Wall clock time and date at job start Sat Apr 11 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46748 * 2 1 4 4 C 1.53002 * 109.46901 * 240.00397 * 2 1 3 5 5 O 1.45196 * 109.47193 * 120.00282 * 2 1 3 6 6 C 1.34229 * 117.00292 * 60.00053 * 5 2 1 7 7 O 1.20835 * 119.99921 * 359.97438 * 6 5 2 8 8 C 1.50692 * 120.00355 * 179.97438 * 6 5 2 9 9 C 1.53003 * 109.47518 * 180.02562 * 8 6 5 10 10 N 1.46501 * 109.47544 * 180.02562 * 9 8 6 11 11 C 1.34767 * 119.99933 * 180.02562 * 10 9 8 12 12 O 1.21586 * 120.00368 * 355.01189 * 11 10 9 13 13 N 1.34781 * 119.99998 * 175.01697 * 11 10 9 14 14 C 1.46932 * 120.62666 * 4.93532 * 13 11 10 15 15 C 1.53628 * 108.53789 * 126.37263 * 14 13 11 16 16 C 1.53037 * 109.24098 * 54.85809 * 15 14 13 17 17 C 1.53003 * 109.45956 * 178.48869 * 16 15 14 18 18 C 1.50704 * 109.47016 * 295.07064 * 17 16 15 19 19 H 1.08004 * 120.00088 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00086 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99864 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00176 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47267 * 89.99597 * 22 20 18 24 24 H 1.48498 * 109.47296 * 210.00124 * 22 20 18 25 25 H 1.48502 * 109.46923 * 329.99902 * 22 20 18 26 26 C 1.53040 * 109.53731 * 298.50641 * 16 15 14 27 27 C 1.46925 * 120.63187 * 185.22227 * 13 11 10 28 28 H 1.08998 * 109.47019 * 299.99317 * 1 2 3 29 29 H 1.08994 * 109.47530 * 59.99786 * 1 2 3 30 30 H 1.09003 * 109.47139 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46900 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47280 * 300.00368 * 3 2 1 33 33 H 1.09002 * 109.47290 * 60.00578 * 3 2 1 34 34 H 1.09003 * 109.46997 * 299.99809 * 4 2 1 35 35 H 1.09002 * 109.47019 * 59.99347 * 4 2 1 36 36 H 1.08992 * 109.47208 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.47179 * 59.99851 * 8 6 5 38 38 H 1.09004 * 109.47346 * 300.00028 * 8 6 5 39 39 H 1.09004 * 109.46820 * 300.00333 * 9 8 6 40 40 H 1.08999 * 109.47031 * 59.99743 * 9 8 6 41 41 H 0.96998 * 119.99624 * 359.97438 * 10 9 8 42 42 H 1.08997 * 109.58552 * 246.20454 * 14 13 11 43 43 H 1.09000 * 109.58974 * 6.63269 * 14 13 11 44 44 H 1.08996 * 109.63697 * 294.86278 * 15 14 13 45 45 H 1.09008 * 109.45415 * 174.73865 * 15 14 13 46 46 H 1.08995 * 109.45115 * 58.52425 * 16 15 14 47 47 H 1.08995 * 109.47269 * 55.06397 * 17 16 15 48 48 H 1.08995 * 109.47323 * 175.07019 * 17 16 15 49 49 H 0.97005 * 119.99847 * 180.02562 * 21 20 18 50 50 H 1.08996 * 109.49815 * 301.41419 * 26 16 15 51 51 H 1.09005 * 109.51942 * 181.33575 * 26 16 15 52 52 H 1.08995 * 109.58589 * 353.36665 * 27 13 11 53 53 H 1.08998 * 109.58412 * 113.65312 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6534 -1.9685 1.3378 7 8 0.9559 -2.5026 0.5081 8 6 2.1183 -2.7438 2.5434 9 6 1.5718 -4.1712 2.4738 10 7 2.0233 -4.9248 3.6462 11 6 1.6619 -6.2142 3.7985 12 8 0.8885 -6.7258 3.0122 13 7 2.1578 -6.9365 4.8227 14 6 3.0072 -6.3051 5.8419 15 6 2.4115 -6.6022 7.2265 16 6 2.2506 -8.1150 7.3922 17 6 1.6928 -8.4188 8.7841 18 6 2.6974 -8.0062 9.8290 19 1 3.6397 -7.5712 9.5301 20 6 2.4141 -8.1850 11.1664 21 7 1.2669 -8.7151 11.5303 22 14 3.6596 -7.6742 12.4615 23 1 3.4156 -6.2628 12.8535 24 1 3.5222 -8.5498 13.6529 25 1 5.0312 -7.8039 11.9074 26 6 1.2864 -8.6466 6.3293 27 6 1.8646 -8.3716 4.9377 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6765 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6765 -0.2073 -2.1393 36 1 3.1299 -0.7216 -1.2491 37 1 1.7549 -2.2590 3.4495 38 1 3.2079 -2.7728 2.5588 39 1 0.4822 -4.1426 2.4581 40 1 1.9355 -4.6557 1.5677 41 1 2.5829 -4.4959 4.3123 42 1 4.0163 -6.7124 5.7801 43 1 3.0351 -5.2278 5.6780 44 1 1.4379 -6.1206 7.3174 45 1 3.0797 -6.2206 7.9986 46 1 3.2208 -8.5980 7.2765 47 1 0.7658 -7.8651 8.9329 48 1 1.4958 -9.4872 8.8714 49 1 1.0674 -8.8405 12.4713 50 1 0.3234 -8.1459 6.4287 51 1 1.1536 -9.7203 6.4624 52 1 1.1384 -8.6582 4.1771 53 1 2.7820 -8.9441 4.8011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579348282.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:53 Heat of formation + Delta-G solvation = -154.118953 kcal Electronic energy + Delta-G solvation = -29808.321426 eV Core-core repulsion = 25678.676068 eV Total energy + Delta-G solvation = -4129.645358 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.94090 -41.40904 -38.94943 -38.23245 -36.32406 -35.67441 -35.08379 -34.00824 -32.40715 -31.43930 -29.68926 -28.38433 -28.29188 -26.63257 -25.50356 -24.16443 -23.43129 -22.52062 -21.51491 -20.77990 -20.35280 -19.06120 -18.37995 -18.29364 -17.53885 -17.43224 -17.07425 -16.67322 -16.50497 -15.69762 -15.56503 -15.36234 -15.15096 -15.03032 -14.91271 -14.64864 -14.56169 -14.40581 -14.20973 -13.85389 -13.38801 -13.33709 -13.15618 -13.01421 -12.95582 -12.90167 -12.86724 -12.70892 -12.68294 -12.47767 -12.35052 -12.28846 -12.18216 -12.11991 -11.72667 -11.42576 -11.40075 -11.24993 -11.03505 -10.94490 -10.81030 -10.49679 -10.27968 -9.43901 -8.13498 -6.23187 1.17819 1.34971 1.43953 1.44925 1.55453 1.91102 2.10548 2.45223 2.93481 3.20380 3.50666 3.72199 3.78655 3.81342 3.95421 3.97385 4.01385 4.04570 4.11310 4.24034 4.42207 4.44539 4.56095 4.59032 4.59710 4.69835 4.76054 4.77646 4.81241 4.82383 4.87064 4.88377 4.91802 4.93803 4.99612 5.13104 5.13632 5.25434 5.29521 5.33550 5.35625 5.40512 5.42605 5.55531 5.58135 5.62412 5.84792 5.92608 5.99001 6.31679 6.78019 6.93910 6.94591 7.45677 7.52712 8.98443 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017807 B = 0.001805 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.994610 B =15505.248555 C =16563.859767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.107 3.893 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.352 6.352 6 C 0.468 3.532 7 O -0.528 6.528 8 C -0.117 4.117 9 C 0.155 3.845 10 N -0.732 5.732 11 C 0.703 3.297 12 O -0.638 6.638 13 N -0.624 5.624 14 C 0.117 3.883 15 C -0.114 4.114 16 C -0.073 4.073 17 C 0.031 3.969 18 C -0.524 4.524 19 H 0.070 0.930 20 C -0.006 4.006 21 N -0.939 5.939 22 Si 0.962 3.038 23 H -0.274 1.274 24 H -0.291 1.291 25 H -0.259 1.259 26 C -0.122 4.122 27 C 0.136 3.864 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.413 0.587 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.043 0.957 45 H 0.079 0.921 46 H 0.066 0.934 47 H -0.018 1.018 48 H -0.015 1.015 49 H 0.260 0.740 50 H 0.041 0.959 51 H 0.070 0.930 52 H 0.077 0.923 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.657 20.808 -22.991 31.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.071 3.929 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.269 6.269 6 C 0.312 3.688 7 O -0.418 6.418 8 C -0.154 4.154 9 C 0.031 3.969 10 N -0.392 5.392 11 C 0.405 3.595 12 O -0.519 6.519 13 N -0.360 5.360 14 C -0.005 4.005 15 C -0.152 4.152 16 C -0.091 4.091 17 C -0.007 4.007 18 C -0.562 4.562 19 H 0.089 0.911 20 C -0.203 4.203 21 N -0.580 5.580 22 Si 0.787 3.213 23 H -0.199 1.199 24 H -0.217 1.217 25 H -0.183 1.183 26 C -0.161 4.161 27 C 0.013 3.987 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.253 0.747 42 H 0.107 0.893 43 H 0.121 0.879 44 H 0.061 0.939 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.001 0.999 48 H 0.003 0.997 49 H 0.068 0.932 50 H 0.060 0.940 51 H 0.089 0.911 52 H 0.095 0.905 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.824 20.287 -23.704 31.739 hybrid contribution -0.093 -0.178 1.309 1.324 sum 5.731 20.109 -22.396 30.639 Atomic orbital electron populations 1.22474 0.94208 1.03474 1.03768 1.22473 0.94437 0.93460 0.82521 1.21871 1.02515 0.90844 1.04126 1.22465 1.01954 1.01966 0.97416 1.86536 1.69686 1.24854 1.45854 1.23625 0.76876 0.80933 0.87354 1.90647 1.36255 1.70450 1.44404 1.21487 1.05779 0.92335 0.95830 1.20722 0.99070 0.89755 0.87381 1.44956 1.57118 1.09981 1.27153 1.15959 0.80294 0.81840 0.81457 1.90879 1.40671 1.72183 1.48210 1.47381 1.53103 1.09942 1.25574 1.21965 0.94035 0.98592 0.85906 1.21870 1.00862 0.95882 0.96598 1.21029 0.98164 0.96049 0.93877 1.19041 0.94901 0.94251 0.92458 1.21680 1.03204 1.39824 0.91494 0.91145 1.26002 0.97262 0.95538 1.01501 1.70127 1.24854 1.46150 1.16835 0.85490 0.79668 0.78010 0.78130 1.19916 1.21663 1.18253 1.21924 0.98531 1.01102 0.94514 1.21437 1.01115 0.79478 0.96644 0.91668 0.89413 0.92208 0.90996 0.88605 0.91183 0.92172 0.89444 0.91446 0.84478 0.83919 0.92960 0.92245 0.74689 0.89305 0.87861 0.93859 0.90254 0.91585 0.99930 0.99712 0.93168 0.93965 0.91112 0.90503 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 8.37 71.98 0.60 -1.92 16 2 C 0.11 1.39 1.13 -10.79 -0.01 1.38 16 3 C -0.14 -1.04 8.85 71.98 0.64 -0.41 16 4 C -0.18 -2.39 8.37 71.98 0.60 -1.78 16 5 O -0.35 -5.34 9.89 -51.40 -0.51 -5.85 16 6 C 0.47 7.87 7.27 71.23 0.52 8.39 16 7 O -0.53 -12.26 11.48 21.94 0.25 -12.01 16 8 C -0.12 -1.27 5.93 29.85 0.18 -1.09 16 9 C 0.16 3.00 4.97 86.38 0.43 3.43 16 10 N -0.73 -14.57 5.46 -478.53 -2.62 -17.18 16 11 C 0.70 20.65 8.30 179.06 1.49 22.13 16 12 O -0.64 -24.52 15.77 -3.99 -0.06 -24.58 16 13 N -0.62 -17.01 2.97 -836.06 -2.48 -19.49 16 14 C 0.12 2.60 6.42 86.51 0.56 3.15 16 15 C -0.11 -3.59 5.21 30.82 0.16 -3.43 16 16 C -0.07 -2.73 2.10 -10.77 -0.02 -2.75 16 17 C 0.03 1.55 4.45 29.85 0.13 1.68 16 18 C -0.52 -28.01 8.39 25.60 0.21 -27.79 16 19 H 0.07 3.48 7.06 -2.91 -0.02 3.46 16 20 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 21 N -0.94 -56.76 13.29 21.45 0.28 -56.48 16 22 Si 0.96 42.78 29.54 68.60 2.03 44.80 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 26 C -0.12 -4.16 5.36 30.67 0.16 -4.00 16 27 C 0.14 3.98 6.44 86.36 0.56 4.54 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 1.16 5.89 -2.39 -0.01 1.14 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 1.12 5.89 -2.39 -0.01 1.11 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.14 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.05 1.28 8.10 -2.38 -0.02 1.26 16 40 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 41 H 0.41 5.29 5.96 -92.71 -0.55 4.74 16 42 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.10 1.54 5.64 -2.39 -0.01 1.52 16 44 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.08 2.59 6.91 -2.38 -0.02 2.58 16 46 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 47 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 48 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 49 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 50 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 52 H 0.08 2.43 6.99 -2.39 -0.02 2.41 16 53 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -76.83 413.97 3.89 -72.94 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.33 Total: 16.20 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 6.66 Total: 1.64 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -4.81 Total: -93.15 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -0.32 Total: -42.44 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -76.83 3.89 -72.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579348282.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.180 kcal (2) G-P(sol) polarization free energy of solvation -76.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds