Wall clock time and date at job start Sat Apr 11 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47060 * 2 1 4 4 C 1.52998 * 109.46970 * 240.00319 * 2 1 3 5 5 O 1.45203 * 109.47301 * 120.00314 * 2 1 3 6 6 C 1.34635 * 117.00009 * 59.99940 * 5 2 1 7 7 O 1.21517 * 119.99999 * 359.97438 * 6 5 2 8 8 N 1.34770 * 119.99919 * 180.02562 * 6 5 2 9 9 C 1.46509 * 120.00092 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.46564 * 35.00007 * 9 8 6 11 11 C 1.50698 * 109.47002 * 154.99579 * 9 8 6 12 12 O 1.21283 * 120.00472 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99538 * 179.97438 * 11 9 8 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 9 15 15 C 1.53004 * 109.47198 * 180.27868 * 14 13 11 16 16 C 1.52997 * 109.47000 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46940 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00043 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00213 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00116 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00201 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47135 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47080 * 119.99899 * 21 19 17 24 24 H 1.48502 * 109.47342 * 239.99982 * 21 19 17 25 25 C 1.52995 * 109.47156 * 274.99977 * 9 8 6 26 26 C 1.53775 * 113.61466 * 159.13343 * 25 9 8 27 27 C 1.53953 * 87.02037 * 220.04835 * 26 25 9 28 28 C 1.53778 * 87.11187 * 25.36394 * 27 26 25 29 29 H 1.09000 * 109.46700 * 299.99610 * 1 2 3 30 30 H 1.08993 * 109.47081 * 59.99524 * 1 2 3 31 31 H 1.09001 * 109.46725 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46874 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47097 * 300.00365 * 3 2 1 34 34 H 1.08998 * 109.46690 * 60.00218 * 3 2 1 35 35 H 1.09001 * 109.47117 * 300.00162 * 4 2 1 36 36 H 1.08996 * 109.47174 * 59.99643 * 4 2 1 37 37 H 1.08997 * 109.47416 * 180.02562 * 4 2 1 38 38 H 0.96996 * 120.00354 * 359.97438 * 8 6 5 39 39 H 0.97001 * 120.00485 * 0.02562 * 13 11 9 40 40 H 1.09009 * 109.47454 * 300.27637 * 14 13 11 41 41 H 1.08998 * 109.47492 * 60.27932 * 14 13 11 42 42 H 1.08995 * 109.46638 * 300.00121 * 15 14 13 43 43 H 1.09006 * 109.47139 * 60.00254 * 15 14 13 44 44 H 1.08995 * 109.47672 * 299.99669 * 16 15 14 45 45 H 1.09007 * 109.47288 * 60.00489 * 16 15 14 46 46 H 0.97000 * 120.00572 * 179.97438 * 20 19 17 47 47 H 1.08995 * 112.84863 * 290.33244 * 25 9 8 48 48 H 1.09004 * 113.61869 * 334.56793 * 26 25 9 49 49 H 1.09000 * 113.61456 * 105.46868 * 26 25 9 50 50 H 1.09005 * 113.53408 * 270.80947 * 27 26 25 51 51 H 1.09000 * 113.74326 * 139.94446 * 27 26 25 52 52 H 1.08994 * 113.61185 * 220.08937 * 28 27 26 53 53 H 1.08996 * 113.61199 * 89.18693 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6846 1.1855 6 6 1.6524 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0674 -2.6655 2.4170 9 6 1.6733 -4.0667 2.5835 10 1 1.6268 -4.5494 1.6073 11 6 2.6863 -4.7743 3.4461 12 8 3.6431 -4.1679 3.8795 13 7 2.5286 -6.0809 3.7367 14 6 3.5166 -6.7703 4.5702 15 6 3.1076 -8.2349 4.7400 16 6 4.1398 -8.9550 5.6100 17 6 3.7367 -10.3974 5.7778 18 1 2.8348 -10.7639 5.3102 19 6 4.5193 -11.2491 6.5281 20 7 5.6173 -10.8028 7.0979 21 14 4.0200 -13.0372 6.7354 22 1 2.7542 -13.2862 5.9997 23 1 5.0879 -13.9153 6.1935 24 1 3.8211 -13.3317 8.1773 25 6 0.2986 -4.1339 3.2517 26 6 -0.4319 -5.4679 3.0250 27 6 -1.7196 -4.6415 2.8547 28 6 -0.8188 -3.4698 2.4301 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6767 -1.7488 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2491 38 1 2.6270 -2.2367 3.0832 39 1 1.7633 -6.5659 3.3903 40 1 4.4947 -6.7193 4.0918 41 1 3.5650 -6.2910 5.5480 42 1 2.1296 -8.2858 5.2184 43 1 3.0593 -8.7143 3.7622 44 1 5.1176 -8.9040 5.1312 45 1 4.1886 -8.4757 6.5879 46 1 6.1677 -11.4019 7.6261 47 1 0.3194 -3.8192 4.2951 48 1 -0.1227 -5.9865 2.1175 49 1 -0.4404 -6.1156 3.9017 50 1 -2.2516 -4.4668 3.7899 51 1 -2.3707 -5.0025 2.0585 52 1 -1.1393 -2.5066 2.8272 53 1 -0.6155 -3.4410 1.3596 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497252502.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:32 Heat of formation + Delta-G solvation = -140.751051 kcal Electronic energy + Delta-G solvation = -30567.512255 eV Core-core repulsion = 26438.446573 eV Total energy + Delta-G solvation = -4129.065682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.17435 -41.11523 -39.45214 -38.08901 -37.05113 -35.67261 -35.20694 -34.73240 -33.12023 -30.31381 -28.31755 -28.29077 -28.25211 -26.48286 -25.37445 -24.70290 -23.14825 -22.32125 -21.37191 -21.07607 -20.46841 -19.44173 -18.57080 -17.91020 -17.77788 -17.37907 -17.07674 -16.74233 -16.55675 -16.38018 -15.98118 -15.69764 -15.41995 -15.25638 -14.90446 -14.51603 -14.33346 -14.21811 -13.75124 -13.56208 -13.43290 -13.35694 -13.22471 -12.98981 -12.90299 -12.83107 -12.79163 -12.76827 -12.54192 -12.42862 -12.35377 -12.26260 -11.99770 -11.67190 -11.61344 -11.44338 -11.32336 -11.28144 -11.19092 -10.99878 -10.82765 -10.55245 -10.22347 -10.09540 -8.18865 -6.29833 1.00402 1.40666 1.42221 1.42738 1.55575 1.72956 2.12656 2.42955 3.03789 3.15259 3.42102 3.65828 3.72990 3.78516 3.84271 3.94159 3.98422 4.00694 4.03246 4.16984 4.22084 4.38285 4.55972 4.57963 4.66608 4.72515 4.80945 4.82441 4.87133 4.87780 4.91814 4.92735 4.95234 4.97426 5.08368 5.10593 5.15026 5.18136 5.19655 5.30472 5.33393 5.36419 5.38962 5.52965 5.53678 5.68275 5.72269 5.85614 6.23109 6.33450 6.41975 6.88140 7.06458 7.30789 7.39797 8.93296 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021161 B = 0.001977 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.842371 B =14156.217243 C =14979.430336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.125 3.875 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.372 6.372 6 C 0.656 3.344 7 O -0.573 6.573 8 N -0.694 5.694 9 C 0.167 3.833 10 H 0.123 0.877 11 C 0.509 3.491 12 O -0.575 6.575 13 N -0.703 5.703 14 C 0.129 3.871 15 C -0.103 4.103 16 C 0.023 3.977 17 C -0.538 4.538 18 H 0.067 0.933 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.966 3.034 22 H -0.258 1.258 23 H -0.281 1.281 24 H -0.281 1.281 25 C -0.122 4.122 26 C -0.137 4.137 27 C -0.132 4.132 28 C -0.132 4.132 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.413 0.587 39 H 0.416 0.584 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.068 0.932 44 H -0.008 1.008 45 H -0.007 1.007 46 H 0.262 0.738 47 H 0.093 0.907 48 H 0.097 0.903 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.077 0.923 52 H 0.054 0.946 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.691 22.758 -16.042 31.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.089 3.911 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.287 6.287 6 C 0.410 3.590 7 O -0.463 6.463 8 N -0.353 5.353 9 C 0.059 3.941 10 H 0.140 0.860 11 C 0.294 3.706 12 O -0.455 6.455 13 N -0.355 5.355 14 C 0.005 3.995 15 C -0.141 4.141 16 C -0.015 4.015 17 C -0.576 4.576 18 H 0.086 0.914 19 C -0.202 4.202 20 N -0.575 5.575 21 Si 0.790 3.210 22 H -0.181 1.181 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.142 4.142 26 C -0.175 4.175 27 C -0.170 4.170 28 C -0.169 4.169 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.122 0.878 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.250 0.750 39 H 0.253 0.747 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.010 0.990 45 H 0.012 0.988 46 H 0.071 0.929 47 H 0.111 0.889 48 H 0.116 0.884 49 H 0.100 0.900 50 H 0.102 0.898 51 H 0.095 0.905 52 H 0.073 0.927 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.215 22.943 -16.095 31.889 hybrid contribution 0.480 -0.946 0.743 1.295 sum -14.735 21.997 -15.352 30.605 Atomic orbital electron populations 1.22462 0.93397 1.04150 1.03443 1.22436 0.94961 0.92439 0.81300 1.21898 1.02242 0.91038 1.04307 1.22479 1.01340 1.02530 0.97363 1.86334 1.71661 1.23052 1.47620 1.17916 0.78565 0.80866 0.81651 1.90822 1.41372 1.70523 1.43622 1.44331 1.55421 1.11356 1.24214 1.20802 0.92490 0.80572 1.00209 0.85964 1.20865 0.86190 0.82640 0.80861 1.90705 1.33330 1.66685 1.54766 1.45913 1.28051 1.09623 1.51932 1.21310 0.91384 0.92752 0.94051 1.21610 0.99964 0.91801 1.00696 1.18951 0.93959 0.94554 0.94026 1.21718 1.08929 0.95929 1.31043 0.91447 1.26013 0.94962 1.03797 0.95417 1.70112 1.15545 1.37357 1.34522 0.85387 0.78645 0.79028 0.77898 1.18127 1.20740 1.20663 1.23016 0.90682 1.00375 1.00161 1.23087 0.96145 0.94942 1.03348 1.22769 0.96085 0.96083 1.02053 1.23094 0.94942 0.97473 1.01401 0.92156 0.89200 0.91134 0.91657 0.87833 0.91308 0.91418 0.89032 0.92579 0.74990 0.74657 0.92982 0.92659 0.91064 0.91332 0.98979 0.98837 0.92878 0.88908 0.88437 0.89985 0.89832 0.90463 0.92729 0.88251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 8.37 71.98 0.60 -1.95 16 2 C 0.12 1.98 1.13 -10.79 -0.01 1.97 16 3 C -0.14 -1.47 8.85 71.98 0.64 -0.83 16 4 C -0.18 -2.83 8.37 71.98 0.60 -2.23 16 5 O -0.37 -7.90 9.94 -55.45 -0.55 -8.45 16 6 C 0.66 14.92 7.39 129.79 0.96 15.87 16 7 O -0.57 -13.59 8.69 19.79 0.17 -13.42 16 8 N -0.69 -15.51 4.93 -573.72 -2.83 -18.34 16 9 C 0.17 3.51 2.37 44.24 0.10 3.61 16 10 H 0.12 2.48 7.41 -2.39 -0.02 2.46 16 11 C 0.51 13.70 7.22 87.66 0.63 14.34 16 12 O -0.58 -19.97 15.84 -3.04 -0.05 -20.02 16 13 N -0.70 -17.95 5.43 -463.05 -2.52 -20.47 16 14 C 0.13 4.29 5.67 86.38 0.49 4.78 16 15 C -0.10 -3.77 5.27 30.59 0.16 -3.61 16 16 C 0.02 1.16 4.97 29.85 0.15 1.30 16 17 C -0.54 -29.46 9.11 25.60 0.23 -29.23 16 18 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 19 C 0.00 -0.25 5.46 84.65 0.46 0.22 16 20 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 21 Si 0.97 43.35 29.54 68.60 2.03 45.38 16 22 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 C -0.12 -2.14 3.26 -10.27 -0.03 -2.17 16 26 C -0.14 -1.95 5.93 31.18 0.18 -1.76 16 27 C -0.13 -1.84 8.09 31.18 0.25 -1.59 16 28 C -0.13 -2.25 6.50 31.12 0.20 -2.04 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.07 1.32 5.88 -2.39 -0.01 1.30 16 32 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 1.38 5.88 -2.39 -0.01 1.37 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.41 9.59 7.90 -92.71 -0.73 8.86 16 39 H 0.42 8.18 6.68 -92.71 -0.62 7.56 16 40 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 44 H -0.01 -0.46 8.14 -2.39 -0.02 -0.47 16 45 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 46 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 47 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 48 H 0.10 1.21 7.99 -2.39 -0.02 1.19 16 49 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 50 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 51 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.10 1.99 5.52 -2.39 -0.01 1.98 16 Total: -1.00 -68.83 416.76 1.72 -67.11 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -0.45 Total: 27.82 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 5.63 Total: -3.33 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -5.06 Total: -95.09 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -0.43 Total: -41.89 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -68.83 1.72 -67.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497252502.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.641 kcal (2) G-P(sol) polarization free energy of solvation -68.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds