8486 46 1 3.3248 -9.1731 5.1151 47 1 5.6609 -9.9894 5.2796 48 1 5.6800 -9.5852 7.0129 49 1 7.0933 -12.9834 6.8749 50 1 2.0556 -7.6152 5.5587 51 1 1.9488 -5.9846 6.2677 52 1 2.0772 -6.6795 3.2959 53 1 0.6725 -6.0276 4.1740 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497196055.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:24 Heat of formation + Delta-G solvation = -165.962861 kcal Electronic energy + Delta-G solvation = -29815.010289 eV Core-core repulsion = 25684.851341 eV Total energy + Delta-G solvation = -4130.158948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.81114 -41.17160 -39.21890 -38.09315 -36.15196 -35.59735 -35.04062 -33.62940 -33.00932 -31.88498 -28.77027 -28.34826 -28.27773 -27.53138 -24.82942 -24.48727 -23.24079 -22.78179 -21.50161 -20.95591 -19.81646 -19.18737 -18.75702 -17.67035 -17.58880 -17.28207 -16.73671 -16.65116 -16.41310 -16.24277 -15.73914 -15.59874 -15.23216 -15.02445 -14.82923 -14.48325 -14.41188 -14.19262 -14.14921 -13.93286 -13.51207 -13.32744 -13.22123 -13.14698 -12.98717 -12.89169 -12.84368 -12.77027 -12.50116 -12.44063 -12.31352 -12.18888 -11.96781 -11.91315 -11.70725 -11.51048 -11.42785 -11.36724 -11.30998 -11.10016 -10.62987 -10.55394 -10.18560 -9.59720 -8.17058 -6.31450 1.20094 1.42676 1.47330 1.54996 1.70800 1.78595 2.10227 2.44183 3.15780 3.18740 3.60809 3.66649 3.76858 3.81753 3.82842 3.92296 3.96667 4.15889 4.33679 4.36254 4.47739 4.50013 4.52015 4.56798 4.60576 4.63026 4.66268 4.78209 4.78393 4.80661 4.86286 4.89632 4.90050 4.91480 5.00188 5.02198 5.10422 5.14928 5.18931 5.25225 5.29497 5.37308 5.46641 5.48972 5.61197 5.62773 5.70181 5.85606 6.17912 6.42237 6.43910 6.86876 7.29700 7.36511 7.39021 8.95374 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.028617 B = 0.001649 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.209614 B =16978.453674 C =17267.088774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.125 3.875 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.370 6.370 6 C 0.643 3.357 7 O -0.596 6.596 8 N -0.699 5.699 9 C 0.148 3.852 10 C -0.085 4.085 11 C -0.121 4.121 12 C 0.106 3.894 13 N -0.613 5.613 14 C 0.508 3.492 15 O -0.594 6.594 16 C -0.115 4.115 17 C 0.042 3.958 18 C -0.543 4.543 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.938 5.938 22 Si 0.975 3.025 23 H -0.262 1.262 24 H -0.289 1.289 25 H -0.261 1.261 26 C 0.100 3.900 27 C -0.123 4.123 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.416 0.584 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.059 0.941 45 H 0.104 0.896 46 H 0.101 0.899 47 H -0.021 1.021 48 H -0.019 1.019 49 H 0.262 0.738 50 H 0.093 0.907 51 H 0.095 0.905 52 H 0.059 0.941 53 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.971 29.502 -11.070 35.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.089 3.911 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.284 6.284 6 C 0.396 3.604 7 O -0.487 6.487 8 N -0.359 5.359 9 C 0.026 3.974 10 C -0.104 4.104 11 C -0.160 4.160 12 C -0.016 4.016 13 N -0.347 5.347 14 C 0.298 3.702 15 O -0.474 6.474 16 C -0.155 4.155 17 C 0.004 3.996 18 C -0.581 4.581 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.578 5.578 22 Si 0.798 3.202 23 H -0.187 1.187 24 H -0.214 1.214 25 H -0.186 1.186 26 C -0.021 4.021 27 C -0.162 4.162 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.254 0.746 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.125 0.875 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.122 0.878 46 H 0.119 0.881 47 H -0.002 1.002 48 H -0.001 1.001 49 H 0.071 0.929 50 H 0.112 0.888 51 H 0.113 0.887 52 H 0.078 0.922 53 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.545 29.286 -11.529 35.558 hybrid contribution 0.769 -0.997 0.297 1.294 sum -15.776 28.289 -11.232 34.283 Atomic orbital electron populations 1.22464 0.93857 1.03685 1.03604 1.22378 0.94640 0.92629 0.81433 1.21886 1.02369 0.90755 1.04342 1.22482 1.01525 1.02231 0.97574 1.86312 1.71610 1.23223 1.47294 1.18325 0.78814 0.80812 0.82461 1.90903 1.42392 1.71049 1.44348 1.44743 1.55244 1.12749 1.23204 1.21373 1.00164 0.78133 0.97771 1.21382 0.94121 0.97629 0.97272 1.21996 0.95684 1.02009 0.96286 1.21640 0.98277 0.83741 0.97966 1.48287 1.07972 1.08831 1.69567 1.21386 0.86668 0.87034 0.75073 1.90635 1.17194 1.85857 1.53762 1.21625 0.99841 0.90400 1.03637 1.18697 0.93278 0.93159 0.94439 1.21684 0.93986 0.94632 1.47800 0.90473 1.26152 0.95211 1.03960 0.95135 1.70184 1.05294 1.31870 1.50444 0.85365 0.77862 0.77550 0.79405 1.18699 1.21431 1.18573 1.22044 0.77177 1.03903 0.98993 1.21884 1.02370 0.94863 0.97068 0.91771 0.89307 0.91920 0.91359 0.88138 0.91029 0.92027 0.89236 0.92184 0.74638 0.92518 0.90386 0.87549 0.88915 0.93193 0.89305 0.92203 0.87834 0.88053 1.00249 1.00073 0.92912 0.88838 0.88697 0.92204 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 8.37 71.98 0.60 -1.85 16 2 C 0.13 1.77 1.13 -10.80 -0.01 1.76 16 3 C -0.14 -1.13 8.85 71.98 0.64 -0.49 16 4 C -0.18 -2.70 8.37 71.98 0.60 -2.09 16 5 O -0.37 -6.47 9.94 -55.45 -0.55 -7.02 16 6 C 0.64 12.55 8.06 129.79 1.05 13.59 16 7 O -0.60 -14.87 11.88 19.81 0.24 -14.63 16 8 N -0.70 -9.63 5.28 -590.85 -3.12 -12.75 16 9 C 0.15 1.95 5.07 86.38 0.44 2.38 16 10 C -0.09 -0.94 2.19 -10.66 -0.02 -0.97 16 11 C -0.12 -1.92 5.27 30.78 0.16 -1.76 16 12 C 0.11 2.36 6.42 86.36 0.55 2.91 16 13 N -0.61 -16.39 2.97 -818.91 -2.43 -18.82 16 14 C 0.51 20.02 7.70 87.66 0.67 20.70 16 15 O -0.59 -29.86 15.39 -3.03 -0.05 -29.90 16 16 C -0.12 -4.67 3.99 29.85 0.12 -4.55 16 17 C 0.04 2.37 4.26 29.85 0.13 2.49 16 18 C -0.54 -31.02 9.11 25.60 0.23 -30.78 16 19 H 0.08 3.97 7.74 -2.91 -0.02 3.94 16 20 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 21 N -0.94 -59.99 13.29 21.45 0.28 -59.70 16 22 Si 0.97 44.31 29.54 68.60 2.03 46.34 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 25 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 26 C 0.10 1.72 6.34 86.36 0.55 2.26 16 27 C -0.12 -1.57 5.36 30.67 0.16 -1.40 16 28 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 1.21 5.88 -2.39 -0.01 1.20 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 1.28 5.88 -2.38 -0.01 1.26 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.42 3.89 7.76 -92.71 -0.72 3.17 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 40 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.09 1.09 7.16 -2.39 -0.02 1.08 16 42 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.06 1.75 7.00 -2.39 -0.02 1.74 16 45 H 0.10 3.65 7.94 -2.39 -0.02 3.63 16 46 H 0.10 3.62 7.69 -2.39 -0.02 3.60 16 47 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 48 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 49 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 50 H 0.09 1.67 5.93 -2.39 -0.01 1.66 16 51 H 0.09 1.17 8.14 -2.38 -0.02 1.16 16 52 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 53 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -83.86 415.20 2.90 -80.96 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.16 Total: 13.29 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 6.34 Total: 2.24 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -5.27 Total: -91.27 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -0.36 Total: -51.56 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -83.86 2.90 -80.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497196055.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.999 kcal (2) G-P(sol) polarization free energy of solvation -83.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds