Wall clock time and date at job start Sat Apr 11 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47419 * 2 1 4 4 C 1.53007 * 109.46796 * 240.00285 * 2 1 3 5 5 O 1.45193 * 109.47303 * 120.00389 * 2 1 3 6 6 C 1.34640 * 117.00127 * 60.00010 * 5 2 1 7 7 O 1.21504 * 120.00046 * 359.97438 * 6 5 2 8 8 N 1.34781 * 119.99915 * 180.02562 * 6 5 2 9 9 C 1.46501 * 119.99640 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47283 * 59.99922 * 9 8 6 11 11 C 1.52997 * 109.47229 * 299.99567 * 9 8 6 12 12 C 1.50702 * 109.46826 * 179.97438 * 9 8 6 13 13 O 1.21283 * 120.00262 * 145.00155 * 12 9 8 14 14 N 1.34777 * 119.99928 * 324.72061 * 12 9 8 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 9 16 16 H 1.09009 * 110.01539 * 325.06844 * 15 14 12 17 17 C 1.53878 * 110.03122 * 86.45725 * 15 14 12 18 18 C 1.54262 * 106.59963 * 119.28491 * 17 15 14 19 19 C 1.54887 * 104.19527 * 23.61408 * 18 17 15 20 20 H 1.08997 * 110.75990 * 80.55472 * 19 18 17 21 21 C 1.50699 * 110.75630 * 203.74124 * 19 18 17 22 22 H 1.08006 * 120.00117 * 118.53869 * 21 19 18 23 23 C 1.37875 * 120.00047 * 298.54706 * 21 19 18 24 24 N 1.31507 * 119.99957 * 359.97438 * 23 21 19 25 25 Si 1.86803 * 120.00143 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47458 * 89.99688 * 25 23 21 27 27 H 1.48496 * 109.47255 * 209.99920 * 25 23 21 28 28 H 1.48508 * 109.46756 * 329.99349 * 25 23 21 29 29 C 1.54265 * 110.03664 * 203.62302 * 15 14 12 30 30 H 1.09005 * 109.46919 * 299.99753 * 1 2 3 31 31 H 1.08996 * 109.46953 * 59.99796 * 1 2 3 32 32 H 1.09003 * 109.47175 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47853 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47254 * 300.00648 * 3 2 1 35 35 H 1.09005 * 109.46874 * 60.00219 * 3 2 1 36 36 H 1.09003 * 109.46930 * 299.99748 * 4 2 1 37 37 H 1.08996 * 109.47435 * 60.00214 * 4 2 1 38 38 H 1.08998 * 109.47028 * 180.02562 * 4 2 1 39 39 H 0.96998 * 119.99714 * 359.97438 * 8 6 5 40 40 H 1.08995 * 109.47098 * 179.97438 * 10 9 8 41 41 H 1.08994 * 109.47074 * 299.99862 * 10 9 8 42 42 H 1.08996 * 109.47245 * 59.99803 * 10 9 8 43 43 H 1.09005 * 109.47301 * 300.00479 * 11 9 8 44 44 H 1.09003 * 109.47146 * 60.00385 * 11 9 8 45 45 H 1.08995 * 109.47275 * 180.02562 * 11 9 8 46 46 H 0.97000 * 120.00317 * 0.28382 * 14 12 9 47 47 H 1.09006 * 110.03088 * 238.57352 * 17 15 14 48 48 H 1.08999 * 110.02822 * 359.97438 * 17 15 14 49 49 H 1.09001 * 110.48389 * 142.28742 * 18 17 15 50 50 H 1.08993 * 110.48842 * 264.79842 * 18 17 15 51 51 H 0.97005 * 120.00427 * 180.02562 * 24 23 21 52 52 H 1.08999 * 110.48645 * 335.78701 * 29 15 14 53 53 H 1.09005 * 110.48236 * 98.42684 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 8 2.0140 -0.6845 1.1854 6 6 1.6523 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0673 -2.6656 2.4170 9 6 1.6732 -4.0667 2.5834 10 6 2.1876 -4.8855 1.3977 11 6 0.1476 -4.1634 2.6465 12 6 2.2645 -4.6065 3.8602 13 8 1.6459 -5.4135 4.5213 14 7 3.4831 -4.1968 4.2644 15 6 4.0605 -4.7261 5.5025 16 1 3.2745 -4.8934 6.2390 17 6 4.8039 -6.0427 5.2166 18 6 6.2773 -5.8115 5.6109 19 6 6.2184 -4.6535 6.6379 20 1 5.9422 -5.0258 7.6244 21 6 7.5350 -3.9225 6.6945 22 1 7.5827 -2.8751 6.4352 23 6 8.6786 -4.5907 7.0773 24 7 8.6205 -5.8658 7.3933 25 14 10.3105 -3.6843 7.1482 26 1 10.4955 -3.1029 8.5020 27 1 11.4165 -4.6328 6.8615 28 1 10.3168 -2.5965 6.1372 29 6 5.1081 -3.7408 6.0606 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9562 0.8901 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1299 -0.7217 -1.2492 39 1 2.6269 -2.2366 3.0831 40 1 1.8947 -5.9280 1.5217 41 1 1.7603 -4.4951 0.4740 42 1 3.2744 -4.8166 1.3527 43 1 -0.2188 -3.5800 3.4913 44 1 -0.2797 -3.7731 1.7228 45 1 -0.1456 -5.2058 2.7708 46 1 3.9779 -3.5514 3.7358 47 1 4.3793 -6.8488 5.8150 48 1 4.7347 -6.2880 4.1568 49 1 6.6944 -6.7077 6.0700 50 1 6.8644 -5.5218 4.7395 51 1 9.4250 -6.3360 7.6630 52 1 5.5060 -3.1143 5.2622 53 1 4.6720 -3.1258 6.8479 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497285324.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:43 Heat of formation + Delta-G solvation = -152.344297 kcal Electronic energy + Delta-G solvation = -31339.609832 eV Core-core repulsion = 27210.041429 eV Total energy + Delta-G solvation = -4129.568403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.21439 -41.19387 -39.15910 -38.41077 -36.41973 -35.36167 -35.09961 -33.75063 -32.31970 -29.98776 -28.94499 -28.35145 -28.24205 -28.22764 -26.11346 -24.93331 -23.41129 -21.62619 -21.07660 -20.97118 -20.51866 -19.55330 -18.53725 -18.40635 -17.30481 -17.17324 -16.95518 -16.62850 -16.35645 -16.13023 -15.60211 -15.42943 -15.30515 -15.13678 -14.51655 -14.45430 -14.23808 -14.04003 -13.67366 -13.48027 -13.30056 -13.28644 -13.12996 -13.02516 -12.97469 -12.82625 -12.79889 -12.75092 -12.60679 -12.56005 -12.42517 -12.25775 -12.19696 -12.10881 -11.66466 -11.37392 -11.30992 -11.17504 -11.05732 -10.79922 -10.69739 -10.45205 -10.41731 -10.11107 -8.08828 -6.18913 0.92987 1.43597 1.45072 1.51803 1.54129 1.75581 1.97764 2.45931 3.03541 3.22442 3.40641 3.78296 3.80872 3.83522 3.87452 3.97690 4.00689 4.02840 4.19662 4.45909 4.62505 4.66741 4.68457 4.69336 4.69789 4.75016 4.78629 4.79842 4.83535 4.90862 4.91987 4.94019 5.00390 5.06336 5.08955 5.17153 5.17832 5.20079 5.22856 5.25853 5.35266 5.40371 5.41399 5.55087 5.62586 5.68157 5.94853 6.01588 6.29179 6.38349 6.42590 6.92078 7.05221 7.30630 7.49067 8.99495 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.002662 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.316334 B =10515.755353 C =12086.982511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.126 3.874 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.657 3.343 7 O -0.571 6.571 8 N -0.702 5.702 9 C 0.188 3.812 10 C -0.158 4.158 11 C -0.146 4.146 12 C 0.519 3.481 13 O -0.559 6.559 14 N -0.703 5.703 15 C 0.150 3.850 16 H 0.077 0.923 17 C -0.125 4.125 18 C -0.090 4.090 19 C 0.040 3.960 20 H 0.000 1.000 21 C -0.527 4.527 22 H 0.060 0.940 23 C 0.011 3.989 24 N -0.920 5.920 25 Si 0.951 3.049 26 H -0.279 1.279 27 H -0.289 1.289 28 H -0.264 1.264 29 C -0.107 4.107 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.413 0.587 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.410 0.590 47 H 0.052 0.948 48 H 0.063 0.937 49 H 0.037 0.963 50 H 0.037 0.963 51 H 0.258 0.742 52 H 0.075 0.925 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.562 12.293 -17.406 26.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.090 3.910 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.411 3.589 7 O -0.461 6.461 8 N -0.365 5.365 9 C 0.100 3.900 10 C -0.217 4.217 11 C -0.205 4.205 12 C 0.304 3.696 13 O -0.436 6.436 14 N -0.354 5.354 15 C 0.046 3.954 16 H 0.095 0.905 17 C -0.163 4.163 18 C -0.129 4.129 19 C 0.021 3.979 20 H 0.018 0.982 21 C -0.565 4.565 22 H 0.078 0.922 23 C -0.188 4.188 24 N -0.560 5.560 25 Si 0.777 3.223 26 H -0.205 1.205 27 H -0.215 1.215 28 H -0.188 1.188 29 C -0.145 4.145 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.250 0.750 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.247 0.753 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.067 0.933 52 H 0.094 0.906 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.238 11.381 -17.324 26.331 hybrid contribution 1.622 0.304 0.573 1.747 sum -14.616 11.686 -16.751 25.115 Atomic orbital electron populations 1.22474 0.93733 1.04001 1.03432 1.22404 0.94689 0.92465 0.81446 1.21900 1.02377 0.91065 1.04211 1.22479 1.01549 1.02516 0.97152 1.86340 1.71550 1.22992 1.47534 1.18014 0.78409 0.80710 0.81765 1.90841 1.41233 1.70402 1.43617 1.44817 1.56051 1.11328 1.24326 1.20425 0.96888 0.79576 0.93080 1.22208 1.01962 1.00052 0.97434 1.22041 0.91376 1.03618 1.03429 1.20623 0.81326 0.81722 0.85926 1.90726 1.61995 1.35149 1.55741 1.46260 1.18035 1.45589 1.25558 1.21577 0.94942 0.93702 0.85220 0.90501 1.22529 0.96324 0.96873 1.00608 1.22078 0.93050 0.99578 0.98163 1.19527 0.92705 0.92443 0.93185 0.98155 1.21490 0.93502 0.96505 1.45032 0.92205 1.25758 1.02398 0.95552 0.95070 1.70095 1.29284 1.09957 1.46639 0.85657 0.79566 0.78529 0.78499 1.20453 1.21465 1.18814 1.22574 0.94756 0.97123 1.00081 0.92221 0.89243 0.91332 0.91434 0.88014 0.91389 0.91283 0.89279 0.92214 0.75013 0.90498 0.88995 0.91400 0.92563 0.89431 0.90575 0.75312 0.92884 0.91842 0.94421 0.94370 0.93259 0.90631 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 8.37 71.98 0.60 -2.03 16 2 C 0.13 1.93 1.13 -10.79 -0.01 1.92 16 3 C -0.14 -1.46 8.85 71.98 0.64 -0.82 16 4 C -0.18 -2.67 8.37 71.98 0.60 -2.07 16 5 O -0.37 -7.23 9.94 -55.50 -0.55 -7.79 16 6 C 0.66 13.86 7.48 129.79 0.97 14.83 16 7 O -0.57 -13.26 8.09 19.83 0.16 -13.10 16 8 N -0.70 -13.62 4.86 -553.75 -2.69 -16.32 16 9 C 0.19 4.14 0.98 2.86 0.00 4.14 16 10 C -0.16 -3.27 8.38 71.98 0.60 -2.66 16 11 C -0.15 -3.26 7.93 71.98 0.57 -2.69 16 12 C 0.52 14.06 6.63 87.66 0.58 14.64 16 13 O -0.56 -19.24 15.77 -3.04 -0.05 -19.29 16 14 N -0.70 -18.26 4.69 -439.09 -2.06 -20.32 16 15 C 0.15 4.94 3.23 45.72 0.15 5.09 16 16 H 0.08 2.69 7.61 -2.38 -0.02 2.67 16 17 C -0.12 -4.61 6.59 31.32 0.21 -4.41 16 18 C -0.09 -4.09 5.56 31.67 0.18 -3.92 16 19 C 0.04 1.91 2.82 -10.25 -0.03 1.88 16 20 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 21 C -0.53 -27.56 8.54 25.60 0.22 -27.34 16 22 H 0.06 3.00 7.78 -2.91 -0.02 2.98 16 23 C 0.01 0.59 5.33 84.66 0.45 1.04 16 24 N -0.92 -52.73 12.02 21.45 0.26 -52.48 16 25 Si 0.95 42.42 29.54 68.60 2.03 44.45 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 28 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 29 C -0.11 -3.86 5.94 31.67 0.19 -3.68 16 30 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.32 5.88 -2.39 -0.01 1.30 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.07 1.33 5.88 -2.39 -0.01 1.32 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.41 6.98 7.36 -92.71 -0.68 6.29 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.09 1.95 6.17 -2.39 -0.01 1.94 16 42 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.09 1.95 6.16 -2.39 -0.01 1.94 16 45 H 0.08 1.74 7.87 -2.39 -0.02 1.72 16 46 H 0.41 8.70 7.09 -92.71 -0.66 8.04 16 47 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 48 H 0.06 2.17 7.92 -2.39 -0.02 2.15 16 49 H 0.04 1.92 7.37 -2.39 -0.02 1.90 16 50 H 0.04 1.76 8.04 -2.39 -0.02 1.74 16 51 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 52 H 0.08 2.51 7.63 -2.39 -0.02 2.49 16 53 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -63.85 409.29 2.58 -61.27 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: -0.43 Total: 29.63 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 5.92 Total: -6.07 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -4.49 Total: -89.12 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -0.44 Total: -40.17 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -63.85 2.58 -61.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497285324.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.070 kcal (2) G-P(sol) polarization free energy of solvation -63.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds