Wall clock time and date at job start Sat Apr 11 2020 06:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46948 * 2 1 4 4 C 1.52996 * 109.46925 * 240.00156 * 2 1 3 5 5 O 1.45198 * 109.47255 * 120.00114 * 2 1 3 6 6 C 1.34643 * 116.99880 * 59.99943 * 5 2 1 7 7 O 1.21510 * 119.99843 * 359.97438 * 6 5 2 8 8 N 1.34779 * 119.99871 * 180.02562 * 6 5 2 9 9 C 1.46497 * 119.99677 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.46812 * 175.27152 * 9 8 6 11 11 C 1.53004 * 115.55416 * 294.35645 * 10 9 8 12 12 C 1.50700 * 109.46899 * 294.19085 * 11 10 9 13 13 O 1.21282 * 119.99992 * 353.59921 * 12 11 10 14 14 N 1.34779 * 119.99762 * 173.60696 * 12 11 10 15 15 C 1.46510 * 119.99681 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.46795 * 179.72292 * 15 14 12 17 17 C 1.53000 * 109.46837 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47083 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99904 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99997 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99707 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 119.99895 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47062 * 90.00528 * 22 20 18 24 24 H 1.48504 * 109.46799 * 210.00151 * 22 20 18 25 25 H 1.48500 * 109.47214 * 330.00016 * 22 20 18 26 26 C 1.53004 * 117.50192 * 80.02906 * 10 9 8 27 27 C 1.53004 * 117.49916 * 148.68847 * 10 9 8 28 28 H 1.09005 * 109.47159 * 299.99834 * 1 2 3 29 29 H 1.09000 * 109.47297 * 59.99509 * 1 2 3 30 30 H 1.09002 * 109.47162 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47362 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47872 * 300.00024 * 3 2 1 33 33 H 1.09005 * 109.47324 * 60.00582 * 3 2 1 34 34 H 1.09002 * 109.47369 * 299.99863 * 4 2 1 35 35 H 1.09005 * 109.47277 * 60.00148 * 4 2 1 36 36 H 1.09001 * 109.46847 * 180.02562 * 4 2 1 37 37 H 0.96997 * 119.99633 * 359.97438 * 8 6 5 38 38 H 1.09004 * 109.47188 * 55.27281 * 9 8 6 39 39 H 1.08994 * 109.47112 * 295.26807 * 9 8 6 40 40 H 1.08996 * 109.47429 * 174.18381 * 11 10 9 41 41 H 1.09003 * 109.47010 * 54.18183 * 11 10 9 42 42 H 0.96995 * 120.00111 * 359.71615 * 14 12 11 43 43 H 1.08998 * 109.46901 * 299.72149 * 15 14 12 44 44 H 1.08996 * 109.47178 * 59.72258 * 15 14 12 45 45 H 1.09007 * 109.47068 * 299.99645 * 16 15 14 46 46 H 1.08996 * 109.47286 * 60.00032 * 16 15 14 47 47 H 1.08994 * 109.46965 * 299.99385 * 17 16 15 48 48 H 1.08996 * 109.47098 * 59.99989 * 17 16 15 49 49 H 0.97001 * 119.99918 * 179.97438 * 21 20 18 50 50 H 1.08998 * 117.49657 * 215.00280 * 26 10 9 51 51 H 1.08996 * 117.49430 * 0.02562 * 26 10 9 52 52 H 1.08998 * 117.49942 * 359.97438 * 27 10 9 53 53 H 1.09001 * 117.49824 * 144.99823 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3383 7 8 0.9509 -2.5094 0.5039 8 7 2.0672 -2.6655 2.4171 9 6 1.6731 -4.0666 2.5835 10 6 2.3674 -4.6486 3.8164 11 6 3.8910 -4.7567 3.7265 12 6 4.2616 -5.7574 2.6624 13 8 3.3977 -6.4124 2.1188 14 7 5.5531 -5.9245 2.3151 15 6 5.9134 -6.8978 1.2810 16 6 7.4294 -6.8849 1.0747 17 6 7.8058 -7.9018 -0.0047 18 6 9.2991 -7.8896 -0.2075 19 1 9.9178 -7.2229 0.3750 20 6 9.8754 -8.7288 -1.1374 21 7 11.1785 -8.7178 -1.3146 22 14 8.8053 -9.8813 -2.1452 23 1 8.3801 -9.1976 -3.3930 24 1 9.5790 -11.1016 -2.4885 25 1 7.6064 -10.2611 -1.3555 26 6 1.7614 -4.3302 5.1848 27 6 1.6269 -5.7369 4.5964 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7216 -1.2490 37 1 2.6268 -2.2366 3.0832 38 1 1.9659 -4.6339 1.7000 39 1 0.5925 -4.1272 2.7126 40 1 4.2894 -5.0832 4.6870 41 1 4.3098 -3.7832 3.4713 42 1 6.2436 -5.3978 2.7471 43 1 5.5977 -7.8932 1.5932 44 1 5.4174 -6.6356 0.3466 45 1 7.7452 -5.8894 0.7625 46 1 7.9255 -7.1471 2.0092 47 1 7.4902 -8.8971 0.3079 48 1 7.3097 -7.6400 -0.9393 49 1 11.5841 -9.3085 -1.9685 50 1 2.4482 -4.1976 6.0208 51 1 0.8679 -3.7064 5.2065 52 1 0.6450 -6.0379 4.2314 53 1 2.2252 -6.5298 5.0454 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497255946.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:37 Heat of formation + Delta-G solvation = -140.704461 kcal Electronic energy + Delta-G solvation = -29911.407360 eV Core-core repulsion = 25782.343698 eV Total energy + Delta-G solvation = -4129.063662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.85891 -40.98156 -39.16995 -37.99685 -36.88523 -35.58814 -35.12670 -34.60517 -33.35798 -30.83222 -28.72513 -28.37868 -28.29684 -27.93010 -24.65109 -23.56161 -23.06841 -22.24622 -21.71215 -21.15340 -20.13371 -19.13031 -18.93291 -17.92109 -17.58001 -17.34889 -17.03318 -16.81911 -16.43373 -16.05826 -15.95648 -15.83481 -15.40099 -15.28890 -14.85945 -14.78577 -14.56405 -14.39901 -13.99095 -13.83237 -13.73772 -13.34930 -13.12281 -13.07396 -12.92036 -12.86274 -12.74696 -12.69983 -12.50477 -12.36806 -12.31939 -12.28046 -11.91516 -11.78731 -11.61432 -11.40560 -11.36969 -11.34935 -11.23854 -10.97773 -10.78129 -10.59562 -10.21906 -10.01375 -8.31288 -6.34905 1.13288 1.34790 1.36234 1.47981 1.73018 1.75332 2.21690 2.34278 2.85870 3.04363 3.23745 3.59826 3.68377 3.74729 3.79302 3.80846 3.94081 3.94599 4.09214 4.18541 4.24050 4.47519 4.48952 4.57089 4.60318 4.62294 4.67452 4.75694 4.80561 4.83918 4.85542 4.87250 4.87921 4.88189 4.96749 5.02106 5.04991 5.10460 5.11038 5.23332 5.27017 5.31004 5.35566 5.40843 5.52256 5.53620 5.58128 5.63499 6.25599 6.41196 6.64649 6.73199 7.29881 7.34265 7.35071 8.85025 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009646 B = 0.002288 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.018749 B =12235.277680 C =14209.124940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.126 3.874 3 C -0.135 4.135 4 C -0.183 4.183 5 O -0.366 6.366 6 C 0.642 3.358 7 O -0.598 6.598 8 N -0.692 5.692 9 C 0.182 3.818 10 C -0.138 4.138 11 C -0.096 4.096 12 C 0.501 3.499 13 O -0.578 6.578 14 N -0.722 5.722 15 C 0.128 3.872 16 C -0.099 4.099 17 C -0.013 4.013 18 C -0.530 4.530 19 H 0.039 0.961 20 C 0.005 3.995 21 N -0.949 5.949 22 Si 0.945 3.055 23 H -0.269 1.269 24 H -0.283 1.283 25 H -0.249 1.249 26 C -0.137 4.137 27 C -0.158 4.158 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.418 0.582 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.130 0.870 41 H 0.116 0.884 42 H 0.414 0.586 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.020 0.980 48 H 0.015 0.985 49 H 0.266 0.734 50 H 0.124 0.876 51 H 0.105 0.895 52 H 0.090 0.910 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.222 20.787 14.064 34.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.090 3.910 3 C -0.192 4.192 4 C -0.240 4.240 5 O -0.281 6.281 6 C 0.395 3.605 7 O -0.490 6.490 8 N -0.353 5.353 9 C 0.060 3.940 10 C -0.139 4.139 11 C -0.135 4.135 12 C 0.289 3.711 13 O -0.457 6.457 14 N -0.374 5.374 15 C 0.004 3.996 16 C -0.137 4.137 17 C -0.051 4.051 18 C -0.568 4.568 19 H 0.057 0.943 20 C -0.192 4.192 21 N -0.589 5.589 22 Si 0.769 3.231 23 H -0.194 1.194 24 H -0.208 1.208 25 H -0.173 1.173 26 C -0.174 4.174 27 C -0.196 4.196 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.255 0.745 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.148 0.852 41 H 0.134 0.866 42 H 0.251 0.749 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.038 0.962 48 H 0.034 0.966 49 H 0.075 0.925 50 H 0.142 0.858 51 H 0.123 0.877 52 H 0.109 0.891 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -24.041 20.048 13.124 33.943 hybrid contribution 0.712 -0.647 -0.695 1.187 sum -23.329 19.402 12.429 32.790 Atomic orbital electron populations 1.22460 0.93792 1.03546 1.03747 1.22384 0.94704 0.92705 0.81244 1.21879 1.02390 0.90438 1.04479 1.22497 1.01501 1.02107 0.97917 1.86302 1.71609 1.22926 1.47236 1.18350 0.78881 0.80912 0.82376 1.90913 1.42545 1.71095 1.44401 1.44619 1.55313 1.12269 1.23092 1.20659 0.98206 0.77988 0.97195 1.21094 0.93268 1.06674 0.92855 1.21268 0.94193 0.99191 0.98886 1.21401 0.81780 0.83913 0.83984 1.90692 1.49581 1.49260 1.56185 1.46051 1.08681 1.41945 1.40750 1.21210 0.95454 0.92258 0.90687 1.21467 0.92658 0.99965 0.99603 1.19473 0.94407 0.95871 0.95354 1.21455 0.92646 1.21686 1.20982 0.94261 1.25964 0.96142 0.98843 0.98219 1.70053 1.11784 1.40567 1.36544 0.85725 0.79499 0.78465 0.79386 1.19426 1.20842 1.17288 1.23256 1.02972 0.97474 0.93649 1.22976 1.01514 0.92935 1.02194 0.91427 0.89243 0.92251 0.91367 0.88126 0.90671 0.92469 0.89134 0.92323 0.74454 0.93125 0.91720 0.85207 0.86573 0.74917 0.92650 0.93354 0.91894 0.91468 0.96156 0.96616 0.92483 0.85825 0.87670 0.89136 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 8.37 71.98 0.60 -2.39 16 2 C 0.13 2.21 1.13 -10.80 -0.01 2.20 16 3 C -0.13 -1.46 8.85 71.98 0.64 -0.82 16 4 C -0.18 -3.62 8.37 71.98 0.60 -3.01 16 5 O -0.37 -7.62 9.94 -55.52 -0.55 -8.17 16 6 C 0.64 15.49 8.06 129.79 1.05 16.53 16 7 O -0.60 -18.44 11.88 19.81 0.24 -18.20 16 8 N -0.69 -12.60 5.42 -590.85 -3.20 -15.80 16 9 C 0.18 3.75 5.31 86.38 0.46 4.21 16 10 C -0.14 -2.01 1.01 -52.18 -0.05 -2.07 16 11 C -0.10 -1.29 5.52 29.85 0.16 -1.12 16 12 C 0.50 12.20 7.59 87.66 0.67 12.87 16 13 O -0.58 -19.30 14.62 -3.04 -0.04 -19.34 16 14 N -0.72 -17.45 5.56 -463.04 -2.57 -20.02 16 15 C 0.13 4.09 5.68 86.38 0.49 4.58 16 16 C -0.10 -3.58 5.27 30.59 0.16 -3.42 16 17 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 18 C -0.53 -30.22 9.66 25.60 0.25 -29.98 16 19 H 0.04 2.42 7.99 -2.91 -0.02 2.40 16 20 C 0.01 0.31 5.47 84.65 0.46 0.77 16 21 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 22 Si 0.95 44.95 27.47 68.60 1.88 46.83 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 26 C -0.14 -1.17 9.94 30.62 0.30 -0.86 16 27 C -0.16 -2.28 9.80 30.62 0.30 -1.98 16 28 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.37 5.88 -2.39 -0.01 1.36 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.06 1.52 5.88 -2.39 -0.01 1.50 16 35 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.42 5.00 8.28 -92.71 -0.77 4.23 16 38 H 0.05 1.49 6.69 -2.38 -0.02 1.47 16 39 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 40 H 0.13 1.02 8.09 -2.39 -0.02 1.00 16 41 H 0.12 1.08 7.77 -2.39 -0.02 1.06 16 42 H 0.41 7.37 8.47 -92.71 -0.79 6.59 16 43 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 46 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 48 H 0.02 0.72 7.57 -2.39 -0.02 0.70 16 49 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 50 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 53 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -78.79 426.00 1.54 -77.25 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -0.71 Total: 21.56 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 6.20 Total: -4.97 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -5.47 Total: -94.96 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -0.36 Total: -45.72 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.83 kcal Total: -78.79 1.54 -77.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497255946.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.454 kcal (2) G-P(sol) polarization free energy of solvation -78.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds