Wall clock time and date at job start Sat Apr 11 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46853 * 2 1 4 4 H 1.08994 * 109.71137 * 60.73709 * 3 2 1 5 5 C 1.52879 * 109.61986 * 300.42980 * 3 2 1 6 6 O 1.42963 * 109.29751 * 188.11634 * 5 3 2 7 7 C 1.42959 * 114.16343 * 62.45251 * 6 5 3 8 8 H 1.09002 * 109.55689 * 57.36878 * 7 6 5 9 9 C 1.53008 * 109.51217 * 177.49233 * 7 6 5 10 10 C 1.52998 * 109.47085 * 294.74927 * 9 7 6 11 11 C 1.53293 * 109.22570 * 297.41501 * 7 6 5 12 12 N 1.47149 * 108.38208 * 52.30516 * 11 7 6 13 13 C 1.34779 * 120.98348 * 129.43954 * 12 11 7 14 14 O 1.21351 * 119.99974 * 188.07354 * 13 12 11 15 15 C 1.49450 * 119.99899 * 8.08510 * 13 12 11 16 16 O 1.21350 * 119.99982 * 6.42440 * 15 13 12 17 17 N 1.34772 * 120.00179 * 186.43032 * 15 13 12 18 18 C 1.46496 * 120.00220 * 179.97438 * 17 15 13 19 19 C 1.52999 * 109.47411 * 180.02562 * 18 17 15 20 20 C 1.53001 * 109.46946 * 60.00369 * 19 18 17 21 21 C 1.53004 * 109.47180 * 300.00507 * 19 18 17 22 22 C 1.50700 * 109.47410 * 180.02562 * 19 18 17 23 23 H 1.07996 * 119.99705 * 359.97438 * 22 19 18 24 24 C 1.37879 * 119.99920 * 180.02562 * 22 19 18 25 25 N 1.31509 * 120.00288 * 359.97438 * 24 22 19 26 26 Si 1.86801 * 119.99845 * 179.97438 * 24 22 19 27 27 H 1.48501 * 109.47057 * 89.99447 * 26 24 22 28 28 H 1.48498 * 109.47102 * 209.99603 * 26 24 22 29 29 H 1.48495 * 109.47222 * 330.00030 * 26 24 22 30 30 H 1.08996 * 109.47128 * 175.79228 * 1 2 3 31 31 H 1.09000 * 109.46666 * 295.79172 * 1 2 3 32 32 H 1.08998 * 109.46831 * 55.79134 * 1 2 3 33 33 H 1.08997 * 109.47026 * 239.99870 * 2 1 3 34 34 H 1.08998 * 109.47070 * 119.99996 * 2 1 3 35 35 H 1.09001 * 109.57673 * 68.10481 * 5 3 2 36 36 H 1.08998 * 109.36429 * 308.00266 * 5 3 2 37 37 H 1.09001 * 109.46953 * 54.74589 * 9 7 6 38 38 H 1.08994 * 109.47390 * 174.74570 * 9 7 6 39 39 H 1.09001 * 109.46949 * 299.99665 * 10 9 7 40 40 H 1.09003 * 109.47507 * 59.99516 * 10 9 7 41 41 H 1.08990 * 109.47313 * 179.97438 * 10 9 7 42 42 H 1.09001 * 109.68141 * 292.58094 * 11 7 6 43 43 H 1.09002 * 109.68101 * 172.02574 * 11 7 6 44 44 H 0.97000 * 120.00145 * 0.02562 * 17 15 13 45 45 H 1.09005 * 109.47100 * 60.00338 * 18 17 15 46 46 H 1.08994 * 109.47821 * 300.00507 * 18 17 15 47 47 H 1.08994 * 109.47146 * 60.00036 * 20 19 18 48 48 H 1.09000 * 109.46898 * 299.99901 * 20 19 18 49 49 H 1.09003 * 109.47060 * 180.02562 * 20 19 18 50 50 H 1.09003 * 109.47190 * 179.97438 * 21 19 18 51 51 H 1.09000 * 109.46961 * 299.99970 * 21 19 18 52 52 H 1.08997 * 109.46916 * 59.99778 * 21 19 18 53 53 H 0.97000 * 120.00715 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6896 1.9563 0.8951 5 6 1.5234 2.1696 -1.2417 6 8 2.1522 3.4502 -1.3351 7 6 3.5717 3.3948 -1.4952 8 1 3.8163 2.8124 -2.3836 9 6 4.1248 4.8134 -1.6460 10 6 3.6006 5.4298 -2.9446 11 6 4.1934 2.7314 -0.2610 12 7 3.5113 1.4481 -0.0308 13 6 4.2130 0.3104 0.1412 14 8 3.6374 -0.7571 0.1832 15 6 5.7001 0.3635 0.2803 16 8 6.2646 1.4350 0.3557 17 7 6.4143 -0.7787 0.3220 18 6 7.8720 -0.7267 0.4578 19 6 8.4335 -2.1498 0.4788 20 6 8.0680 -2.8614 -0.8254 21 6 7.8380 -2.9157 1.6619 22 6 9.9330 -2.0962 0.6192 23 1 10.4353 -1.1425 0.6863 24 6 10.6636 -3.2647 0.6608 25 7 10.0520 -4.4260 0.5786 26 14 12.5224 -3.1983 0.8341 27 1 12.8861 -3.2115 2.2738 28 1 13.1247 -4.3768 0.1606 29 1 13.0340 -1.9539 0.2058 30 1 -0.3633 -1.0249 -0.0754 31 1 -0.3633 0.4471 0.9253 32 1 -0.3633 0.5778 -0.8499 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.4437 2.2988 -1.1665 36 1 1.7598 1.5823 -2.1289 37 1 3.8030 5.4206 -0.7999 38 1 5.2137 4.7778 -1.6743 39 1 3.9224 4.8226 -3.7907 40 1 2.5116 5.4654 -2.9163 41 1 3.9942 6.4405 -3.0518 42 1 4.0635 3.3772 0.6075 43 1 5.2554 2.5569 -0.4338 44 1 5.9632 -1.6353 0.2613 45 1 8.1324 -0.2193 1.3868 46 1 8.2963 -0.1814 -0.3852 47 1 8.4922 -2.3158 -1.6682 48 1 6.9834 -2.9002 -0.9265 49 1 8.4676 -3.8754 -0.8103 50 1 8.2376 -3.9297 1.6765 51 1 8.0983 -2.4086 2.5910 52 1 6.7534 -2.9544 1.5607 53 1 10.5659 -5.2482 0.6083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593931714.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:09 Heat of formation + Delta-G solvation = -118.316028 kcal Electronic energy + Delta-G solvation = -31631.565048 eV Core-core repulsion = 27503.472222 eV Total energy + Delta-G solvation = -4128.092827 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.34506 -40.57951 -39.45932 -38.29317 -36.55629 -35.65148 -34.88941 -33.96644 -32.77005 -29.98529 -28.96198 -27.79612 -27.60537 -27.20357 -26.08832 -24.97669 -23.39334 -22.53162 -21.99785 -21.03993 -20.56239 -18.88200 -17.93173 -17.89598 -17.77174 -17.31693 -17.01382 -16.65898 -16.21913 -16.04990 -15.93855 -15.69301 -15.19162 -14.96612 -14.78342 -14.65186 -14.38225 -14.26604 -14.19017 -14.02686 -13.91475 -13.34341 -13.23731 -13.12412 -12.85392 -12.77584 -12.69769 -12.56918 -12.51012 -12.29217 -12.13244 -12.01502 -11.89606 -11.72543 -11.61776 -11.54458 -11.48404 -11.27519 -11.20233 -10.74184 -10.42149 -10.20022 -10.01613 -9.62329 -8.02437 -6.19089 0.27662 1.18380 1.43991 1.47173 1.55006 2.04900 2.33312 2.48467 2.68199 3.21701 3.26080 3.54661 3.73736 3.85811 3.93629 3.99027 4.10591 4.32545 4.33632 4.36948 4.46020 4.46473 4.50615 4.58243 4.64254 4.66289 4.71930 4.80089 4.83125 4.92528 4.97338 5.01982 5.04589 5.10634 5.14060 5.15434 5.22266 5.24449 5.25466 5.28943 5.44721 5.48177 5.53713 5.63183 5.66695 5.86352 6.09720 6.10487 6.17011 6.21258 6.39996 6.65100 6.84699 6.92361 7.49221 8.96831 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.002679 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.195564 B =10449.243592 C =11781.855378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C 0.107 3.893 4 H 0.093 0.907 5 C 0.055 3.945 6 O -0.381 6.381 7 C 0.080 3.920 8 H 0.056 0.944 9 C -0.112 4.112 10 C -0.145 4.145 11 C 0.047 3.953 12 N -0.583 5.583 13 C 0.511 3.489 14 O -0.525 6.525 15 C 0.495 3.505 16 O -0.538 6.538 17 N -0.678 5.678 18 C 0.143 3.857 19 C 0.052 3.948 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.527 4.527 23 H 0.052 0.948 24 C 0.027 3.973 25 N -0.902 5.902 26 Si 0.948 3.052 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.272 1.272 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.135 0.865 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.133 0.867 44 H 0.413 0.587 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.024 0.976 48 H 0.029 0.971 49 H 0.063 0.937 50 H 0.063 0.937 51 H 0.023 0.977 52 H 0.029 0.971 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.707 14.775 -4.324 24.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.146 4.146 3 C 0.005 3.995 4 H 0.111 0.889 5 C -0.022 4.022 6 O -0.299 6.299 7 C 0.022 3.978 8 H 0.074 0.926 9 C -0.150 4.150 10 C -0.203 4.203 11 C -0.074 4.074 12 N -0.316 5.316 13 C 0.294 3.706 14 O -0.402 6.402 15 C 0.276 3.724 16 O -0.418 6.418 17 N -0.329 5.329 18 C 0.021 3.979 19 C 0.051 3.949 20 C -0.181 4.181 21 C -0.182 4.182 22 C -0.565 4.565 23 H 0.071 0.929 24 C -0.173 4.173 25 N -0.540 5.540 26 Si 0.774 3.226 27 H -0.206 1.206 28 H -0.211 1.211 29 H -0.196 1.196 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.153 0.847 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.150 0.850 44 H 0.250 0.750 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.043 0.957 48 H 0.047 0.953 49 H 0.082 0.918 50 H 0.082 0.918 51 H 0.042 0.958 52 H 0.048 0.952 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.654 14.919 -4.238 24.260 hybrid contribution 1.271 -1.011 0.273 1.647 sum -17.384 13.908 -3.965 22.613 Atomic orbital electron populations 1.21931 0.93828 1.02667 1.02769 1.21879 0.96303 0.92954 1.03486 1.22309 0.77316 0.99122 1.00775 0.88916 1.23143 0.99466 0.84190 0.95442 1.87949 1.19768 1.28452 1.93763 1.22630 0.81173 0.98372 0.95669 0.92561 1.21515 1.00935 0.92561 1.00014 1.21673 1.01496 1.00913 0.96170 1.23509 1.01348 0.83155 0.99384 1.48112 1.07366 1.07665 1.68502 1.20067 0.87717 0.84561 0.78281 1.90803 1.69978 1.29712 1.49684 1.20445 0.88579 0.84792 0.78575 1.90488 1.72334 1.28402 1.50562 1.46096 1.08853 1.08784 1.69203 1.21561 0.76472 0.99622 1.00270 1.18363 0.94237 0.89085 0.93209 1.21702 0.96924 1.02556 0.96945 1.21716 0.96595 1.02580 0.97341 1.21256 0.91889 0.92624 1.50759 0.92937 1.25491 1.01857 0.95250 0.94696 1.69921 1.36135 0.97502 1.50458 0.85718 0.81385 0.77485 0.77982 1.20577 1.21131 1.19648 0.92155 0.91781 0.91099 0.92295 0.91479 0.84732 0.92879 0.90420 0.89499 0.92994 0.92520 0.91410 0.89967 0.85005 0.74965 0.92700 0.92445 0.95675 0.95250 0.91841 0.91815 0.95823 0.95246 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.67 71.98 0.70 -1.46 16 2 C -0.11 -2.25 3.89 30.60 0.12 -2.13 16 3 C 0.11 2.11 3.20 44.83 0.14 2.25 16 4 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 5 C 0.05 0.90 5.65 71.94 0.41 1.31 16 6 O -0.38 -7.28 9.93 -148.98 -1.48 -8.76 16 7 C 0.08 1.54 2.78 30.70 0.09 1.63 16 8 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 9 C -0.11 -1.76 5.64 30.60 0.17 -1.59 16 10 C -0.15 -2.03 9.81 71.98 0.71 -1.32 16 11 C 0.05 1.08 5.42 86.35 0.47 1.55 16 12 N -0.58 -14.49 3.03 -795.85 -2.41 -16.90 16 13 C 0.51 15.36 7.68 87.27 0.67 16.03 16 14 O -0.52 -16.84 12.04 -3.25 -0.04 -16.88 16 15 C 0.49 16.62 7.74 87.27 0.68 17.30 16 16 O -0.54 -19.03 13.21 -3.25 -0.04 -19.08 16 17 N -0.68 -24.11 4.95 -464.43 -2.30 -26.41 16 18 C 0.14 5.81 4.50 86.38 0.39 6.20 16 19 C 0.05 2.36 0.50 -52.93 -0.03 2.33 16 20 C -0.12 -5.54 8.08 71.98 0.58 -4.95 16 21 C -0.12 -5.63 8.08 71.98 0.58 -5.05 16 22 C -0.53 -27.10 8.01 25.60 0.21 -26.89 16 23 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 24 C 0.03 1.39 5.15 84.66 0.44 1.83 16 25 N -0.90 -48.08 9.35 21.45 0.20 -47.88 16 26 Si 0.95 41.88 29.54 68.60 2.03 43.91 16 27 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 28 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 29 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.74 6.40 -2.39 -0.02 0.73 16 33 H 0.06 1.43 7.12 -2.39 -0.02 1.42 16 34 H 0.07 1.72 6.45 -2.39 -0.02 1.71 16 35 H 0.14 1.49 6.80 -2.39 -0.02 1.47 16 36 H 0.05 0.92 8.13 -2.39 -0.02 0.90 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 0.85 7.83 -2.39 -0.02 0.83 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.13 3.52 4.50 -34.06 -0.15 3.36 16 44 H 0.41 14.41 5.65 -92.71 -0.52 13.89 16 45 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 46 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.03 1.15 6.86 -2.39 -0.02 1.13 16 49 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 50 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 51 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 53 H 0.26 13.39 8.31 -92.71 -0.77 12.61 16 Total: -1.00 -56.91 399.83 2.50 -54.41 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: 0.23 Total: 30.57 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 6.31 Total: 7.02 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -4.51 Total: -91.19 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.56 Total: -44.72 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -56.91 2.50 -54.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593931714.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.907 kcal (2) G-P(sol) polarization free energy of solvation -56.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds